FC873466

Overview
NameFC873466
Unique NameFC873466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1641..2224. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_ROSDO (60 kDa chaperonin 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=groL2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 45/101 (44.55%), Postives = 65/101 (64.36%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 304
            ++AL  PL+ IA+NAGV+GSVV+ K+  SD+ K+G+NA T  Y D+ A G+IDP KVVR  L+ A+S+A   + ++ +V +    E A P G   D  G G
Sbjct:  444 RKALEAPLRQIAENAGVDGSVVAGKIRESDDLKFGFNAQTEEYGDMFAFGVIDPAKVVRTALQDAASIAGLLITTEAMVADRPAKEGAAPGGGMPDMGGMG 544          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH602_GLUDA (60 kDa chaperonin 2 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 43/90 (47.78%), Postives = 65/90 (72.22%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 271
            ++AL  PL+ IA+NAG +G+VV+ KVL +  + +G++A  G ++DL+AAGIIDPTKVVR  L+ A+SV    + ++ +V E  EP+PA P
Sbjct:  444 RKALQAPLRQIAENAGEDGAVVAGKVLENGAYNFGFDAQIGEFKDLVAAGIIDPTKVVRTALQDAASVGSLLITTEVLVTEKAEPKPAAP 533          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_SYNY3 (60 kDa chaperonin 1 OS=Synechocystis sp. (strain PCC 6803) GN=groL1 PE=1 SV=4)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 49/99 (49.49%), Postives = 67/99 (67.68%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGY 301
            RAL  PLK IA+NAG NG+V+SE+V   +    GYNAA+  Y D++AAGI+DP KV R  L++A+S+A   L ++C+VV+  E E A PAG P  +  Y
Sbjct:  445 RALPAPLKRIAENAGQNGAVISERVKEKE-FNVGYNAASLEYVDMLAAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEKEKA-PAGAPGGDFDY 541          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_SORC5 (60 kDa chaperonin 1 OS=Sorangium cellulosum (strain So ce56) GN=groL1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 304
            +RA+  PL+ IA+NAGV+G+VV+EKV S     +GYNAAT +YEDL+A G+IDP KVVR  + +A+SVA   L ++ +V E  + E A   G P    G G
Sbjct:  443 RRAVEAPLRQIAQNAGVDGTVVAEKVRSGAP-TFGYNAATDSYEDLLAGGVIDPAKVVRHAISNAASVAALMLTTEALVAEKPKKEKAAAGGAPGGMGGMG 542          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_RHOSH (60 kDa chaperonin 1 OS=Rhodobacter sphaeroides GN=groL1 PE=1 SV=4)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 283
            +RAL  PL+ IA+NAGV+GSVV+ KV  S+   +G+NA T  Y D+   G+IDP KVVR  LE A+SVA   + ++ ++ +  +PEP  PAG P
Sbjct:  444 RRALEAPLRQIAQNAGVDGSVVAGKVRESNEKSFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVASLLITTEAMIAD--KPEPKSPAGGP 535          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_RHOS4 (60 kDa chaperonin 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=groL1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 283
            +RAL  PL+ IA+NAGV+GSVV+ KV  S+   +G+NA T  Y D+   G+IDP KVVR  LE A+SVA   + ++ ++ +  +PEP  PAG P
Sbjct:  444 RRALEAPLRQIAQNAGVDGSVVAGKVRESNEKSFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVASLLITTEAMIAD--KPEPKSPAGGP 535          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH601_RHOP2 (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain HaA2) GN=groL1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = 2
Query:    5 RALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 298
            +AL  P++ IA+NAGV GS+V  K+L + +  +G++A T +Y D++A GI+DP KVVR  L+ ASSVA   + ++ +V E+ KE  PAMP G  M   G
Sbjct:  445 KALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEDYVDMLAKGIVDPAKVVRTALQDASSVAALLVTTEAMVAELPKEAAPAMPGGGGMGGMG 543          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_WOLRE (60 kDa chaperonin OS=Wolinella recta GN=groL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 48/101 (47.52%), Postives = 63/101 (62.38%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE--PEPAMPAGNPMDNSG 298
            +RAL  PL+ IA+NAG +  VV+  V  S +  YG+NAATG Y D+  AGIIDP KV R  L++A SVA   L ++  + E+KE  P PAMP  + M   G
Sbjct:  441 RRALTAPLRQIAENAGFDAGVVANSVSVSKDDNYGFNAATGEYVDMFKAGIIDPVKVERIALQNAVSVASLLLTTEATISELKEDKPMPAMPDMSGMGGMG 541          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_SPHWW (60 kDa chaperonin OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=groL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 46/102 (45.10%), Postives = 68/102 (66.67%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSGYG 304
            +RA+  P+K IA+NAG +G+VV+  +L  ++   G+NAAT  YE+L+AAG+IDPTKVVR  L+ A+SVA   + ++  + E+ E + PAMP G      G G
Sbjct:  444 RRAISAPVKQIAQNAGQDGAVVAGNLLRENDETKGFNAATDVYENLVAAGVIDPTKVVRTALQDAASVAGLLITTEATIAELPEDKAPAMPGGGMGGMGGMG 545          
BLAST of FC873466 vs. ExPASy Swiss-Prot
Match: CH60_PARDP (60 kDa chaperonin OS=Paracoccus denitrificans (strain Pd 1222) GN=groL1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 2
Query:    2 KRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 304
            +RAL  P++ IA+NAGV+G+VV+ KV  S +  +G+NA T  Y D+   G+IDP KVVR  LE A+SVA   + ++ ++ E  +PEP  PAG   D  G G
Sbjct:  444 RRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAE--KPEPKAPAGGMPDMGGMG 542          
The following BLAST results are available for this feature:
BLAST of FC873466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_ROSDO2.469e-1744.5560 kDa chaperonin 2 OS=Roseobacter denitrificans (... [more]
CH602_GLUDA2.469e-1747.7860 kDa chaperonin 2 OS=Gluconacetobacter diazotrop... [more]
CH601_SYNY32.469e-1749.4960 kDa chaperonin 1 OS=Synechocystis sp. (strain P... [more]
CH601_SORC52.469e-1748.5160 kDa chaperonin 1 OS=Sorangium cellulosum (strai... [more]
CH601_RHOSH2.469e-1747.8760 kDa chaperonin 1 OS=Rhodobacter sphaeroides GN=... [more]
CH601_RHOS42.469e-1747.8760 kDa chaperonin 1 OS=Rhodobacter sphaeroides (st... [more]
CH601_RHOP22.469e-1745.4560 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH60_WOLRE3.225e-1747.5260 kDa chaperonin OS=Wolinella recta GN=groL PE=3 ... [more]
CH60_SPHWW3.225e-1745.1060 kDa chaperonin OS=Sphingomonas wittichii (strai... [more]
CH60_PARDP3.225e-1745.5460 kDa chaperonin OS=Paracoccus denitrificans (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BA09FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873466 ID=FC873466; Name=FC873466; organism=Citrus clementina; type=EST; length=584bp
TAAAAGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGTG
TTAATGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAA
TATGGATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGG
AATTATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCT
CGGTGGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAG
GAGCCTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATA
TGGATACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTC
TGACTTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTT
CTTCTTGTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTG
AGGATAGCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACA
ATTGCAATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCGC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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