FC873519

Overview
NameFC873519
Unique NameFC873519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length614
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6848 contig Ccv1_Contig6848:1189..1802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP13_MOUSE (Collagenase 3 OS=Mus musculus GN=Mmp13 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.473e-19
Identity = 56/116 (48.28%), Postives = 65/116 (56.03%), Query Frame = 3
Query:    3 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 338
            TADI I F T +HGD  PFDGP G LAHAF P PN  G  H D DE W               +L  VA HE+GH LGL HS    A+M+P  + +G     L +DD+QGIQ LYG
Sbjct:  161 TADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSSKGYNLFIVAAHELGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQFLYG 268          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP10_RAT (Stromelysin-2 OS=Rattus norvegicus GN=Mmp10 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.107e-18
Identity = 52/127 (40.94%), Postives = 71/127 (55.91%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRF---HLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYP--SISSGSRKVELANDDIQGIQALYGNNPNFNGSSAP 371
            ADI I F  G+HGD  PFDG   +LAHA+ P  G +   H D DE W               +L  VA HE+GH LGL HS+ ++++MYP    S+    + L+ DDI+GIQ+LYG  P+ + +  P
Sbjct:  157 ADIMISFAVGEHGDFYPFDGVGQSLAHAYPPGPGFYGDAHFDDDEKW--------SLGPSGTNLFLVAAHELGHSLGLFHSNNKESLMYPVYRFSTSQANIRLSQDDIEGIQSLYGARPSSDATVVP 275          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP3_MOUSE (Stromelysin-1 OS=Mus musculus GN=Mmp3 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.445e-18
Identity = 52/116 (44.83%), Postives = 65/116 (56.03%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS--RKVELANDDIQGIQALYG 338
            ADI I F  G+HGD  PFDGP   LAHA++P    NG  H D DE W               +L  VA HE+GH LGL HS+  +A+MYP   S +   +  L+ DD+ GIQ+LYG
Sbjct:  157 ADIMISFAVGEHGDFVPFDGPGTVLAHAYAPGPGINGDAHFDDDERWT--------EDVTGTNLFLVAAHELGHSLGLYHSAKAEALMYPVYKSSTDLSRFHLSQDDVDGIQSLYG 264          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP13_HORSE (Collagenase 3 OS=Equus caballus GN=MMP13 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.445e-18
Identity = 56/116 (48.28%), Postives = 64/116 (55.17%), Query Frame = 3
Query:    3 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 338
            TADI I F T +HGD  PFDGP G LAHAF P PN  G  H D DE W               +L  VA HE GH LGL HS    A+M+P  + +G     L +DD+QGIQ LYG
Sbjct:  161 TADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFVLPDDDVQGIQYLYG 268          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP8_RAT (Neutrophil collagenase OS=Rattus norvegicus GN=Mmp8 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.888e-18
Identity = 56/130 (43.08%), Postives = 65/130 (50.00%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKV-ELANDDIQGIQALYGNNPN---FNGSSAPT 374
            ADI I F + DHGD  PFDGP G LAHAF P     G  H D +E W               +L  VA HE GH LGL HS+   A+MYP+ +        L  DDI GIQ +YG + N     G S PT
Sbjct:  157 ADINIAFVSRDHGDNSPFDGPNGILAHAFQPGRGIGGDAHFDSEETWT--------QDSKNYNLFLVAAHEFGHSLGLSHSTDPGALMYPNYAYREPSTYSLPQDDINGIQTIYGPSDNPVQPTGPSTPT 278          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP8_MOUSE (Neutrophil collagenase OS=Mus musculus GN=Mmp8 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.205e-18
Identity = 52/119 (43.70%), Postives = 61/119 (51.26%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKV-ELANDDIQGIQALYGNNPN 350
            ADI I F + DHGD  PFDGP G LAHAF P     G  H D +E W               +L  VA HE GH LGL HS+   A+MYP+ +        L  DDI GIQ +YG + N
Sbjct:  156 ADINIAFVSRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDSEETWT--------QDSKNYNLFLVAAHEFGHSLGLSHSTDPGALMYPNYAYREPSTYSLPQDDINGIQTIYGPSDN 266          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP7_MOUSE (Matrilysin OS=Mus musculus GN=Mmp7 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.492e-18
Identity = 54/116 (46.55%), Postives = 58/116 (50.00%), Query Frame = 3
