FC873519

Overview
NameFC873519
Unique NameFC873519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length614
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6848 contig Ccv1_Contig6848:1189..1802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP13_HUMAN (Collagenase 3 OS=Homo sapiens GN=MMP13 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.224e-17
Identity = 54/115 (46.96%), Postives = 63/115 (54.78%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 338
            ADI I F   +HGD  PFDGP G LAHAF P PN  G  H D DE W               +L  VA HE GH LGL HS    A+M+P  + +G     L +DD+QGIQ+LYG
Sbjct:  161 ADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 267          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP7_FELCA (Matrilysin (Fragment) OS=Felis catus GN=MMP7 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.087e-17
Identity = 52/114 (45.61%), Postives = 63/114 (55.26%), Query Frame = 3
Query:    9 DIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISS-GSRKVELANDDIQGIQALYG 338
            DI IGF  G HGD  PFDGP GTLAHA+ P     G  H D DE W               +  +VA HE+GH LGL HSS  D++MYP+  +  S   +L+  DI+ IQ LYG
Sbjct:  148 DIVIGFARGAHGDFYPFDGPGGTLAHAYEPGPGLGGDAHFDEDERWA-------DGRGLGINFLAVATHELGHSLGLRHSSDPDSVMYPTYGARDSENFKLSPGDIREIQELYG 254          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP3_RAT (Stromelysin-1 OS=Rattus norvegicus GN=Mmp3 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.087e-17
Identity = 51/116 (43.97%), Postives = 64/116 (55.17%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS--RKVELANDDIQGIQALYG 338
            ADI I F   +HGD  PFDGP   LAHA++P    NG  H D DE W               +L  VA HE+GH LGL HS+  +A+MYP   S +   +  L+ DD+ GIQ+LYG
Sbjct:  155 ADIMISFAVEEHGDFIPFDGPGMVLAHAYAPGPGTNGDAHFDDDERWT--------DDVTGTNLFLVAAHELGHSLGLFHSANAEALMYPVYKSSTDLARFHLSQDDVDGIQSLYG 262          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP28_HUMAN (Matrix metalloproteinase-28 OS=Homo sapiens GN=MMP28 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.087e-17
Identity = 51/113 (45.13%), Postives = 58/113 (51.33%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDG--EPFDGPMGTLAHAFSPPNGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYG 338
            ADIR+ FF GDH DG    FDGP G LAHAF P  G  H D DE W               +L  V  HEIGH LGL HS    A+M P      R   L+ DD+  +Q+LYG
Sbjct:  179 ADIRLTFFQGDHNDGLGNAFDGPGGALAHAFLPRRGEAHFDQDERW-------SLSRRRGRNLFVVLAHEIGHTLGLTHSPAPRALMAPYYKRLGRDALLSWDDVLAVQSLYG 284          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP3_RABIT (Stromelysin-1 OS=Oryctolagus cuniculus GN=MMP3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.726e-17
Identity = 51/119 (42.86%), Postives = 66/119 (55.46%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS--RKVELANDDIQGIQALYGNNP 347
            ADI I F   +HGD  PFDGP   LAHA++P    NG  H D DE W               +L  VA HE+GH LGL HS+  +A+MYP  ++ +   +  L+ DD+ GIQ+LYG  P
Sbjct:  158 ADIMISFGVREHGDFIPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT--------KDTTGTNLFLVAAHELGHSLGLFHSANPEALMYPVYNAFTDLARFRLSQDDVDGIQSLYGPAP 268          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP27_HUMAN (Matrix metalloproteinase-27 OS=Homo sapiens GN=MMP27 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.036e-16
Identity = 53/119 (44.54%), Postives = 64/119 (53.78%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGD-GEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPS-ISSGSRKVELANDDIQGIQALYGNNP 347
            ADI I F T  HG     FDGP+G L HAF P     G  H D DENW               +L  VA HE GH LGL HS+ + A+M+P+ +S   RK  L+ DDI GIQ++YG  P
Sbjct:  154 ADIMIAFRTRVHGRCPRYFDGPLGVLGHAFPPGPGLGGDTHFDEDENWTKDGAGF--------NLFLVAAHEFGHALGLSHSNDQTALMFPNYVSLDPRKYPLSQDDINGIQSIYGGLP 264          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP1A_MOUSE (Interstitial collagenase A OS=Mus musculus GN=Mmp1a PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.036e-16
Identity = 51/117 (43.59%), Postives = 59/117 (50.43%), Query Frame = 3
