FC873466
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_SYNSC (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9605) GN=groL2 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.891e-17 Identity = 45/100 (45.00%), Postives = 66/100 (66.00%), Query Frame = 2 Query: 8 ALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 307 AL PL IA+NAG NG+VV+E V + + G+NAA+G Y D++AAGI+DP KV R L++A+S+A L ++C+V ++ E + A PAG M + Y Sbjct: 446 ALTAPLMRIAENAGANGAVVAENVKARAGAE-GFNAASGEYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKEAAPAGGGMGGGDFDY 544
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_ZYMMO (60 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=3 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17 Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 2 Query: 2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE--PEPAMPAG 277 +RAL P++ IA+NAG +G+VV+ K++ ++ K G+NA T YEDL A G+IDPTKVVR L+ A+SVA + ++ V ++ E P PAMP G Sbjct: 444 RRALQAPVRQIAQNAGFDGAVVAGKLIDGNDDKIGFNAQTEKYEDLAATGVIDPTKVVRTALQDAASVAGLLITTEAAVGDLPEDKPAPAMPGG 537
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_SYNR3 (60 kDa chaperonin OS=Synechococcus sp. (strain RCC307) GN=groL PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17 Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 2 Query: 5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHK---YGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 286 +AL PLK IA+NAG NGSVV+E V HK G+NAA+ Y D++AAGIIDP KV R L++A+S+A L ++C+VV++ E + A PAG M Sbjct: 445 QALDAPLKRIAENAGANGSVVAENV----RHKPFSEGFNAASNEYVDMLAAGIIDPAKVTRSGLQNAASIAGMVLTTECIVVDLPEKKEAAPAGGGM 537
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_RHOS1 (60 kDa chaperonin OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=groL PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17 Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 2 Query: 2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 283 +RAL PL+ IA+NAGV+GSVV+ KV S+ +G+NA T Y D+ G+IDP KVVR LE A+SVA + ++ ++ + +PEP PAG P Sbjct: 444 RRALEAPLRQIAQNAGVDGSVVAGKVRESNEKSFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVASLLITTEAMIAD--KPEPKSPAGGP 535
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_NITSB (60 kDa chaperonin OS=Nitratiruptor sp. (strain SB155-2) GN=groL PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17 Identity = 47/100 (47.00%), Postives = 63/100 (63.00%), Query Frame = 2 Query: 5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 304 RA+ PLK IA+NAG + VV+ V +++N G+NAATG Y D+ AGI+DP KV R L++A SVA L ++ V EIKE +PA PA + G G Sbjct: 444 RAIKAPLKQIAENAGFDPGVVANNVENAENENTGFNAATGEYVDMFEAGIVDPAKVERVALQNAVSVASLLLTTEATVSEIKEDKPAAPAPDMGGMGGMG 543
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_HYDS0 (60 kDa chaperonin OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=groL PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17 Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 2 Query: 17 YPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 286 YPLK IA NAG GS+V EKV + YG++AA G Y+D++ AGIIDPTKVVR L++A+S A T L ++ ++ E+ E + P M Sbjct: 449 YPLKQIAYNAGYEGSLVLEKVYEDQDKNYGFDAANGEYKDMVKAGIIDPTKVVRTALQNAASAAGTMLTAEALIAELPEKKEKTPTPTDM 538
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_DICDI (60 kDa heat shock protein, mitochondrial OS=Dictyostelium discoideum GN=hspA PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17 Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = 2 Query: 8 ALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE--PEPAMP 271 AL P K IA NAGV GSVV ++LS + +YGYNA G YE+++ AGIIDPTKVVR L A+SVA ++ +VVEIK+ P P MP Sbjct: 462 ALLIPCKTIANNAGVEGSVVIGRLLSKRDFEYGYNAQKGVYENMIQAGIIDPTKVVRTALIDAASVASLMTTTEAMVVEIKKDTPMPQMP 551
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_DESDG (60 kDa chaperonin OS=Desulfovibrio desulfuricans (strain G20) GN=groL PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17 Identity = 48/100 (48.00%), Postives = 65/100 (65.00%), Query Frame = 2 Query: 2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE-IKEPEPAMPAGNPMDNSG 298 +RA+ PL+ IA NAG GS++ EKV + +G+NAATG +EDL+AAG+IDP KV R L++A+SVA L ++C + E KE PA PA M G Sbjct: 444 RRAIEEPLRQIAANAGFEGSIICEKVKEGKD-AFGFNAATGEFEDLIAAGVIDPKKVSRIALQNAASVASLLLTTECAIAEKPKEDAPAAPAMGGMGGMG 542
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_ACICJ (60 kDa chaperonin OS=Acidiphilium cryptum (strain JF-5) GN=groL PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17 Identity = 43/101 (42.57%), Postives = 69/101 (68.32%), Query Frame = 2 Query: 2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 304 ++A+ P++ IA+NAG +G+V+S KVL +D++ +G++A +G ++D++ AGIIDPTKVVR L+ A+SVA + ++ +V E PE PAG G G Sbjct: 444 RKAVLAPMRQIAENAGEDGAVISGKVLDNDDYSFGFDAQSGEFKDMVKAGIIDPTKVVRTALQDAASVAGLLITTEAMVAE--RPEKKAPAGGDAGMGGMG 542
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_TRIEI (60 kDa chaperonin 2 OS=Trichodesmium erythraeum (strain IMS101) GN=groL2 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17 Identity = 45/101 (44.55%), Postives = 64/101 (63.37%), Query Frame = 2 Query: 5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 307 RAL PLK IA+NAG NG+V+ E+V D + G+NAA + D+ AGI+DP KV R L++A+S+A L ++C+VV+ EP+ PAG M + Y Sbjct: 445 RALLAPLKRIAENAGQNGAVIGERVKEKDFNT-GFNAANNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEPKENAPAGAGMGGGDFDY 544 The following BLAST results are available for this feature:
BLAST of FC873466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873466 ID=FC873466; Name=FC873466; organism=Citrus clementina; type=EST; length=584bpback to top |