FC873466

Overview
NameFC873466
Unique NameFC873466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1641..2224. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_MYCLE (60 kDa chaperonin 2 OS=Mycobacterium leprae GN=groL2 PE=3 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 4.359e-14
Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 298
            K AL  PLK IA N+G+   VV+EKV +  +  +G NAATG YEDL+ AG+ DP KV R  L++A+S+A  FL ++ VV + K  + A PA +P    G
Sbjct:  441 KVALEAPLKQIAFNSGMEPGVVAEKVRNL-SVGHGLNAATGEYEDLLKAGVADPVKVTRSALQNAASIAGLFLTTEAVVAD-KPEKTAAPASDPTGGMG 537          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_FRASC (60 kDa chaperonin 2 OS=Frankia sp. (strain CcI3) GN=groL2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.359e-14
Identity = 46/102 (45.10%), Postives = 63/102 (61.76%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 307
            +RAL  PL+ IA NAG+ G VV EKV +     +G +AATG + +++ AGIIDPTKV R  L++A+S+A  FL ++ VV E  +PE    A  P    G  Y
Sbjct:  443 RRALTEPLRQIAVNAGLEGGVVVEKVRNLQPG-WGLDAATGEHVNMLEAGIIDPTKVTRSALQNAASIAGLFLTTEAVVAE--KPEEKETAAAPAGGGGLEY 541          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_PROAC (60 kDa chaperonin 1 OS=Propionibacterium acnes GN=groL1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.359e-14
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 2
Query:   20 PLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 298
            PLK IA NAG+ G VV+EKV      + G NAA   Y D++ AGIIDP KV R  L++A+S+A  FL ++ V+ +  EP  A   G  MD  G
Sbjct:  447 PLKQIAINAGLEGGVVAEKVAGLPAGQ-GLNAANDEYVDMVEAGIIDPAKVTRSALQNAASIAALFLTTEAVIADKPEPVKAPAGGGDMDGMG 538          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_ARTAT (60 kDa chaperonin 1 OS=Arthrobacter aurescens (strain TC1) GN=groL1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.359e-14
Identity = 45/99 (45.45%), Postives = 60/99 (60.61%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 298
            K A+  PLK IA NAG+   VV +KV    +  +G NAATG YEDL+AAG+ DP KV R  L++A+S+A  FL ++ VV +  E     P G+ M   G
Sbjct:  442 KVAIDAPLKQIAFNAGLEPGVVVDKVRGLPSG-HGLNAATGVYEDLLAAGVNDPVKVTRSALQNAASIAGLFLTTEAVVADKPEKNAPAPGGDDMGGMG 539          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_XANCH (60 kDa chaperonin OS=Xanthomonas campestris pv. phaseoli GN=groL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.693e-14
Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 298
            RA+  PL+ I  NAG   SV+  KV     + YGYNAA G + D++  GI+DPTKV R  L++A+S+A   + ++ +V +  K+ EP MPAG  M   G
Sbjct:  445 RAMEAPLREIVANAGEEPSVILNKVKEGSGN-YGYNAANGEFGDMVQFGILDPTKVTRSALQNAASIAGLMITTEAMVADAPKKDEPVMPAGGGMGGMG 542          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_XANAC (60 kDa chaperonin OS=Xanthomonas axonopodis pv. citri GN=groL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.693e-14
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 298
            RA+  PL+ I  NAG   SV+  KV     + YGYNAA G + D++  GI+DPTKV R  L++A+S+A   + ++ +V +  K+ EPA+PAG  M   G
Sbjct:  445 RAMEAPLREIVANAGEEPSVILNKVKEGTGN-YGYNAANGEFGDMVEFGILDPTKVTRSALQNAASIAGLMITTEAMVADAPKKDEPALPAGGGMGGMG 542          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_SYNWW (60 kDa chaperonin OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=groL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.693e-14
Identity = 45/103 (43.69%), Postives = 64/103 (62.14%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAGNPMDNSGYG 304
            K+A+  PL+ IA NAG+ GSVV EKV  ++    GYNA TG YE ++AAGIIDP KV R  +++A+S++   L ++ VV E+  ++    M AG      G G
