FC873466

Overview
NameFC873466
Unique NameFC873466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1641..2224. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_SYNS9 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9902) GN=groL1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.547e-19
Identity = 48/100 (48.00%), Postives = 68/100 (68.00%), Query Frame = 2
Query:    8 ALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 307
            AL  PL  IA+NAG NG+VV+E V S  N++ GYNAA G+Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG  M    + Y
Sbjct:  446 ALTAPLMRIAENAGANGAVVAENVKSRSNNE-GYNAANGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDAAPAGGGMGGGDFDY 544          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_THEVL (60 kDa chaperonin 2 OS=Thermosynechococcus vulcanus GN=groL2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.446e-19
Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 2
Query:    8 ALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 298
            AL  P+  IA NAG  G+VV E V + D   YG+NAATG YEDL++AGIIDP KVVR  L++A S+A   L ++ +VVE  EP+PA PA   M   G
Sbjct:  445 ALAAPVAQIADNAGAEGAVVVENVRAGD-FNYGFNAATGAYEDLVSAGIIDPAKVVRSALQNAGSIAGMVLTTEALVVEKPEPKPAAPANGGMGGMG 540          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_THEEB (60 kDa chaperonin 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.446e-19
Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 2
Query:    8 ALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 298
            AL  P+  IA NAG  G+VV E V + D   YG+NAATG YEDL++AGIIDP KVVR  L++A S+A   L ++ +VVE  EP+PA PA   M   G
Sbjct:  445 ALAAPVAQIADNAGAEGAVVVENVRAGD-FNYGFNAATGAYEDLVSAGIIDPAKVVRSALQNAGSIAGMVLTTEALVVEKPEPKPAAPANGGMGGMG 540          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_RHORT (60 kDa chaperonin 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.877e-19
Identity = 47/101 (46.53%), Postives = 71/101 (70.30%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 304
            +RAL  P++ IA+NAGV+G+VV+ K+L + +  +GYNA TG YE+L+ AG+IDPTKVVR  L+ A+S+A   + ++ +V EI E + AMP+ +     G G
Sbjct:  444 RRALQAPVRQIAENAGVDGAVVAGKLLENSDTDFGYNAQTGIYENLVTAGVIDPTKVVRAALQGAASIAGLLITTEAMVAEIPEKKDAMPSPDMGGMGGMG 544          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.877e-19
Identity = 53/99 (53.54%), Postives = 67/99 (67.68%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 298
            KRAL  PL+ IA NAGV GSV+  +V  SD +  GYNAATG +EDL+AAGIIDP KVVR  L++A+S+A   L ++ +VVE  E + A PA   M   G
Sbjct:  443 KRALEAPLRQIADNAGVEGSVIVSRVKDSDFNT-GYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKKAAAPADAGMGGMG 540          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_SULMW (60 kDa chaperonin OS=Sulcia muelleri (strain GWSS) GN=groL PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.676e-19
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 304
            KR+L  PL+ I  NAG  GSV+  KV    N ++GY+A  G Y+++++ GIIDPTKV R  LE+A+SV+   L ++CV+ EIK+ EPAMP    M NSG G
Sbjct:  444 KRSLQEPLRQIVANAGEEGSVIVAKVAEGKN-EFGYDAKLGEYKNMISEGIIDPTKVTRVALENAASVSGMLLTTECVITEIKKEEPAMP---QMPNSGMG 540          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_DESOH (60 kDa chaperonin OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=groL PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.003e-18
Identity = 53/102 (51.96%), Postives = 67/102 (65.69%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMDNSGYG 304
            RA+  PL+ IA NAGV GSVV EKV  ++   +GYNAATG+Y DL+AAG+IDPTKVVR  L++A SVA   L ++ ++ E   KE   AMP G      G G
Sbjct:  444 RAIEEPLRRIANNAGVEGSVVIEKV-KNETGSFGYNAATGDYGDLIAAGVIDPTKVVRFALQNACSVASVMLTTEAMIAEKPSKEEPAAMPGGGMGGMGGMG 544          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_BACFR (60 kDa chaperonin OS=Bacteroides fragilis GN=groL PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.003e-18
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 283
            KRA+  PL+ I  NAG  G+VV +KV S     +GYNA T  YE++ AAG++DP KV R  LE+A+S+A  FL ++CV+VE KE +P MP G P
Sbjct:  444 KRAIEEPLRQIVANAGKEGAVVVQKV-SEGKGDFGYNARTDVYENMHAAGVVDPAKVTRVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAP 536          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_BACFN (60 kDa chaperonin OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=groL PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.003e-18
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 283
            KRA+  PL+ I  NAG  G+VV +KV S     +GYNA T  YE++ AAG++DP KV R  LE+A+S+A  FL ++CV+VE KE +P MP G P
Sbjct:  444 KRAIEEPLRQIVANAGKEGAVVVQKV-SEGKGDFGYNARTDVYENMHAAGVVDPAKVTRVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAP 536          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_SYNPW (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH7803) GN=groL2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.003e-18
Identity = 47/100 (47.00%), Postives = 68/100 (68.00%), Query Frame = 2
Query:    8 ALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 307
            AL  PL  IA+NAGVNG+VV+E V +   ++ GYNAA G+Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG  M    + Y
Sbjct:  446 ALTAPLMRIAENAGVNGAVVAENVKAKSFNE-GYNAANGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKEAAPAGGGMGGGDFDY 544          
The following BLAST results are available for this feature:
BLAST of FC873466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_SYNS91.547e-1948.0060 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH602_THEVL3.446e-1952.5860 kDa chaperonin 2 OS=Thermosynechococcus vulcanu... [more]
CH602_THEEB3.446e-1952.5860 kDa chaperonin 2 OS=Thermosynechococcus elongat... [more]
CH602_RHORT5.877e-1946.5360 kDa chaperonin 2 OS=Rhodospirillum rubrum (stra... [more]
CH602_ANAVT5.877e-1953.5460 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH60_SULMW7.676e-1949.5060 kDa chaperonin OS=Sulcia muelleri (strain GWSS)... [more]
CH60_DESOH1.003e-1851.9660 kDa chaperonin OS=Desulfococcus oleovorans (str... [more]
CH60_BACFR1.003e-1851.0660 kDa chaperonin OS=Bacteroides fragilis GN=groL ... [more]
CH60_BACFN1.003e-1851.0660 kDa chaperonin OS=Bacteroides fragilis (strain ... [more]
CH602_SYNPW1.003e-1847.0060 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BA09FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873466 ID=FC873466; Name=FC873466; organism=Citrus clementina; type=EST; length=584bp
TAAAAGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGTG
TTAATGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAA
TATGGATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGG
AATTATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCT
CGGTGGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAG
GAGCCTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATA
TGGATACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTC
TGACTTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTT
CTTCTTGTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTG
AGGATAGCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACA
ATTGCAATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCGC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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