FC873519
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP13_HUMAN (Collagenase 3 OS=Homo sapiens GN=MMP13 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.224e-17 Identity = 54/115 (46.96%), Postives = 63/115 (54.78%), Query Frame = 3 Query: 6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 338 ADI I F +HGD PFDGP G LAHAF P PN G H D DE W +L VA HE GH LGL HS A+M+P + +G L +DD+QGIQ+LYG Sbjct: 161 ADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 267
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP7_FELCA (Matrilysin (Fragment) OS=Felis catus GN=MMP7 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.087e-17 Identity = 52/114 (45.61%), Postives = 63/114 (55.26%), Query Frame = 3 Query: 9 DIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISS-GSRKVELANDDIQGIQALYG 338 DI IGF G HGD PFDGP GTLAHA+ P G H D DE W + +VA HE+GH LGL HSS D++MYP+ + S +L+ DI+ IQ LYG Sbjct: 148 DIVIGFARGAHGDFYPFDGPGGTLAHAYEPGPGLGGDAHFDEDERWA-------DGRGLGINFLAVATHELGHSLGLRHSSDPDSVMYPTYGARDSENFKLSPGDIREIQELYG 254
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP3_RAT (Stromelysin-1 OS=Rattus norvegicus GN=Mmp3 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.087e-17 Identity = 51/116 (43.97%), Postives = 64/116 (55.17%), Query Frame = 3 Query: 6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP---PNGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS--RKVELANDDIQGIQALYG 338 ADI I F +HGD PFDGP LAHA++P NG H D DE W +L VA HE+GH LGL HS+ +A+MYP S + + L+ DD+ GIQ+LYG Sbjct: 155 ADIMISFAVEEHGDFIPFDGPGMVLAHAYAPGPGTNGDAHFDDDERWT--------DDVTGTNLFLVAAHELGHSLGLFHSANAEALMYPVYKSSTDLARFHLSQDDVDGIQSLYG 262
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP28_HUMAN (Matrix metalloproteinase-28 OS=Homo sapiens GN=MMP28 PE=2 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 2.087e-17 Identity = 51/113 (45.13%), Postives = 58/113 (51.33%), Query Frame = 3 Query: 6 ADIRIGFFTGDHGDG--EPFDGPMGTLAHAFSPPNGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYG 338 ADIR+ FF GDH DG FDGP G LAHAF P G H D DE W +L V HEIGH LGL HS A+M P R L+ DD+ +Q+LYG Sbjct: 179 ADIRLTFFQGDHNDGLGNAFDGPGGALAHAFLPRRGEAHFDQDERW-------SLSRRRGRNLFVVLAHEIGHTLGLTHSPAPRALMAPYYKRLGRDALLSWDDVLAVQSLYG 284
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP3_RABIT (Stromelysin-1 OS=Oryctolagus cuniculus GN=MMP3 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.726e-17 Identity = 51/119 (42.86%), Postives = 66/119 (55.46%), Query Frame = 3 Query: 6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS--RKVELANDDIQGIQALYGNNP 347 ADI I F +HGD PFDGP LAHA++P NG H D DE W +L VA HE+GH LGL HS+ +A+MYP ++ + + L+ DD+ GIQ+LYG P Sbjct: 158 ADIMISFGVREHGDFIPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT--------KDTTGTNLFLVAAHELGHSLGLFHSANPEALMYPVYNAFTDLARFRLSQDDVDGIQSLYGPAP 268
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP27_HUMAN (Matrix metalloproteinase-27 OS=Homo sapiens GN=MMP27 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.036e-16 Identity = 53/119 (44.54%), Postives = 64/119 (53.78%), Query Frame = 3 Query: 6 ADIRIGFFTGDHGD-GEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPS-ISSGSRKVELANDDIQGIQALYGNNP 347 ADI I F T HG FDGP+G L HAF P G H D DENW +L VA HE GH LGL HS+ + A+M+P+ +S RK L+ DDI GIQ++YG P Sbjct: 154 ADIMIAFRTRVHGRCPRYFDGPLGVLGHAFPPGPGLGGDTHFDEDENWTKDGAGF--------NLFLVAAHEFGHALGLSHSNDQTALMFPNYVSLDPRKYPLSQDDINGIQSIYGGLP 264
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP1A_MOUSE (Interstitial collagenase A OS=Mus musculus GN=Mmp1a PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.036e-16 Identity = 51/117 (43.59%), Postives = 59/117 (50.43%), Query Frame = 3 Query: 9 DIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPN 350 DI + F GDHGD PFDGP LAH F P G H D DE W +L V HE+GH LGL HSS A+M+PS + + L DDI IQ LYG +PN Sbjct: 155 DIVLSFHRGDHGDNNPFDGPNYKLAHTFQPGPGLGGDVHYDLDETWTNSSENF--------NLFYVTAHELGHSLGLTHSSDIGALMFPSYTWYTEDFVLNQDDINRIQDLYGPSPN 263
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP24_HUMAN (Matrix metalloproteinase-24 OS=Homo sapiens GN=MMP24 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.767e-16 Identity = 53/115 (46.09%), Postives = 60/115 (52.17%), Query Frame = 3 Query: 6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 338 ADI I F +G HGD PFDG G LAHA+ P G H D DE W DL VAVHE+GH LGL HSS AIM P + +L DD+QGIQ +YG Sbjct: 218 ADIMIFFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWT-----LGNANHDGNDLFLVAVHELGHALGLEHSSDPSAIMAPFYQYMETHNFKLPQDDLQGIQKIYG 327
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP26_HUMAN (Matrix metalloproteinase-26 OS=Homo sapiens GN=MMP26 PE=2 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 3.014e-16 Identity = 51/115 (44.35%), Postives = 63/115 (54.78%), Query Frame = 3 Query: 6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGR---FHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSI-SSGSRKVELANDDIQGIQALYG 338 ADI++ F+ H DG PFDGP G L HAF P +G H D +E+W +L VA HEIGH LGL HS + +IMYP+ R +L+ DDIQ IQ LYG Sbjct: 147 ADIKVSFWQWAHEDGWPFDGPGGILGHAFLPNSGNPGVVHFDKNEHW--------SASDTGYNLFLVATHEIGHSLGLQHSGNQSSIMYPTYWYHDPRTFQLSADDIQRIQHLYG 253
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP1B_MOUSE (Interstitial collagenase B OS=Mus musculus GN=Mmp1b PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.014e-16 Identity = 49/117 (41.88%), Postives = 61/117 (52.14%), Query Frame = 3 Query: 9 DIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPN 350 DI + F GDHGD FDG AHAF P G H D D+ W +L V HE+GH LGL HS+ E+A+M+PS + ++ L DDI IQALYG +PN Sbjct: 155 DIVLSFHRGDHGDLYTFDGSKYHFAHAFLPGLGLGGNVHYDLDQKWTDNNEDF--------NLFYVTAHELGHSLGLSHSNDEEALMFPSYTWSNKDFVLNQDDINRIQALYGPSPN 263 The following BLAST results are available for this feature:
BLAST of FC873519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 80
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873519 ID=FC873519; Name=FC873519; organism=Citrus clementina; type=EST; length=614bpback to top |