FC873519

Overview
NameFC873519
Unique NameFC873519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length614
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6848 contig Ccv1_Contig6848:1189..1802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP23_HUMAN (Matrix metalloproteinase-23 OS=Homo sapiens GN=MMP23A PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 48/118 (40.68%), Postives = 61/118 (51.69%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGD------GEPFDGPMGTLAHAFSPPNGRFHLDGDENWV-XXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYG 338
            +D+RIGF+  +H D         FDGP G LAHAF PP+G  H D  E WV               DL  VA HEIGH LGL HS    A+M+ + +    K  L+ D++ G+  LYG
Sbjct:  138 SDLRIGFYPINHTDCLVSALHHCFDGPTGELAHAFFPPHGGIHFDDSEYWVLGPTRYSWKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALMHLNATLRGWKA-LSQDELWGLHRLYG 254          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP17_HUMAN (Matrix metalloproteinase-17 OS=Homo sapiens GN=MMP17 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 49/132 (37.12%), Postives = 64/132 (48.48%), Query Frame = 3
Query:    3 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPN----GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS---SGSRKVELANDDIQGIQALYGNNPNFNGSSAPTD 377
            TADI+I F   DH DG PFDGP GT+AHAF P +    G  H D DE W               DL +VAVHE GH +GL H +   +IM P          +  L  +D   +  LYG   + + ++ P +
Sbjct:  185 TADIQIDFSKADHNDGYPFDGPGGTVAHAFFPGHHHTAGDTHFDDDEAWT-----FRSSDAHGMDLFAVAVHEFGHAIGLSHVAAAHSIMRPYYQGPVGDPLRYGLPYEDKVRVWQLYGVRESVSPTAQPEE 311          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP12_MOUSE (Macrophage metalloelastase OS=Mus musculus GN=Mmp12 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 8.207e-14
Identity = 54/129 (41.86%), Postives = 64/129 (49.61%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG---NNPNFNGSSAP 371
            ADI I F  G HGD   FDG  GTLAHAF P     G  H D  E W               +L  VAVHE+GH LGL HS+   +IMYP+          L+ DDI+ IQ+LYG     P+    S+P
Sbjct:  161 ADIMILFAFGAHGDFNYFDGKGGTLAHAFYPGPGIQGDAHFDEAETWT--------KSFQGTNLFLVAVHELGHSLGLQHSNNPKSIMYPTYRYLNPSTFRLSADDIRNIQSLYGAPVKPPSLTKPSSP 281          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP11_HUMAN (Stromelysin-3 OS=Homo sapiens GN=MMP11 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.207e-14
Identity = 48/114 (42.11%), Postives = 58/114 (50.88%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYG 338
            ADI I F    HGD  PFDGP G LAHAF P     G  H D DE W               DL  VA HE GH+LGL H++   A+M  +  +    + L+ DD +G+Q LYG
Sbjct:  153 ADIMIDFARYWHGDDLPFDGPGGILAHAFFPKTHREGDVHFDYDETWT-------IGDDQGTDLLQVAAHEFGHVLGLQHTTAAKALM-SAFYTFRYPLSLSPDDCRGVQHLYG 258          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP17_MOUSE (Matrix metalloproteinase-17 OS=Mus musculus GN=Mmp17 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 42/91 (46.15%), Postives = 49/91 (53.85%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPN----GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYP 266
            ADI+I F   DH DG PFDGP GT+AHAF P +    G  H D DE W               DL +VAVHE GH +GL H +   +IM P
Sbjct:  182 ADIQIDFSKADHNDGYPFDGPGGTVAHAFFPGDHHTAGDTHFDDDEPWT-----FRSSDAHGMDLFAVAVHEFGHAIGLSHVAAPSSIMQP 267          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP19_MOUSE (Matrix metalloproteinase-19 OS=Mus musculus GN=Mmp19 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 50/134 (37.31%), Postives = 61/134 (45.52%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGD-----GEPFDGPMGTLAHAFSPPNGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPNFNGSSAPTDQQRDT 392
            ADIR+ F    HG         FDGP   LAHA  P  G  H D DE W               +L  +A HE+GH LGLGHS    A+M P  +      +L  DD+ GIQALYG       S    D++ +T
Sbjct:  153 ADIRLSF----HGRQSLYCSNTFDGPGKVLAHADIPELGSIHFDKDELWTEGTYQGV-------NLRIIAAHEVGHALGLGHSRYTQALMAPVYAGYQPFFKLHPDDVAGIQALYGKR-----SPETRDEEEET 270          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP19_HUMAN (Matrix metalloproteinase-19 OS=Homo sapiens GN=MMP19 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.948e-13