Sbjct:  442 KKAMEEPLRQIANNAGIEGSVVVEKVKEAETG-IGYNALTGVYESMIAAGIIDPAKVTRSAVQNAASISAMVLTTEAVVSELPGEDEMKGMGAGGMGGMGGMG 543          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_STRP8 (60 kDa chaperonin OS=Streptococcus pyogenes serotype M18 GN=groL PE=3 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 5.693e-14
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE---PEPAMPAG 277
            RAL  P++ IA NAG  GSV+ +K+ +S     G+NAATG + D++  GIIDP KV R  L++A+SVA   L ++ VV    E   P PAMPAG
Sbjct:  442 RALEEPVRQIALNAGYEGSVIIDKLKNSPAGT-GFNAATGEWVDMIKTGIIDPVKVTRSALQNAASVASLILTTEAVVANKPEPAAPAPAMPAG 534          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_STRMU (60 kDa chaperonin OS=Streptococcus mutans GN=groL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.693e-14
Identity = 47/101 (46.53%), Postives = 63/101 (62.38%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP-MDNSGYG 304
            RAL  P++ IAKNAG  GSV+ +K L + +   G+NAA G + D++ AGIIDP KV R  L++A+SVA   L ++ VV +   P P  PA  P MD S  G
Sbjct:  442 RALEEPVRQIAKNAGYEGSVIIDK-LKNSSAGTGFNAANGEWVDMIDAGIIDPVKVTRSALQNAASVASLILTTEAVVAD--HPAPEAPAAAPAMDPSMMG 539          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_RICTY (60 kDa chaperonin OS=Rickettsia typhi GN=groL PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.693e-14
Identity = 44/98 (44.90%), Postives = 58/98 (59.18%), Query Frame = 2
Query:    8 ALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVV-EIKEPEPAMPAGNPMDNSG 298
            AL  PLK I KNAG NG VV  K+L  ++  YG+NA    Y D++ AGIIDP KVVR  L+ A+SVA   + ++ ++V E  + E  MP    M   G
Sbjct:  446 ALKDPLKQIVKNAGENGGVVVGKLLEHNDKNYGFNAQDMQYVDMIKAGIIDPAKVVRTALQDAASVASLIITTETLIVDEPSDKEEPMPMRGGMGGMG 543          
The following BLAST results are available for this feature:
BLAST of FC873466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_MYCLE4.359e-1446.4660 kDa chaperonin 2 OS=Mycobacterium leprae GN=gro... [more]
CH602_FRASC4.359e-1445.1060 kDa chaperonin 2 OS=Frankia sp. (strain CcI3) G... [more]
CH601_PROAC4.359e-1446.2460 kDa chaperonin 1 OS=Propionibacterium acnes GN=... [more]
CH601_ARTAT4.359e-1445.4560 kDa chaperonin 1 OS=Arthrobacter aurescens (str... [more]
CH60_XANCH5.693e-1442.4260 kDa chaperonin OS=Xanthomonas campestris pv. ph... [more]
CH60_XANAC5.693e-1442.4260 kDa chaperonin OS=Xanthomonas axonopodis pv. ci... [more]
CH60_SYNWW5.693e-1443.6960 kDa chaperonin OS=Syntrophomonas wolfei subsp. ... [more]
CH60_STRP85.693e-1447.8760 kDa chaperonin OS=Streptococcus pyogenes seroty... [more]
CH60_STRMU5.693e-1446.5360 kDa chaperonin OS=Streptococcus mutans GN=groL ... [more]
CH60_RICTY5.693e-1444.9060 kDa chaperonin OS=Rickettsia typhi GN=groL PE=3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BA09FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873466 ID=FC873466; Name=FC873466; organism=Citrus clementina; type=EST; length=584bp
TAAAAGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGTG
TTAATGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAA
TATGGATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGG
AATTATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCT
CGGTGGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAG
GAGCCTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATA
TGGATACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTC
TGACTTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTT
CTTCTTGTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTG
AGGATAGCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACA
ATTGCAATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCGC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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