FC873460

Overview
NameFC873460
Unique NameFC873460
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10158 contig Ccv1_Contig10158:1..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_BACC1 (Chaperone protein dnaJ OS=Bacillus cereus (strain ATCC 10987) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35
Identity = 78/213 (36.62%), Postives = 112/213 (52.58%), Query Frame = 1
Query:   49 LIMQYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT---GEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L  +YHPD++K   A EKFKE+  AYEVLSDD+KR+ YD+FG AG     G + G  +   G    +++S+                              D++Y + L FEE+IFG +  +E+   + CD+C G+GAK     ++CK C G G V   Q TPFG I     C  C G G+II + C  C G+G+V+ ++ + V IP G+ NG
Sbjct:   28 LAKKYHPDVSKEENAIEKFKEVQEAYEVLSDDQKRAQYDQFGHAGANQGFGGFGGGGDFGGGFGFEDIFSSFFG-----------GGGGRRRDPNAPRQGADLQYQVTLDFEEAIFGKELNVEIPVEDPCDTCKGSGAKPGTSKETCKHCSGSGQVSVEQNTPFGRIVNRQACGHCSGTGQIIKEKCTTCHGSGKVRKRKKINVKIPAGIDNG 229          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_BACCR (Chaperone protein dnaJ OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.822e-34
Identity = 77/213 (36.15%), Postives = 111/213 (52.11%), Query Frame = 1
Query:   49 LIMQYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT---GEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L  +YHPD++K   A EKFKE+  AYEVLSDD+KR+ YD+FG AG     G + G  +   G    +++S+                              D++Y + L FEE+IFG +  +E+   + CD+C G+GAK     ++CK C G G V   Q TPFG I     C  C G G+II + C  C G+ +V+ ++ + V IP G+ NG
Sbjct:   28 LAKKYHPDVSKEENAIEKFKEVQEAYEVLSDDQKRAQYDQFGHAGANQGFGGFGGGGDFGGGFGFEDIFSSFFG-----------GGGGRRRDPNAPRQGADLQYQVTLDFEEAIFGKELNVEIPVEDPCDTCKGSGAKPGTSKETCKHCSGSGQVSVEQNTPFGRIVNRQACGHCSGTGQIIKEKCTTCHGSSKVRKRKKINVKIPAGIDNG 229          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_BACCN (Chaperone protein dnaJ OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.822e-34
Identity = 75/210 (35.71%), Postives = 112/210 (53.33%), Query Frame = 1
Query:   49 LIMQYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L  +YHPD++K   A EKFKE+  AYEVLSD++KR+ YD+FG AG +  + G  +   G    +++S+                              D++Y + L FEE+IFG +  +E+   + CD+C G+GAK     ++CK C G G +   Q TPFG I    TC  C G G++I + C  C G G+V+ ++ + V IP G+ NG
Sbjct:   28 LAKKYHPDVSKEENAVEKFKEVQEAYEVLSDEQKRAQYDQFGHAGSSQGFGG-GDFGGGFGFEDIFSSFF------------GGGSRRRDPNAPRQGADLQYQVTLEFEEAIFGKELNVEIPVEDPCDTCHGSGAKPGTTKETCKYCSGTGQISVEQNTPFGRIVNRQTCRHCSGTGQMIKEKCTTCHGTGKVRKRKKINVKIPAGIDNG 224          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_LISMH (Chaperone protein dnaJ OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.108e-34
Identity = 78/214 (36.45%), Postives = 106/214 (49.53%), Query Frame = 1
Query:   49 LIMQYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            L  QYHPDINK  GA+EKFKEIS AYE LSD +KR+ YD++G       + G +    G   F  +               +                D++Y + L F+E+IFG    IE+   E CD+C G+GAK     + C  C G+G +   Q TPFG +    TC  C G GK I + C  C G G V   + +KV +P GV++G  M+
Sbjct:   28 LSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYDQYGHVDPNQGFGGGAGGGFGGGGFSGFEDIFDTFFGGGGRQQDPNAPRQGS--------DLQYTMRLKFKEAIFGKDAEIEIPREENCDTCHGSGAKPGTTPEKCSHCGGKGSINVEQNTPFGRVVNKRTCQYCNGTGKEIKEKCPTCHGKGRVTKTKKIKVKVPAGVNDGQQMR 233          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_LISIN (Chaperone protein dnaJ OS=Listeria innocua GN=dnaJ PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.108e-34