Identity = 47/116 (40.52%), Postives = 54/116 (46.55%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGD-----GEPFDGPMGTLAHAFSPPNGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYG 338
            ADIR+ F    HG         FDGP   LAHA  P  G  H D DE W               +L  +A HE+GH LGLGHS    A+M P         +L  DD+ GIQALYG
Sbjct:  152 ADIRLSF----HGRQSSYCSNTFDGPGRVLAHADIPELGSVHFDEDEFWTEGTYRGV-------NLRIIAAHEVGHALGLGHSRYSQALMAPVYEGYRPHFKLHPDDVAGIQALYG 256          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: 095L_IIV3 (Probable matrix metalloproteinase 095L OS=Invertebrate iridescent virus 3 GN=IIV3-095L PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.640e-12
Identity = 45/117 (38.46%), Postives = 54/117 (46.15%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNP 347
            A I + F  G HGDG  FDGP   LAHAF P     G  HLD  E W                +  V +HEIGH LGL HS    +IMY   +    K +L  +D+  +  LYG  P
Sbjct:  210 AQIVVRFENGSHGDGWDFDGPGNVLAHAFQPGQSLGGDIHLDAAEPWT----IYDIDGHDGNSILHVVLHEIGHALGLEHSRDPTSIMYAWYT--PFKYDLGPEDVSAVAGLYGAKP 320          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP_TNAVC (Putative matrix metalloproteinase OS=Trichoplusia ni ascovirus 2c GN=ORF158 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 42/122 (34.43%), Postives = 57/122 (46.72%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPN--------GRFHLDGDEN-WVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNN 344
            A +RI F+  DH D  PFDG    L HAF P          G  H+D DE  +               +L ++ +HE+GH +GL HS+ + +IMYP         +L  DD  GIQ +Y  N
Sbjct:  104 AMVRIYFYRQDHNDSFPFDGKGKILGHAFYPNRHRINRGLAGEVHIDADEQFYFNDKLENMSEYDDSINLHAILLHEVGHAIGLLHSANKSSIMYPYYGGS----KLGVDDFNGIQQIYFAN 221          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP_SFAVA (Putative matrix metalloproteinase OS=Spodoptera frugiperda ascovirus 1a GN=ORF14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 50/123 (40.65%), Postives = 60/123 (48.78%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRF----HLDGDENWVXXXXXXXXXXXXXXDLESVAV-HEIGHLLGLGHSSVEDAIMY-----PSISSGSRKVELANDDIQGIQALYGNN 344
            A IRI F    HGD + FDG  G LAHAF P  G      H+D DE +                     V HEIGH LGL HSS + AIMY      S ++G+  V L+ DD+ GI  LY +N
Sbjct:  116 AHIRISFKRRYHGDSD-FDGEGGLLAHAFLPNQGALSGDIHMDNDETFAFSFNDADYEGDNAPTSYFWTVLHEIGHTLGLQHSSSKQAIMYGFYVKRSFNNGA--VTLSTDDMNGINELYHSN 235          
The following BLAST results are available for this feature:
BLAST of FC873519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
MMP23_HUMAN3.684e-1440.68Matrix metalloproteinase-23 OS=Homo sapiens GN=MMP... [more]
MMP17_HUMAN3.684e-1437.12Matrix metalloproteinase-17 OS=Homo sapiens GN=MMP... [more]
MMP12_MOUSE8.207e-1441.86Macrophage metalloelastase OS=Mus musculus GN=Mmp1... [more]
MMP11_HUMAN8.207e-1442.11Stromelysin-3 OS=Homo sapiens GN=MMP11 PE=1 SV=2[more]
MMP17_MOUSE1.072e-1346.15Matrix metalloproteinase-17 OS=Mus musculus GN=Mmp... [more]
MMP19_MOUSE5.320e-1337.31Matrix metalloproteinase-19 OS=Mus musculus GN=Mmp... [more]
MMP19_HUMAN6.948e-1340.52Matrix metalloproteinase-19 OS=Homo sapiens GN=MMP... [more]
095L_IIV32.640e-1238.46Probable matrix metalloproteinase 095L OS=Inverteb... [more]
MMP_TNAVC3.812e-1134.43Putative matrix metalloproteinase OS=Trichoplusia ... [more]
MMP_SFAVA8.493e-1140.65Putative matrix metalloproteinase OS=Spodoptera fr... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CG10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873519 ID=FC873519; Name=FC873519; organism=Citrus clementina; type=EST; length=614bp
CGACCGCCGATATCAGGATCGGGTTCTTTACTGGCGATCACGGTGACGGC
GAGCCGTTTGATGGGCCTATGGGCACGCTGGCGCACGCCTTCTCGCCACC
AAATGGACGGTTCCATTTAGACGGCGACGAGAACTGGGTAATCACGAGTG
GTACTACAACGTCGATATCGATGTCGGCGATTGATCTTGAGTCAGTTGCT
GTTCATGAGATTGGCCACTTGTTAGGGTTGGGGCATTCATCTGTTGAAGA
TGCGATAATGTACCCTTCAATTTCTTCTGGATCCAGGAAAGTTGAATTGG
CCAACGATGATATACAGGGGATCCAGGCCCTGTACGGTAATAATCCAAAT
TTCAACGGCTCATCTGCGCCGACCGATCAACAGAGGGACACCAGCGATGC
CCATGGGGCTTATTTTTTGGGCTCTTGTTTGGGCCTGAGTTTCTTCGTGG
TGGCCGCTGTTTTGGGCCTGTAGATTTTTTAAATTAATTTATTATTTTTT
TTAGGGATATATTATTGCCTGAGATATTTGTTTCTGCTTCCATTCCATTT
GCTTGTGGAAGCAATTATAATATATCCGGCAACAAGCTTTGGTTTCAAAA
AAAAAAAAAAAAAA
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