Query:    3 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSG-SRKVELANDDIQGIQALYG 338
            TADI IGF   DHGD  PFDGP  TL HAF+P     G  H D DE W               +    A HE GH LGL HSSV   +MYP+     S    L  DDI GIQ LYG
Sbjct:  151 TADIIIGFARRDHGDSFPFDGPGNTLGHAFAPGPGLGGDAHFDKDEYWT-------DGEDAGVNFLFAATHEFGHSLGLSHSSVPGTVMYPTYQRDYSEDFSLTKDDIAGIQKLYG 259          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP3_HUMAN (Stromelysin-1 OS=Homo sapiens GN=MMP3 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.492e-18
Identity = 54/120 (45.00%), Postives = 65/120 (54.17%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISS--GSRKVELANDDIQGIQALYGNNPN 350
            ADI I F   +HGD  PFDGP   LAHA++P    NG  H D DE W               +L  VA HEIGH LGL HS+  +A+MYP   S     +  L+ DDI GIQ+LYG  P+
Sbjct:  157 ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT--------KDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPD 268          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP3_CANFA (Stromelysin-1 OS=Canis familiaris GN=MMP3 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.492e-18
Identity = 53/131 (40.46%), Postives = 69/131 (52.67%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRF---HLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYP--SISSGSRKVELANDDIQGIQALYGNNP--NFNGSSAPTD 377
            ADI+I F   DHGD  PFDGP   L HA+ P  G +   H D DE W               +L  VA HE+GH LGL HS+   A+MYP  ++ +   +  L+ DD+ GIQ+LYG  P  + N    PT+
Sbjct:  157 ADIKISFAVRDHGDFNPFDGPGNVLGHAYPPGPGIYGDAHFDDDEQWT--------SDTSGTNLFLVAAHELGHSLGLFHSADPSALMYPVYNVLADLARFHLSQDDVNGIQSLYGGPPSDSSNDPVVPTE 279          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP3_HORSE (Stromelysin-1 OS=Equus caballus GN=MMP3 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.224e-17
Identity = 52/119 (43.70%), Postives = 66/119 (55.46%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISS--GSRKVELANDDIQGIQALYGNNP 347
            ADI I F   +HGD  PFDGP   LAHA+ P    NG  H D DE+W               +   VA HE+GH LGL HS+  +A+MYP  ++  G  +V L+ DD+ GIQ+LYG  P
Sbjct:  157 ADIMITFAVREHGDFFPFDGPGKVLAHAYPPGPGMNGDAHFDDDEHWT--------KDASGINFLLVAAHELGHSLGLYHSTNTEALMYPLYNTLKGPARVRLSQDDVTGIQSLYGPPP 267          
The following BLAST results are available for this feature:
BLAST of FC873519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
MMP13_MOUSE8.473e-1948.28Collagenase 3 OS=Mus musculus GN=Mmp13 PE=1 SV=1[more]
MMP10_RAT1.107e-1840.94Stromelysin-2 OS=Rattus norvegicus GN=Mmp10 PE=2 S... [more]
MMP3_MOUSE1.445e-1844.83Stromelysin-1 OS=Mus musculus GN=Mmp3 PE=2 SV=2[more]
MMP13_HORSE1.445e-1848.28Collagenase 3 OS=Equus caballus GN=MMP13 PE=2 SV=1[more]
MMP8_RAT1.888e-1843.08Neutrophil collagenase OS=Rattus norvegicus GN=Mmp... [more]
MMP8_MOUSE4.205e-1843.70Neutrophil collagenase OS=Mus musculus GN=Mmp8 PE=... [more]
MMP7_MOUSE5.492e-1846.55Matrilysin OS=Mus musculus GN=Mmp7 PE=2 SV=1[more]
MMP3_HUMAN5.492e-1845.00Stromelysin-1 OS=Homo sapiens GN=MMP3 PE=1 SV=2[more]
MMP3_CANFA5.492e-1840.46Stromelysin-1 OS=Canis familiaris GN=MMP3 PE=2 SV=... [more]
MMP3_HORSE1.224e-1743.70Stromelysin-1 OS=Equus caballus GN=MMP3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CG10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873519 ID=FC873519; Name=FC873519; organism=Citrus clementina; type=EST; length=614bp
CGACCGCCGATATCAGGATCGGGTTCTTTACTGGCGATCACGGTGACGGC
GAGCCGTTTGATGGGCCTATGGGCACGCTGGCGCACGCCTTCTCGCCACC
AAATGGACGGTTCCATTTAGACGGCGACGAGAACTGGGTAATCACGAGTG
GTACTACAACGTCGATATCGATGTCGGCGATTGATCTTGAGTCAGTTGCT
GTTCATGAGATTGGCCACTTGTTAGGGTTGGGGCATTCATCTGTTGAAGA
TGCGATAATGTACCCTTCAATTTCTTCTGGATCCAGGAAAGTTGAATTGG
CCAACGATGATATACAGGGGATCCAGGCCCTGTACGGTAATAATCCAAAT
TTCAACGGCTCATCTGCGCCGACCGATCAACAGAGGGACACCAGCGATGC
CCATGGGGCTTATTTTTTGGGCTCTTGTTTGGGCCTGAGTTTCTTCGTGG
TGGCCGCTGTTTTGGGCCTGTAGATTTTTTAAATTAATTTATTATTTTTT
TTAGGGATATATTATTGCCTGAGATATTTGTTTCTGCTTCCATTCCATTT
GCTTGTGGAAGCAATTATAATATATCCGGCAACAAGCTTTGGTTTCAAAA
AAAAAAAAAAAAAA
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