FC873522

Overview
NameFC873522
Unique NameFC873522
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length815
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873522 vs. ExPASy Swiss-Prot
Match: PP2C3_SCHPO (Protein phosphatase 2C homolog 3 OS=Schizosaccharomyces pombe GN=ptc3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.523e-20
Identity = 73/231 (31.60%), Postives = 111/231 (48.05%), Query Frame = 2
Query:    5 AEYVKHNLFSNLIRHPKFIS-DTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGD--------RLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIK----PIQDPEEAAKRLMQEAYQRGS------ADNITCVVVRFLANQGGSSF 640
            A++   NL   L ++P F   D  +A+  ++ + D   L  +      +G TA+  + VG++L  AN GDSR V+   G A  +S DHKP    E+ RI  AGGFV +    RV G LA+SRA GD           KQ V A P++    I    EF++LA DG+WD  T+++ +  ++         E+ A+ LM       +       DN+T  +V  L     S++
Sbjct:   70 AKWCGSNLPQILEKNPDFQKGDFVNALKSSFLNADKAILDDDQFHTDPSGCTATVVLRVGNKLYCANAGDSRTVLGSKGIAKPLSADHKPSNEAEKARICAAGGFVDFG---RVNGNLALSRAIGDFEFKNSNLEPEKQIVTALPDVVVHEITDDDEFVVLACDGIWDCKTSQQVIEFVRRGIVAGTSLEKIAENLMDNCIASDTETTGLGCDNMTVCIVALLQENDKSAW 297          
BLAST of FC873522 vs. ExPASy Swiss-Prot
Match: P2C73_ORYSJ (Probable protein phosphatase 2C 73 OS=Oryza sativa subsp. japonica GN=Os11g0109000 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.825e-20
Identity = 59/195 (30.26%), Postives = 104/195 (53.33%), Query Frame = 2
Query:   32 SNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGN-----AIAVSRDHKPDQTDERQRIEDAGGFV-----------MWAGTWRVGGVLAVSRAFGDRLLKQY-VVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEA 565
            S+     + +S  K+     +   D +  +        +G+TA T +  GD L++AN+GDSRAV+C   +     ++ ++ D KP+   E +RI ++ G V           MW       G LA++RAFGD  LK + ++  PE+    + +  +FL+LA+DG+WDV++N+E + ++    D  +AAK+L++ A
Sbjct:  120 SDTSNEKQLLSTWKNIFVKTFEDVDEDLRQHSGIDCICSGTTAVTVVRQGDHLIIANLGDSRAVLCTRDSKDRPISVQLTTDLKPNLPSEAERILNSKGRVFAMDDEPDVPRMWLPDQDAPG-LAMARAFGDFCLKSHGLICTPEVYYRKLSAKDDFLVLATDGIWDVLSNKEVIKIVSSATDHSKAAKQLVERA 313          
BLAST of FC873522 vs. ExPASy Swiss-Prot
Match: P2C51_ARATH (Probable protein phosphatase 2C 51 OS=Arabidopsis thaliana GN=At3g63340 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 9.825e-20
Identity = 69/242 (28.51%), Postives = 121/242 (50.00%), Query Frame = 2
Query:   71 KSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVIC------------------------RG-------------GNAIA------VSRDHKPDQTDERQRIEDAGGFVM-WAGTWRVGGVLAVSRAFGDRLLKQY-VVADPEIQE-EVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEA------------AKRLMQEAYQRGSADNITCVVVRFLAN 622
            K A+  A    D  F K  +N+  ++GSTA+ A++   +L+VA++GDS+A++C                        RG             GN +       +++DH P++ DE+ R+E AGG+V  WAG  RV G L VSRA GD   + Y V++ PE+ + + + ++  FL+++SDG+++ +  +E   ++  + +   +            A  L+  A+++GS DN+  VVV   +N
Sbjct:  207 KEALLRAIHDIDVTFTKEASNRKLNSGSTATIALIADGQLMVASIGDSKALLCSEKFETLEEARATLVKLYRERRRNRGSSPSRFSDFKLEHGNGLLRFIAKELTKDHHPNREDEKIRVEAAGGYVTEWAGVPRVNGQLTVSRAIGDLTYRSYGVISAPEVMDWQPLVANDSFLVVSSDGIFEKLEVQEVCDLLWEVNNQTSSGAGVPSYCSISLADCLVNTAFEKGSMDNMAAVVVPLKSN 448          
BLAST of FC873522 vs. ExPASy Swiss-Prot
Match: P2C34_ARATH (Probable protein phosphatase 2C 34 OS=Arabidopsis thaliana GN=At3g05640 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.825e-20
Identity = 68/188 (36.17%), Postives = 107/188 (56.91%), Query Frame = 2
Query:  143 DAGSTASTAILVGDRLLVANVGDSRAVICRGGN-----AIAVSRDHKPDQTDERQRIEDAGGFVMWA----GTWRV------GGVLAVSRAFGDRLLKQY-VVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAY------QRGSA-DNITCVVVRFLANQGGSS 637
