FC873519
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP13_MOUSE (Collagenase 3 OS=Mus musculus GN=Mmp13 PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 8.473e-19 Identity = 56/116 (48.28%), Postives = 65/116 (56.03%), Query Frame = 3 Query: 3 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 338 TADI I F T +HGD PFDGP G LAHAF P PN G H D DE W +L VA HE+GH LGL HS A+M+P + +G L +DD+QGIQ LYG Sbjct: 161 TADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSSKGYNLFIVAAHELGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQFLYG 268
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP10_RAT (Stromelysin-2 OS=Rattus norvegicus GN=Mmp10 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.107e-18 Identity = 52/127 (40.94%), Postives = 71/127 (55.91%), Query Frame = 3 Query: 6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRF---HLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYP--SISSGSRKVELANDDIQGIQALYGNNPNFNGSSAP 371 ADI I F G+HGD PFDG +LAHA+ P G + H D DE W +L VA HE+GH LGL HS+ ++++MYP S+ + L+ DDI+GIQ+LYG P+ + + P Sbjct: 157 ADIMISFAVGEHGDFYPFDGVGQSLAHAYPPGPGFYGDAHFDDDEKW--------SLGPSGTNLFLVAAHELGHSLGLFHSNNKESLMYPVYRFSTSQANIRLSQDDIEGIQSLYGARPSSDATVVP 275
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP3_MOUSE (Stromelysin-1 OS=Mus musculus GN=Mmp3 PE=2 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 1.445e-18 Identity = 52/116 (44.83%), Postives = 65/116 (56.03%), Query Frame = 3 Query: 6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS--RKVELANDDIQGIQALYG 338 ADI I F G+HGD PFDGP LAHA++P NG H D DE W +L VA HE+GH LGL HS+ +A+MYP S + + L+ DD+ GIQ+LYG Sbjct: 157 ADIMISFAVGEHGDFVPFDGPGTVLAHAYAPGPGINGDAHFDDDERWT--------EDVTGTNLFLVAAHELGHSLGLYHSAKAEALMYPVYKSSTDLSRFHLSQDDVDGIQSLYG 264
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP13_HORSE (Collagenase 3 OS=Equus caballus GN=MMP13 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.445e-18 Identity = 56/116 (48.28%), Postives = 64/116 (55.17%), Query Frame = 3 Query: 3 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 338 TADI I F T +HGD PFDGP G LAHAF P PN G H D DE W +L VA HE GH LGL HS A+M+P + +G L +DD+QGIQ LYG Sbjct: 161 TADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFVLPDDDVQGIQYLYG 268
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP8_RAT (Neutrophil collagenase OS=Rattus norvegicus GN=Mmp8 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.888e-18 Identity = 56/130 (43.08%), Postives = 65/130 (50.00%), Query Frame = 3 Query: 6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKV-ELANDDIQGIQALYGNNPN---FNGSSAPT 374 ADI I F + DHGD PFDGP G LAHAF P G H D +E W +L VA HE GH LGL HS+ A+MYP+ + L DDI GIQ +YG + N G S PT Sbjct: 157 ADINIAFVSRDHGDNSPFDGPNGILAHAFQPGRGIGGDAHFDSEETWT--------QDSKNYNLFLVAAHEFGHSLGLSHSTDPGALMYPNYAYREPSTYSLPQDDINGIQTIYGPSDNPVQPTGPSTPT 278
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP8_MOUSE (Neutrophil collagenase OS=Mus musculus GN=Mmp8 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.205e-18 Identity = 52/119 (43.70%), Postives = 61/119 (51.26%), Query Frame = 3 Query: 6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKV-ELANDDIQGIQALYGNNPN 350 ADI I F + DHGD PFDGP G LAHAF P G H D +E W +L VA HE GH LGL HS+ A+MYP+ + L DDI GIQ +YG + N Sbjct: 156 ADINIAFVSRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDSEETWT--------QDSKNYNLFLVAAHEFGHSLGLSHSTDPGALMYPNYAYREPSTYSLPQDDINGIQTIYGPSDN 266
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP7_MOUSE (Matrilysin OS=Mus musculus GN=Mmp7 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 5.492e-18 Identity = 54/116 (46.55%), Postives = 58/116 (50.00%), Query Frame = 3 Query: 3 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSG-SRKVELANDDIQGIQALYG 338 TADI IGF DHGD PFDGP TL HAF+P G H D DE W + A HE GH LGL HSSV +MYP+ S L DDI GIQ LYG Sbjct: 151 TADIIIGFARRDHGDSFPFDGPGNTLGHAFAPGPGLGGDAHFDKDEYWT-------DGEDAGVNFLFAATHEFGHSLGLSHSSVPGTVMYPTYQRDYSEDFSLTKDDIAGIQKLYG 259
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP3_HUMAN (Stromelysin-1 OS=Homo sapiens GN=MMP3 PE=1 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 5.492e-18 Identity = 54/120 (45.00%), Postives = 65/120 (54.17%), Query Frame = 3 Query: 6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISS--GSRKVELANDDIQGIQALYGNNPN 350 ADI I F +HGD PFDGP LAHA++P NG H D DE W +L VA HEIGH LGL HS+ +A+MYP S + L+ DDI GIQ+LYG P+ Sbjct: 157 ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT--------KDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPD 268
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP3_CANFA (Stromelysin-1 OS=Canis familiaris GN=MMP3 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 5.492e-18 Identity = 53/131 (40.46%), Postives = 69/131 (52.67%), Query Frame = 3 Query: 6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRF---HLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYP--SISSGSRKVELANDDIQGIQALYGNNP--NFNGSSAPTD 377 ADI+I F DHGD PFDGP L HA+ P G + H D DE W +L VA HE+GH LGL HS+ A+MYP ++ + + L+ DD+ GIQ+LYG P + N PT+ Sbjct: 157 ADIKISFAVRDHGDFNPFDGPGNVLGHAYPPGPGIYGDAHFDDDEQWT--------SDTSGTNLFLVAAHELGHSLGLFHSADPSALMYPVYNVLADLARFHLSQDDVNGIQSLYGGPPSDSSNDPVVPTE 279
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP3_HORSE (Stromelysin-1 OS=Equus caballus GN=MMP3 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.224e-17 Identity = 52/119 (43.70%), Postives = 66/119 (55.46%), Query Frame = 3 Query: 6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISS--GSRKVELANDDIQGIQALYGNNP 347 ADI I F +HGD PFDGP LAHA+ P NG H D DE+W + VA HE+GH LGL HS+ +A+MYP ++ G +V L+ DD+ GIQ+LYG P Sbjct: 157 ADIMITFAVREHGDFFPFDGPGKVLAHAYPPGPGMNGDAHFDDDEHWT--------KDASGINFLLVAAHELGHSLGLYHSTNTEALMYPLYNTLKGPARVRLSQDDVTGIQSLYGPPP 267 The following BLAST results are available for this feature:
BLAST of FC873519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 80
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873519 ID=FC873519; Name=FC873519; organism=Citrus clementina; type=EST; length=614bpback to top |