Identity = 78/214 (36.45%), Postives = 106/214 (49.53%), Query Frame = 1
Query:   49 LIMQYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            L  QYHPDINK  GA+EKFKEIS AYE LSD +KR+ YD++G       + G +    G   F  +               +                D++Y + L F+E+IFG    IE+   E CD+C G+GAK     + C  C G+G +   Q TPFG +    TC  C G GK I + C  C G G V   + +KV +P GV++G  M+
Sbjct:   28 LSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYDQYGHVDPNQGFGGGAGGGFGGGGFSGFEDIFDTFFGGGGRQQDPNAPRQGS--------DLQYTMRLKFKEAIFGKDAEIEIPREENCDTCHGSGAKPGTTPEKCSHCGGKGSINVEQNTPFGRVVNKRTCQYCNGTGKEIKEKCPTCHGKGRVTKTKKIKVKVPAGVNDGQQMR 233          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_MACCJ (Chaperone protein dnaJ OS=Macrococcus caseolyticus (strain JCSC5402) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.059e-34
Identity = 80/212 (37.74%), Postives = 111/212 (52.36%), Query Frame = 1
Query:   49 LIMQYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTS-QGVDPFE-LYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L  +YHPDINK   AE+KFKEI+ AYEVLSDD+K++ YD+FG AG+ G+  G       G   FE ++S+                              D++Y ++++FEE++FG ++ I V     CD+C G+GA+    I++C  C GRG V   Q TPFG +    TC  CGG GK   + C  CGG G       + V +P GV  G
Sbjct:   28 LSKKYHPDINKEADAEDKFKEIAEAYEVLSDDQKKAQYDQFGHAGM-GQGAGFGGQDFGGFGGFEDIFSSFFGGGARRDPNAPRQGN-------------DLQYQMNVTFEEAVFGAEKEISVKKEVECDTCDGSGAQPGTNIKTCSTCGGRGNVHVEQNTPFGRVRSERTCPDCGGTGKEFEEKCSDCGGTGRKVKTVKISVKVPAGVDTG 225          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_LISW6 (Chaperone protein dnaJ OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.059e-34
Identity = 77/214 (35.98%), Postives = 106/214 (49.53%), Query Frame = 1
Query:   49 LIMQYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            L  QYHPDINK  GA+EKFKEIS AYEVLSD +KR+ YD++G       + G +        F  +               +                D++Y + L F+E++FG    IE+   E CD+C G+GAK     + C  C G+G +   Q TPFG +    TC  C G GK I + C  C G G V   + +KV +P GV++G  M+
Sbjct:   28 LSKQYHPDINKEAGADEKFKEISEAYEVLSDSQKRAQYDQYGHVDPNQGFGGGAGGGFSGGGFSGFEDIFDTFFGGGGRQQDPNAPRQGS--------DLQYTMRLKFKEAVFGKDAEIEIPREENCDTCHGSGAKPGTTPEKCSHCGGKGSINVEQNTPFGRVVNKRTCQYCNGTGKEIKEKCSTCHGKGRVTKTKKIKVKVPAGVNDGQQMR 233          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_LACLA (Chaperone protein dnaJ OS=Lactococcus lactis subsp. lactis GN=dnaJ PE=3 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 6.923e-34
Identity = 77/223 (34.53%), Postives = 115/223 (51.57%), Query Frame = 1
Query:   58 QYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEY-----------DGLSNTSQGVDPFE-LYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            +YHPD+NK  GAEEK+KE+  AYE LSD++KR+ YD++GEAG  G +            G    S G   FE ++S+                              D++Y ++L FEE+IFG ++ ++ +  E C +CGG+GAK+    ++C  C GRG +   + TP G +    TC  C G GK I + C  C G+G  +   ++KV +P GV  G  M+
Sbjct:   31 KYHPDLNKEEGAEEKYKEVQEAYETLSDEQKRAAYDQYGEAGANGGFGGGGFGGASGFSGFGGGSGGFGGFEDIFSSFFGGGGAQVNPNAPRQGD------------DLQYRINLKFEEAIFGVEKQVKYNREELCHTCGGSGAKAGTHPETCHKCGGRGQINVVRDTPLGRMQTQVTCDVCNGTGKEIKEKCETCHGSGHEKVAHTVKVTVPAGVETGQKMR 241          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOAB (Chaperone protein dnaJ OS=Clostridium acetobutylicum GN=dnaJ PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 6.923e-34