            ++G+TA T +  GD + +ANVGDSRAV+    +     A+ ++ D KP+   E +RI    G V       G  RV         LA+SRAFGD  +K Y +V+ PE+ +  I    +F+ILA+DG+WDV++N+EA+ ++    +  +AAKRL+Q+A       +RG A D+I+ V + F ++    S
Sbjct:  170 NSGTTALTIVRQGDVIYIANVGDSRAVLATVSDEGSLVAVQLTVDFKPNLPQEEERIIGCNGRVFCLQDEPGVHRVWQPVDESPGLAMSRAFGDYCIKDYGLVSVPEVTQRHISIRDQFIILATDGVWDVISNQEAIDIVSSTAERAKAAKRLVQQAVRAWNRKRRGIAMDDISAVCLFFHSSSSSPS 357          
BLAST of FC873522 vs. ExPASy Swiss-Prot
Match: PPM1A_RAT (Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.283e-19
Identity = 69/227 (30.40%), Postives = 109/227 (48.02%), Query Frame = 2
Query:    5 AEYVKHNLFSNLIRHPKF--------ISDTKSAIADAYSHTDSEF-LKSENNQNRD-AGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLK---------QYVVADPEIQE-EVIDSSLEFLILASDGLWDVVTNEEAVAMIKP----IQDPEEAAKRLMQEAYQRGSADNITCVVVRF 613
            A+Y   +L  ++  +  F        + + K+ I   +   D    + SE     D +GSTA   ++        N GDSR ++CR       ++DHKP    E++RI++AGG VM     RV G LAVSRA GD   K         Q V  +PE+ + E  +   +F+ILA DG+WDV+ NEE    ++       D E+    ++     +GS DN++ +++ F
Sbjct:   68 AKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVM---IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSRDNMSVILICF 291          
BLAST of FC873522 vs. ExPASy Swiss-Prot
Match: PPM1A_RABIT (Protein phosphatase 1A OS=Oryctolagus cuniculus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.283e-19
Identity = 69/227 (30.40%), Postives = 109/227 (48.02%), Query Frame = 2
Query:    5 AEYVKHNLFSNLIRHPKF--------ISDTKSAIADAYSHTDSEF-LKSENNQNRD-AGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLK---------QYVVADPEIQE-EVIDSSLEFLILASDGLWDVVTNEEAVAMIKP----IQDPEEAAKRLMQEAYQRGSADNITCVVVRF 613
            A+Y   +L  ++  +  F        + + K+ I   +   D    + SE     D +GSTA   ++        N GDSR ++CR       ++DHKP    E++RI++AGG VM     RV G LAVSRA GD   K         Q V  +PE+ + E  +   +F+ILA DG+WDV+ NEE    ++       D E+    ++     +GS DN++ +++ F
Sbjct:   68 AKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVM---IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSRDNMSVILICF 291          
BLAST of FC873522 vs. ExPASy Swiss-Prot
Match: PPM1A_MOUSE (Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.283e-19
Identity = 69/227 (30.40%), Postives = 109/227 (48.02%), Query Frame = 2
Query:    5 AEYVKHNLFSNLIRHPKF--------ISDTKSAIADAYSHTDSEF-LKSENNQNRD-AGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLK---------QYVVADPEIQE-EVIDSSLEFLILASDGLWDVVTNEEAVAMIKP----IQDPEEAAKRLMQEAYQRGSADNITCVVVRF 613
            A+Y   +L  ++  +  F        + + K+ I   +   D    + SE     D +GSTA   ++        N GDSR ++CR       ++DHKP    E++RI++AGG VM     RV G LAVSRA GD   K         Q V  +PE+ + E  +   +F+ILA DG+WDV+ NEE    ++       D E+    ++     +GS DN++ +++ F
Sbjct:   68 AKYCCEHLLDHITNNQDFRGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVM---IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSRDNMSVILICF 291          
BLAST of FC873522 vs. ExPASy Swiss-Prot
Match: PPM1A_HUMAN (Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.283e-19
Identity = 69/227 (30.40%), Postives = 109/227 (48.02%), Query Frame = 2
Query:    5 AEYVKHNLFSNLIRHPKF--------ISDTKSAIADAYSHTDSEF-LKSENNQNRD-AGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLK---------QYVVADPEIQE-EVIDSSLEFLILASDGLWDVVTNEEAVAMIKP----IQDPEEAAKRLMQEAYQRGSADNITCVVVRF 613
