FC873519

Overview
NameFC873519
Unique NameFC873519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length614
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP25_HUMAN (Matrix metalloproteinase-25 OS=Homo sapiens GN=MMP25 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.953e-15
Identity = 52/120 (43.33%), Postives = 59/120 (49.17%), Query Frame = 3
Query:    9 DIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP----NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS---SGSRKVELANDDIQGIQALYGNNP 347
            DI I F    H D  PFDG  GTLAHAF P     +G  H D +E W               DL +VAVHE GH LGLGHSS  ++IM P          K  L+ DD  G+Q LYG  P
Sbjct:  169 DILIDFARAFHQDSYPFDGLGGTLAHAFFPGEHPISGDTHFDDEETWTFGSKDGEGT-----DLFAVAVHEFGHALGLGHSSAPNSIMRPFYQGPVGDPDKYRLSQDDRDGLQQLYGKAP 283          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP15_MOUSE (Matrix metalloproteinase-15 OS=Mus musculus GN=Mmp15 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.953e-15
Identity = 54/127 (42.52%), Postives = 64/127 (50.39%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGNNPNFNGSSAPT 374
            ADI + F +G HGD  PFDG  G LAHA+ P     G  H D DE W                L  VAVHE+GH LGL HSS   AIM P      +   +L  DD++GIQ LYG+    +G   PT
Sbjct:  191 ADIMVLFASGFHGDSSPFDGVGGFLAHAYFPGPGLGGDTHFDADEPWT-----FSSTDLHGISLFLVAVHELGHALGLEHSSNPSAIMAPFYQWMDTDNFQLPEDDLRGIQQLYGSP---DGKPQPT 309          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP14_PIG (Matrix metalloproteinase-14 OS=Sus scrofa GN=MMP14 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.953e-15
Identity = 58/134 (43.28%), Postives = 66/134 (49.25%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGNNPNFNGSSAPTDQQRDTS 395
            ADI I F  G HGD  PFDG  G LAHA+ P PN  G  H D  E W               D+  VAVHE+GH LGL HS+   AIM P      +    L +DD +GIQ LYG+   F     P  Q R TS
Sbjct:  173 ADIMIFFAEGFHGDSTPFDGEGGFLAHAYFPGPNIGGDTHFDSAEPWT-----VRNEDLNGNDIFLVAVHELGHALGLEHSNDPSAIMAPFYQWMDTENFVLPDDDRRGIQQLYGSESGFPTKMPP--QPRTTS 299          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP11_MOUSE (Stromelysin-3 OS=Mus musculus GN=Mmp11 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.953e-15
Identity = 55/136 (40.44%), Postives = 66/136 (48.53%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPNFNGSSAPTDQQRDTSDAH 404
            ADI I F    HGD  PFDGP G LAHAF P     G  H D DE W               DL  VA HE GH+LGL H++   A+M P   +    + L+ DD +GIQ LYG       S APT   +  +D +
Sbjct:  157 ADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWT-------IGDNQGTDLLQVAAHEFGHVLGLQHTTAAKALMSP-FYTFRYPLSLSPDDRRGIQHLYGRPQMAPTSPAPTLSSQAGTDTN 284          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP15_HUMAN (Matrix metalloproteinase-15 OS=Homo sapiens GN=MMP15 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.551e-15
Identity = 54/127 (42.52%), Postives = 64/127 (50.39%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGNNPNFNGSSAPT 374
            ADI + F +G HGD  PFDG  G LAHA+ P     G  H D DE W               +L  VAVHE+GH LGL HSS  +AIM P          +L  DD++GIQ LYG     +G   PT
Sbjct:  195 ADIMVLFASGFHGDSSPFDGTGGFLAHAYFPGPGLGGDTHFDADEPWT-----FSSTDLHGNNLFLVAVHELGHALGLEHSSNPNAIMAPFYQWKDVDNFKLPEDDLRGIQQLYGTP---DGQPQPT 313          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP12_RAT (Macrophage metalloelastase OS=Rattus norvegicus GN=Mmp12 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 55/129 (42.64%), Postives = 64/129 (49.61%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG---NNPNFNGSSAP 371
            ADI I F  GDHGD   FDG  GTLAHAF P     G  H D  E W               +L  VAVHE+GH LGL HS+   +IMYP+          L+ DDI  IQ+LYG    NP+     +P
Sbjct:  153 ADITILFAFGDHGDFYDFDGKGGTLAHAFYPGPGIQGDAHFDEAETWT--------KSFQGTNLFLVAVHELGHSLGLRHSNNPKSIMYPTYRYLHPNTFRLSADDIHSIQSLYGAPVKNPSLTNPGSP 273          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP13_XENLA (Collagenase 3 (Fragment) OS=Xenopus laevis GN=mmp13 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.683e-15
Identity = 49/116 (42.24%), Postives = 62/116 (53.45%), Query Frame = 3
Query:    3 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 338