Identity = 80/215 (37.21%), Postives = 113/215 (52.56%), Query Frame = 1
Query:   49 LIMQYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPF----ELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 678
            L ++YHPD N+ +  AEEKFKEI+ AY+VLSD +K++ YDRFG A   G   G  + S G   F    +++++                              D+ Y + L+FEE++FG ++ I ++  E C++CGGTGAK     ++C  C G G +   + TP G     S+C KCGG G II D C  C G G V+ KR + V IP GV  G
Sbjct:   28 LAIKYHPDKNRGNKEAEEKFKEINEAYQVLSDPDKKANYDRFGTADFNGG-GGFGDFSGGFGDFGDLGDIFNSFFGGGFSGGSSRARKDAPQRGN--------DMEYSISLTFEEAVFGVEKSINITRSENCETCGGTGAKKGTSPKTCDKCGGTGTIRVQRNTPLGSFVTQSSCDKCGGRGTIISDPCHECHGAGHVRKKRKISVKIPAGVDTG 233          
BLAST of FC873460 vs. ExPASy Swiss-Prot
Match: DNAJ_LACSS (Chaperone protein dnaJ OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.042e-34
Identity = 75/214 (35.05%), Postives = 107/214 (50.00%), Query Frame = 1
Query:   49 LIMQYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAXXXXXXXXXXXXXEAXXXXXXXXXXXXXXLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 690
            L  +YHPDINK+P AE KFKE++ AYE LSD +KR+ YD++G AG+ G + G +   QG   F                                   D++Y + L FEE++FG +  I  S    C +C G+GAK     ++C  C G G +   ++TP G +    TC  CGG GK I   C  C G G  + + ++KV +P GV +G  M+
Sbjct:   29 LSKKYHPDINKAPDAEAKFKEVTEAYEALSDPQKRAAYDQYGHAGMNGGFGGGAGAGQGFGGFG--GGAEGFGGFDDIFSSFFGGGARQQPNGPRQGSDLQYRMDLKFEEAVFGKETKISYSREAECHTCHGSGAKPGTSAETCHKCHGAGQIQVERQTPLGRMMSRETCDVCGGTGKEIKSKCDTCHGTGREEERHTVKVKVPAGVEDGQQMR 240          
The following BLAST results are available for this feature:
BLAST of FC873460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_BACC13.671e-3536.62Chaperone protein dnaJ OS=Bacillus cereus (strain ... [more]
DNAJ_BACCR1.822e-3436.15Chaperone protein dnaJ OS=Bacillus cereus (strain ... [more]
DNAJ_BACCN1.822e-3435.71Chaperone protein dnaJ OS=Bacillus cereus subsp. c... [more]
DNAJ_LISMH3.108e-3436.45Chaperone protein dnaJ OS=Listeria monocytogenes s... [more]
DNAJ_LISIN3.108e-3436.45Chaperone protein dnaJ OS=Listeria innocua GN=dnaJ... [more]
DNAJ_MACCJ4.059e-3437.74Chaperone protein dnaJ OS=Macrococcus caseolyticus... [more]
DNAJ_LISW64.059e-3435.98Chaperone protein dnaJ OS=Listeria welshimeri sero... [more]
DNAJ_LACLA6.923e-3434.53Chaperone protein dnaJ OS=Lactococcus lactis subsp... [more]
DNAJ_CLOAB6.923e-3437.21Chaperone protein dnaJ OS=Clostridium acetobutylic... [more]
DNAJ_LACSS9.042e-3435.05Chaperone protein dnaJ OS=Lactobacillus sakei subs... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3BA03FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873460 ID=FC873460; Name=FC873460; organism=Citrus clementina; type=EST; length=691bp
TAACGGCACCAGCTATAATCTTTTTGATTTTGTTAATGTCTTCTTGTTTT
GATTATGCAGTATCATCCGGATATCAACAAGAGTCCTGGAGCTGAAGAGA
AGTTCAAAGAGATAAGTTCTGCGTATGAGGTCCTTTCAGATGATGAGAAA
AGATCTGTATATGATCGCTTTGGTGAGGCAGGTATAACTGGAGAATATGA
TGGATTGAGCAACACTTCACAGGGGGTGGATCCTTTTGAATTATATAGTG
CATTCTTTGGTGGTTCAGATGGGCTCTTTGGAGGAGTGGGTGAGGCCGGA
GGCATTAACTTCAATTTTGGAAACAAAGGAAATTTTGGTCTTGACATTCG
GTATGACCTGCATTTGAGCTTTGAAGAATCAATTTTTGGAGGACAGCGTG
GGATTGAAGTTTCTTGTTTTGAAACATGTGATAGTTGTGGTGGAACTGGT
GCCAAATCTAGTAATTGCATACAATCATGTAAAGCTTGTTGGGGTAGAGG
AGGAGTACTGAAAACTCAGAGAACACCATTTGGATTAATCTCACAGGTAT
CTACATGCTCTAAGTGTGGTGGTGATGGTAAGATAATAATTGATCATTGC
CGAAGATGTGGTGGTAATGGTGAAGTACAGTCAAAAAGAAGTATGAAAGT
GGTTATCCCACCTGGTGTTAGTAACGGAGCCACCATGCAAA
back to top