FC873510

Overview
NameFC873510
Unique NameFC873510
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length808
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873510_ssr84 microsatellite FC873510_ssr84:84..95. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14845 contig Ccv1_Contig14845:549..1353. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873510 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.794e-11
Identity = 34/76 (44.74%), Postives = 52/76 (68.42%), Query Frame = 3 
Query:  165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 392
            +++VG L++   + +LE +F + G+V E  VV DRES RSRGFGFVT+ + E+  +A+ ++NG  + GR IRV  A
Sbjct:    7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82
[Close]
BLAST of FC873510 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.261e-11
Identity = 32/76 (42.11%), Postives = 53/76 (69.74%), Query Frame = 3 
Query:  165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 392
            +++VG LS+  ++ +LE +F + G++ E  VV DRE+ RSRGFGFVT+ + ++  +A+ ++NG  + GR IRV  A
Sbjct:    7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
[Close]
BLAST of FC873510 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.261e-11
Identity = 32/76 (42.11%), Postives = 53/76 (69.74%), Query Frame = 3 
Query:  165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 392
            +++VG LS+  ++ +LE +F + G++ E  VV DRE+ RSRGFGFVT+ + ++  +A+ ++NG  + GR IRV  A
Sbjct:    7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
The following BLAST results are available for this feature:
BLAST of FC873510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
CIRBP_XENTR4.794e-1144.74Cold-inducible RNA-binding protein OS=Xenopus trop... [more]
CIRBP_PONAB6.261e-1142.11Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
CIRBP_HUMAN6.261e-1142.11Cold-inducible RNA-binding protein OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BC11FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873510 ID=FC873510; Name=FC873510; organism=Citrus clementina; type=EST; length=808bp
CAAGTGTTGAGGATGTTGAAGCAGCTGCTCAGCAGTTCAATGGCTATGAA
CTCGAGGGCCGACCCCTGAGGGTGAACTCTGGACCTCCTCCTCCTAGGAG
GGAAGAATTCTCTCCCAGAGGGCCCAGAGGAGGTGGTGCTGGTGCGCCTT
CTAGTGGTGGCAACCGTGTTTATGTTGGTAACCTTTCATGGGGTGTTGAT
GATTTAGCTCTTGAGACTTTGTTTCGTGAGCAAGGGAAGGTTTTGGAAGC
CAAAGTGGTATATGACAGGGAGAGTGGTAGATCGCGGGGTTTCGGGTTTG
TGACTTACAGTTCTGCTGAAGAGGTTGACAATGCAATTGATTCCTTGAAT
GGTGTAGATTTGGCCGGTAGAGCAATTCGAGTCTCGGTGGCTGAAGCAAG
GCCACAAAGGCGTCAATTTTGAGCTGTGGCAGAAACTAGTTTTCAGTTGT
TTTGATTTTATCGTTAGTTATTTGTGTTGTTATAAGGCTGCTTATCAGTG
CTATCAAATCATCGGCTTCAAAGACAGATTCATGATTATTTGTTTTTGCA
TATGCGAAATGCATGTTGCCTTGTTATAATTTCTAACTATCATCATGAGC
CACAGAAATTTTGGAGCTGCATTATTCAGAACAGGATCCTTGCATCTGGC
ATTTTGATAATTCCATCTCTGTGACGCTTGCCAGATGAAGGGTAGCTTGA
GTTGTCTGTCACTAAGTTTTCATCCATGTTCTGAAAACTATAATTGAGAC
AAGAAATGATTATGTACCCTGAAATTTGACTTGATTTTACATAAAAAAAA
AAAAAAAA
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