FC873453

Overview
NameFC873453
Unique NameFC873453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15368 contig Ccv1_Contig15368:70..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873453 vs. ExPASy Swiss-Prot
Match: ZIP12_ARATH (Probable zinc transporter 12 OS=Arabidopsis thaliana GN=ZIP12 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.913e-20
Identity = 52/113 (46.02%), Postives = 72/113 (63.72%), Query Frame = 2
Query:  257 DDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCL-PEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQ 592
            + A+A   K +A  SILI+G+ GV +P+ G     LKT+ + F+  KAFAAGVILATGFVH+L   +E+L + CL  E PW  FP  G  AM AS+LT+L++   + Y  R +
Sbjct:   42 EKASALKYKIIAFFSILIAGVFGVCLPIFG-----LKTESNFFMYVKAFAAGVILATGFVHILPDATESLTSSCLGEEPPWGDFPMTGLVAMAASILTMLIESFASGYLNRSR 149          
BLAST of FC873453 vs. ExPASy Swiss-Prot
Match: ZIP7_ARATH (Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.804e-20
Identity = 51/135 (37.78%), Postives = 79/135 (58.52%), Query Frame = 2
Query:  251 CRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQGLTRATEEQGRVRSVDEDSDS 655
            C ++  A  LK +AI SIL++ ++GV++PL  +    L  D  + V  K  A+GVILATGF+H+L    + L + CLPE PW KFPF  F  M+++LL L+++      Y R     R ++ +G V  ++  S+S
Sbjct:   46 CHNNKEAQKLKIIAIPSILVASMIGVSLPLFSRSIPALGPDREMSVIVKTLASGVILATGFMHVLPDSFDDLTSKCLPEDPWQKFPFATFITMISALLVLMIESFAMCAYAR-----RTSKREGEVVPLENGSNS 175          
BLAST of FC873453 vs. ExPASy Swiss-Prot
Match: ZRT2_YEAST (Zinc-regulated transporter 2 OS=Saccharomyces cerevisiae GN=ZRT2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.216e-11
Identity = 54/174 (31.03%), Postives = 79/174 (45.40%), Query Frame = 2
Query:  242 REDCRDDAAAFN-------LKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCL----PEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQGLTRATEEQGRVRSVDEDSDSGIVPVLEIKDRNVKVFGEEEGGGMH 730
            R+D  D   A N       L+ +A+  ILIS  +GV  P++     F++     F   K F +GVI+AT FVH+L   +EAL + CL     E+PW+      F   + SL  L    + T Y+  K  L     + G V S+D D+ S    V+   D +   F  E    +H
Sbjct:    7 RDDSVDTCQASNGYNGHAGLRILAVFIILISSGLGVYFPILSSRYSFIRLPNWCFFIAKFFGSGVIVATAFVHLLQPAAEALGDECLGGTFAEYPWA------FGICLMSLFLLFFTEIITHYFVAKT-LGHDHGDHGEVTSIDVDAPSSGF-VIRNMDSDPVSFNNEAAYSIH 172          
BLAST of FC873453 vs. ExPASy Swiss-Prot
Match: ZIP6_ARATH (Zinc transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ZIP6 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.191e-11
Identity = 39/111 (35.14%), Postives = 58/111 (52.25%), Query Frame = 2
Query:  251 CRDDAAAFNLKFVAIASILISGIVGVAIP-LIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEAL-DNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQY 577
            CRD   A +LK VA+ +I ++ + GV  P L+ K+           +  K FAAGVIL+T  VH+L    E+L D       PW  FPF G   M+ ++  LL+D   +++
Sbjct:   17 CRDGEEASHLKIVAVFAIFLTSVFGVWGPVLLAKYFHGKPLYDKAILVIKCFAAGVILSTSLVHVLPEAFESLADCQVSSRHPWKDFPFAGLVTMIGAITALLVDLTASEH 127          
The following BLAST results are available for this feature:
BLAST of FC873453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ZIP12_ARATH2.913e-2046.02Probable zinc transporter 12 OS=Arabidopsis thalia... [more]
ZIP7_ARATH3.804e-2037.78Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7... [more]
ZRT2_YEAST4.216e-1131.03Zinc-regulated transporter 2 OS=Saccharomyces cere... [more]
ZIP6_ARATH7.191e-1135.14Zinc transporter 6, chloroplastic OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD07FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CD07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873453 ID=FC873453; Name=FC873453; organism=Citrus clementina; type=EST; length=745bp
CGACGGGGCCCGATTCCTTCTCGTGCTTGCTGATTAAACCCCATCACCAT
CTTCCATACTAATTATTAAAAAAAAAAAAAAAGCTTTTCAGAATCTCGTT
TCTCTTGCCATGTCATTCATCGAGGATCTCTGGGGATTGCGTTTTTTCGA
TCATTTTAGATCAAAGACGAAAGCTTTTTCCGGTTCCTTTTTGCATGCGG
TTTCTGATTCGATGATGAAGTCGAGCTGCGAGTCCTCGGACCGCGAAGAC
TGCCGTGACGACGCGGCGGCCTTTAATCTCAAATTCGTCGCCATAGCCTC
CATCCTCATTTCCGGAATCGTCGGCGTCGCCATTCCGTTAATTGGGAAGC
ACCGCCGGTTCTTAAAAACCGACGGCAGTCTGTTCGTCGCTACTAAAGCG
TTTGCGGCCGGTGTCATTTTGGCTACGGGTTTTGTTCACATGTTATCTGG
AGGATCCGAGGCGTTGGATAACCCGTGTTTGCCCGAATTCCCGTGGTCCA
AGTTCCCGTTCCCTGGGTTTTTCGCCATGGTGGCTTCGCTTCTGACGCTG
CTTCTGGACTTCGTGGGGACACAATATTACGAGAGGAAACAGGGCCTGAC
CCGGGCTACCGAGGAGCAGGGTCGGGTCCGGTCAGTGGATGAGGACTCGG
ATTCGGGTATTGTCCCGGTTCTGGAAATTAAGGACCGGAACGTGAAGGTC
TTCGGTGAGGAGGAAGGTGGAGGCATGCACATTGTGGGGATGCAT
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