FC873507

Overview
NameFC873507
Unique NameFC873507
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873507_ssr150 microsatellite FC873507_ssr150:150..169. BLAST: Citrus ESTs to Prunus persica proteins V1
FC873507_ssr175 microsatellite FC873507_ssr175:175..206. BLAST: Citrus ESTs to Prunus persica proteins V1
FC873507_ssr218 microsatellite FC873507_ssr218:218..229. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10162 contig Ccv1_Contig10162:1..617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1
Query:  223 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 393
            + +AARTT DR+ ACNCLK AA  I  LN   A  +P  CGVSIPY IS STDCS+V
Sbjct:   65 LNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 1
Query:  232 AARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 393
            ++RTT DR+  C+CLK AAG++  +NPNNA  LP  CGV+IPYKIS ST+C+ +
Sbjct:   37 SSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.172e-13
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1
Query:  232 AARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            AA++  DR+TAC CLK AA +I  ++   A GLP ACGV+IPYKIS STDCSKV+
Sbjct:   60 AAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1
Query:  223 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            + + A+TTPDRQ AC C++  A SI  LNP+ A GLP  CGVSIPY IS+ST+C+ ++
Sbjct:   58 LNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 1
Query:  223 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            +  AARTT DR+ ACNCLK +AGSI  L P N   LP  CGV +PY IS ST+C+ +R
Sbjct:   60 LNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = 1
Query:  223 VGAAARTTPDRQTACNCLKQAAGSI-PNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            + + ARTTPDRQ AC CL+ AA ++ PNLN   A G+P+ACGVS+P+ IS +T+C+ V+
Sbjct:   60 LNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 1
Query:  232 AARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            AA+T  DR+TAC CLK AA SI  ++   A GLP  CGV+IPYKIS STDCS V+
Sbjct:   60 AAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 1
Query:  223 VGAAARTTPDRQTACNCLKQAAGSIPN-LNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            + + A+TTPDRQ ACNC++ AA ++ + LN   A G+P+ACGV+IPYKIS ST+C  VR
Sbjct:   60 LNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 1
Query:  235 ARTTPDRQTACNCLKQAAGSIP--NLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            A+TT DRQ+ CNCLKQA   IP  N N   A GLP  CGV+IPYKIS STDC  ++
Sbjct:   68 AQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 1
Query:  235 ARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            A+TT DRQTAC CLK AA S   L+   A  LP  C V+IPYKIS STDCSKV+
Sbjct:   61 AQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
The following BLAST results are available for this feature:
BLAST of FC873507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
NLTP2_SORBI5.377e-1361.40Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP1_PHAAU5.377e-1357.41Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP2_TOBAC9.172e-1361.82Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP3_ARATH1.198e-1255.17Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP1_LENCU1.198e-1256.90Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLTPA_BRAOT1.565e-1254.24Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP2_SOLLC1.565e-1261.82Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP1_ARATH2.669e-1255.93Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP3_PRUDU5.945e-1260.71Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP2_SOLPN5.945e-1262.96Non-specific lipid-transfer protein 2 OS=Solanum p... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BC08FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873507 ID=FC873507; Name=FC873507; organism=Citrus clementina; type=EST; length=617bp
TTTTCTTTTATCATAGTAGTGCTGTTGAGTTTTAAATTCACTCTGTATCT
TTGTCCTATGGAGACCGCTATGTATTAGTATTATATAGTGCTTAACCTTC
CGTAATGGTAGAAGTGACTTATACATCATTTGCAATTGGAAATATTTTCA
TATATATATATATATATATGTATGTGTATGTATGTATGTATGTATGTATG
TATGTATATTTGTGTGTGGTGGGTGGGTGCGGCCGCCAGAACCACACCTG
ACCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCCGGATCAATCCCT
AACCTCAACCCTAATAATGCTGTTGGTCTTCCACGAGCTTGTGGAGTCAG
CATTCCTTACAAGATCAGCATCTCTACTGACTGCTCTAAGGTCCGGTGAA
CAGGAATCTGGGCTGTTGATTTTCATATTTAAGTTGACGGAGTAGAATAA
ATGTATAATAATAAGGACATTTTTGTGTCCGAATTATGAGTCTCTCTCTA
CACTTTGTACTGCGAGTCTCGTTCCCGCCCTCGTTTCATGTTGTGTCTTA
TTGTCTTTGCTTTTCATGTCATCGTCAGTTTGTGTCTATTCTGTTTATTA
AATGAAATCTTGCCTTG
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