FC873507

Overview
NameFC873507
Unique NameFC873507
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873507_ssr150 microsatellite FC873507_ssr150:150..169. BLAST: Citrus ESTs to Prunus persica proteins V1
FC873507_ssr175 microsatellite FC873507_ssr175:175..206. BLAST: Citrus ESTs to Prunus persica proteins V1
FC873507_ssr218 microsatellite FC873507_ssr218:218..229. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10162 contig Ccv1_Contig10162:1..617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.503e-15
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 1
Query:  223 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            +   A+TTPDRQ ACNCLK  AGS+  +NP NA  LP  CGV++PYKIS ST+C+ V+
Sbjct:   58 INGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 1
Query:  235 ARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            A+TT DRQTACNCLKQ + S+P +N NNA  LP  CGV++PYKIS ST+C+ V+
Sbjct:   64 AKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 37/58 (63.79%), Postives = 42/58 (72.41%), Query Frame = 1
Query:  223 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            + +AA+TTPDRQ AC CLK A  SI  +N  NA   P  CGVSIPYKIS STDCSKV+
Sbjct:   59 LNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 1
Query:  229 AAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            AAA TT DRQ ACNCLK AAG+I NLNP NA  LP  C V+IPYKIS +T+C+ ++
Sbjct:   62 AAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = 1
Query:  232 AARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            +ARTT DRQ AC CLK AAG+I  +N   A GLP  CGV+IPYKIS STDCSKV+
Sbjct:   60 SARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.183e-14
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 1
Query:  235 ARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            ARTTPDRQ AC CL  AA S P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:   64 ARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.183e-14
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 1
Query:  235 ARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            ARTTPDRQ AC CL  AA S P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:   64 ARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.864e-14
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 1
Query:  235 ARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            ARTTPDRQ AC CL  AA + P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:   64 ARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.352e-14
Identity = 37/55 (67.27%), Postives = 40/55 (72.73%), Query Frame = 1
Query:  232 AARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            AA+TT DRQ ACNCLK A  SI  LN N A GLP  CGVS+PYKIS STDC  V+
Sbjct:   37 AAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 1
Query:  232 AARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 393
            AARTT DR+ ACNCLK AA  +  LN  NA  +P  CGVSIPY IS STDCS+V
Sbjct:   66 AARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
The following BLAST results are available for this feature:
BLAST of FC873507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
NLTP_PYRCO7.503e-1558.62Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP_PRUAV1.672e-1462.96Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_HELAN1.672e-1463.79Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP3_LENCU1.672e-1464.29Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP1_TOBAC1.672e-1467.27Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTPB_BRAOT2.183e-1468.52Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP2_BRANA2.183e-1468.52Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP1_BRANA4.864e-1466.67Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
LTP1_MORNI6.352e-1467.27Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_MAIZE8.296e-1464.81Non-specific lipid-transfer protein OS=Zea mays PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BC08FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873507 ID=FC873507; Name=FC873507; organism=Citrus clementina; type=EST; length=617bp
TTTTCTTTTATCATAGTAGTGCTGTTGAGTTTTAAATTCACTCTGTATCT
TTGTCCTATGGAGACCGCTATGTATTAGTATTATATAGTGCTTAACCTTC
CGTAATGGTAGAAGTGACTTATACATCATTTGCAATTGGAAATATTTTCA
TATATATATATATATATATGTATGTGTATGTATGTATGTATGTATGTATG
TATGTATATTTGTGTGTGGTGGGTGGGTGCGGCCGCCAGAACCACACCTG
ACCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCCGGATCAATCCCT
AACCTCAACCCTAATAATGCTGTTGGTCTTCCACGAGCTTGTGGAGTCAG
CATTCCTTACAAGATCAGCATCTCTACTGACTGCTCTAAGGTCCGGTGAA
CAGGAATCTGGGCTGTTGATTTTCATATTTAAGTTGACGGAGTAGAATAA
ATGTATAATAATAAGGACATTTTTGTGTCCGAATTATGAGTCTCTCTCTA
CACTTTGTACTGCGAGTCTCGTTCCCGCCCTCGTTTCATGTTGTGTCTTA
TTGTCTTTGCTTTTCATGTCATCGTCAGTTTGTGTCTATTCTGTTTATTA
AATGAAATCTTGCCTTG
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