            TADI + F   +HGD  PFDGP G LAHAF P     G  H D DE +               +L  VA HE GH LGL HS    ++M+P  + + + +  L +DD+QGIQ LYG
Sbjct:  158 TADIMVSFGKKEHGDYYPFDGPDGLLAHAFPPGEKLGGDTHFDDDEMF--------STDNKGYNLFVVAAHEFGHALGLDHSRDPGSLMFPVYTYTETSRFVLPDDDVQGIQVLYG 265          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP25_MOUSE (Matrix metalloproteinase-25 OS=Mus musculus GN=Mmp25 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.423e-15
Identity = 54/131 (41.22%), Postives = 61/131 (46.56%), Query Frame = 3
Query:    9 DIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP----NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS---SGSRKVELANDDIQGIQALYG---NNPNFNGSSAP 371
            DI I F    H D  PFDG  GTLAHAF P     +G  H D +E W               DL +VAVHE GH LGLGHSS  ++IM P             L  DD  G+Q LYG    NPN   +  P
Sbjct:  223 DIIIHFARAYHQDSYPFDGSGGTLAHAFFPGEHPISGDTHFDDEETWTFGSTDDNGI-----DLFAVAVHEFGHALGLGHSSAPNSIMRPFYQGPVGDPATYRLPQDDRDGLQQLYGRVSQNPNARPTRKP 348          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP12_RABIT (Macrophage metalloelastase OS=Oryctolagus cuniculus GN=MMP12 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.423e-15
Identity = 56/141 (39.72%), Postives = 68/141 (48.23%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGNNPNFNGSSAPTDQQRDTSDAHGAYF 416
            ADI I F +G HGD   FDG  G +AHAF P     G  H D DE W               +L  VAVHE+GH LGL HS+   AIM+P+          L+ DDI+GIQ+LYG  P  +      D    T+  H   F
Sbjct:  152 ADIMILFASGAHGDYGAFDGRGGVIAHAFGPGPGIGGDTHFDEDEIW--------SKSYKGTNLFLVAVHELGHALGLDHSNDPKAIMFPTYGYIDLNTFHLSADDIRGIQSLYG-GPEQHQPMPKPDNPEPTACDHNLKF 283          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP11_RAT (Stromelysin-3 OS=Rattus norvegicus GN=Mmp11 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.423e-15
Identity = 54/136 (39.71%), Postives = 65/136 (47.79%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPNFNGSSAPTDQQRDTSDAH 404
            ADI I F    HGD  PFDGP G LAHAF P     G  H D DE W               DL  VA HE GH+LGL H++   A+M P   +    + L+ DD +GIQ LYG       S  PT   +  +D +
Sbjct:  157 ADIMIDFTRYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWT--------IGDKGTDLLQVAAHEFGHVLGLQHTTAAKALMSP-FYTFRYPLSLSPDDRRGIQHLYGRPQLTPTSPTPTLSSQAGTDTN 283          
The following BLAST results are available for this feature:
BLAST of FC873519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
MMP25_HUMAN1.953e-1543.33Matrix metalloproteinase-25 OS=Homo sapiens GN=MMP... [more]
MMP15_MOUSE1.953e-1542.52Matrix metalloproteinase-15 OS=Mus musculus GN=Mmp... [more]
MMP14_PIG1.953e-1543.28Matrix metalloproteinase-14 OS=Sus scrofa GN=MMP14... [more]
MMP11_MOUSE1.953e-1540.44Stromelysin-3 OS=Mus musculus GN=Mmp11 PE=1 SV=2[more]
MMP15_HUMAN2.551e-1542.52Matrix metalloproteinase-15 OS=Homo sapiens GN=MMP... [more]
MMP12_RAT3.332e-1542.64Macrophage metalloelastase OS=Rattus norvegicus GN... [more]
MMP13_XENLA5.683e-1542.24Collagenase 3 (Fragment) OS=Xenopus laevis GN=mmp1... [more]
MMP25_MOUSE7.423e-1541.22Matrix metalloproteinase-25 OS=Mus musculus GN=Mmp... [more]
MMP12_RABIT7.423e-1539.72Macrophage metalloelastase OS=Oryctolagus cuniculu... [more]
MMP11_RAT7.423e-1539.71Stromelysin-3 OS=Rattus norvegicus GN=Mmp11 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CG10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873519 ID=FC873519; Name=FC873519; organism=Citrus clementina; type=EST; length=614bp
CGACCGCCGATATCAGGATCGGGTTCTTTACTGGCGATCACGGTGACGGC
GAGCCGTTTGATGGGCCTATGGGCACGCTGGCGCACGCCTTCTCGCCACC
AAATGGACGGTTCCATTTAGACGGCGACGAGAACTGGGTAATCACGAGTG
GTACTACAACGTCGATATCGATGTCGGCGATTGATCTTGAGTCAGTTGCT
GTTCATGAGATTGGCCACTTGTTAGGGTTGGGGCATTCATCTGTTGAAGA
TGCGATAATGTACCCTTCAATTTCTTCTGGATCCAGGAAAGTTGAATTGG
CCAACGATGATATACAGGGGATCCAGGCCCTGTACGGTAATAATCCAAAT
TTCAACGGCTCATCTGCGCCGACCGATCAACAGAGGGACACCAGCGATGC
CCATGGGGCTTATTTTTTGGGCTCTTGTTTGGGCCTGAGTTTCTTCGTGG
TGGCCGCTGTTTTGGGCCTGTAGATTTTTTAAATTAATTTATTATTTTTT
TTAGGGATATATTATTGCCTGAGATATTTGTTTCTGCTTCCATTCCATTT
GCTTGTGGAAGCAATTATAATATATCCGGCAACAAGCTTTGGTTTCAAAA
AAAAAAAAAAAAAA
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