Query:    9 DIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPN 350
            DI + F  GDHGD  PFDGP   LAH F P     G  H D DE W               +L  V  HE+GH LGL HSS   A+M+PS +  +    L  DDI  IQ LYG +PN
Sbjct:  155 DIVLSFHRGDHGDNNPFDGPNYKLAHTFQPGPGLGGDVHYDLDETWTNSSENF--------NLFYVTAHELGHSLGLTHSSDIGALMFPSYTWYTEDFVLNQDDINRIQDLYGPSPN 263          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP24_HUMAN (Matrix metalloproteinase-24 OS=Homo sapiens GN=MMP24 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.767e-16
Identity = 53/115 (46.09%), Postives = 60/115 (52.17%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 338
            ADI I F +G HGD  PFDG  G LAHA+ P     G  H D DE W               DL  VAVHE+GH LGL HSS   AIM P      +   +L  DD+QGIQ +YG
Sbjct:  218 ADIMIFFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWT-----LGNANHDGNDLFLVAVHELGHALGLEHSSDPSAIMAPFYQYMETHNFKLPQDDLQGIQKIYG 327          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP26_HUMAN (Matrix metalloproteinase-26 OS=Homo sapiens GN=MMP26 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.014e-16
Identity = 51/115 (44.35%), Postives = 63/115 (54.78%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGR---FHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSI-SSGSRKVELANDDIQGIQALYG 338
            ADI++ F+   H DG PFDGP G L HAF P +G     H D +E+W               +L  VA HEIGH LGL HS  + +IMYP+      R  +L+ DDIQ IQ LYG
Sbjct:  147 ADIKVSFWQWAHEDGWPFDGPGGILGHAFLPNSGNPGVVHFDKNEHW--------SASDTGYNLFLVATHEIGHSLGLQHSGNQSSIMYPTYWYHDPRTFQLSADDIQRIQHLYG 253          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP1B_MOUSE (Interstitial collagenase B OS=Mus musculus GN=Mmp1b PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.014e-16
Identity = 49/117 (41.88%), Postives = 61/117 (52.14%), Query Frame = 3
Query:    9 DIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPN 350
            DI + F  GDHGD   FDG     AHAF P     G  H D D+ W               +L  V  HE+GH LGL HS+ E+A+M+PS +  ++   L  DDI  IQALYG +PN
Sbjct:  155 DIVLSFHRGDHGDLYTFDGSKYHFAHAFLPGLGLGGNVHYDLDQKWTDNNEDF--------NLFYVTAHELGHSLGLSHSNDEEALMFPSYTWSNKDFVLNQDDINRIQALYGPSPN 263          
The following BLAST results are available for this feature:
BLAST of FC873519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
MMP13_HUMAN1.224e-1746.96Collagenase 3 OS=Homo sapiens GN=MMP13 PE=1 SV=1[more]
MMP7_FELCA2.087e-1745.61Matrilysin (Fragment) OS=Felis catus GN=MMP7 PE=2 ... [more]
MMP3_RAT2.087e-1743.97Stromelysin-1 OS=Rattus norvegicus GN=Mmp3 PE=1 SV... [more]
MMP28_HUMAN2.087e-1745.13Matrix metalloproteinase-28 OS=Homo sapiens GN=MMP... [more]
MMP3_RABIT2.726e-1742.86Stromelysin-1 OS=Oryctolagus cuniculus GN=MMP3 PE=... [more]
MMP27_HUMAN1.036e-1644.54Matrix metalloproteinase-27 OS=Homo sapiens GN=MMP... [more]
MMP1A_MOUSE1.036e-1643.59Interstitial collagenase A OS=Mus musculus GN=Mmp1... [more]
MMP24_HUMAN1.767e-1646.09Matrix metalloproteinase-24 OS=Homo sapiens GN=MMP... [more]
MMP26_HUMAN3.014e-1644.35Matrix metalloproteinase-26 OS=Homo sapiens GN=MMP... [more]
MMP1B_MOUSE3.014e-1641.88Interstitial collagenase B OS=Mus musculus GN=Mmp1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CG10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873519 ID=FC873519; Name=FC873519; organism=Citrus clementina; type=EST; length=614bp
CGACCGCCGATATCAGGATCGGGTTCTTTACTGGCGATCACGGTGACGGC
GAGCCGTTTGATGGGCCTATGGGCACGCTGGCGCACGCCTTCTCGCCACC
AAATGGACGGTTCCATTTAGACGGCGACGAGAACTGGGTAATCACGAGTG
GTACTACAACGTCGATATCGATGTCGGCGATTGATCTTGAGTCAGTTGCT
GTTCATGAGATTGGCCACTTGTTAGGGTTGGGGCATTCATCTGTTGAAGA
TGCGATAATGTACCCTTCAATTTCTTCTGGATCCAGGAAAGTTGAATTGG
CCAACGATGATATACAGGGGATCCAGGCCCTGTACGGTAATAATCCAAAT
TTCAACGGCTCATCTGCGCCGACCGATCAACAGAGGGACACCAGCGATGC
CCATGGGGCTTATTTTTTGGGCTCTTGTTTGGGCCTGAGTTTCTTCGTGG
TGGCCGCTGTTTTGGGCCTGTAGATTTTTTAAATTAATTTATTATTTTTT
TTAGGGATATATTATTGCCTGAGATATTTGTTTCTGCTTCCATTCCATTT
GCTTGTGGAAGCAATTATAATATATCCGGCAACAAGCTTTGGTTTCAAAA
AAAAAAAAAAAAAA
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