            A+Y   +L  ++  +  F        + + K+ I   +   D    + SE     D +GSTA   ++        N GDSR ++CR       ++DHKP    E++RI++AGG VM     RV G LAVSRA GD   K         Q V  +PE+ + E  +   +F+ILA DG+WDV+ NEE    ++       D E+    ++     +GS DN++ +++ F
Sbjct:   68 AKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVM---IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSRDNMSVILICF 291          
BLAST of FC873522 vs. ExPASy Swiss-Prot
Match: P2C76_ORYSJ (Putative protein phosphatase 2C 76 OS=Oryza sativa subsp. japonica GN=Os11g0586100 PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.283e-19
Identity = 66/232 (28.45%), Postives = 111/232 (47.84%), Query Frame = 2
Query:   71 KSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGG--------------------------------------NAIAVSRDHKPDQTDERQRIEDAGGFVM-WAGTWRVGGVLAVSRAFGDRLLKQY-VVADPEIQE-EVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQ------------DPEEAAKRLMQEAYQRGSADNITCVVV 607
            K ++  A    D  F K     N ++GSTA+  ++V  +++ ANVGDS+A +C                                         N   +++DH PD+ DER R+E AGG+V+ WAG  RV G LA+SRA GD   K+Y V+  PE+ E + + ++  FLI +SDG+++ +T ++   ++  ++                 A  ++  A ++G+ DN+  V+V
Sbjct:  224 KESLLRAVHDVDLTFSKEALRNNFESGSTAAVILIVDGQIIAANVGDSKAFLCSESHDSSIDKKTSVVSGKRRRKRNSNNRDDFALANYDGPFYNVKELTKDHHPDREDERSRVEAAGGYVLEWAGVHRVNGELALSRAIGDVPYKRYGVIPTPELTEWQSLSANDTFLIASSDGVFEKMTMQDVCDLMLRVKLGVNQELGSFAVTQRNLADYVVDLALEKGTTDNVAAVIV 455          
BLAST of FC873522 vs. ExPASy Swiss-Prot
Match: PP2C1_CAEEL (Probable protein phosphatase 2C F42G9.1 OS=Caenorhabditis elegans GN=F42G9.1 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.676e-19
Identity = 51/136 (37.50%), Postives = 82/136 (60.29%), Query Frame = 2
Query:  143 DAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDR---------LLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPI 523
            D+G+TA   ++  D+++VAN GDSRAV+CR G A+ +S DHKP+   E  RI  AGG +      RV G L +SRAFGD          L +Q + A P+++ E +    EF+++A DG+W+ + +++ V  ++ +
Sbjct:  314 DSGTTACVCLVGKDKVIVANAGDSRAVLCRNGKAVDLSVDHKPEDEVETNRIHAAGGQI---EDGRVNGGLNLSRAFGDHAYKKNQELGLKEQMITALPDVKIEALTPEDEFIVVACDGIWNSMESQQVVDFVRDL 446          
The following BLAST results are available for this feature:
BLAST of FC873522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
PP2C3_SCHPO7.523e-2031.60Protein phosphatase 2C homolog 3 OS=Schizosaccharo... [more]
P2C73_ORYSJ9.825e-2030.26Probable protein phosphatase 2C 73 OS=Oryza sativa... [more]
P2C51_ARATH9.825e-2028.51Probable protein phosphatase 2C 51 OS=Arabidopsis ... [more]
P2C34_ARATH9.825e-2036.17Probable protein phosphatase 2C 34 OS=Arabidopsis ... [more]
PPM1A_RAT1.283e-1930.40Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm... [more]
PPM1A_RABIT1.283e-1930.40Protein phosphatase 1A OS=Oryctolagus cuniculus GN... [more]
PPM1A_MOUSE1.283e-1930.40Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE... [more]
PPM1A_HUMAN1.283e-1930.40Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE... [more]
P2C76_ORYSJ1.283e-1928.45Putative protein phosphatase 2C 76 OS=Oryza sativa... [more]
PP2C1_CAEEL1.676e-1937.50Probable protein phosphatase 2C F42G9.1 OS=Caenorh... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3BD01FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BD01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873522 ID=FC873522; Name=FC873522; organism=Citrus clementina; type=EST; length=815bp
AGCTGCTGAGTATGTGAAACACAACCTCTTCAGCAATCTGATCAGGCATC
CAAAGTTCATATCTGATACCAAATCGGCAATAGCTGATGCATACAGCCAC
ACAGACTCGGAATTTCTGAAGTCAGAAAACAATCAAAACAGGGATGCTGG
ATCTACTGCTTCCACTGCCATCCTTGTTGGTGATCGCTTACTTGTTGCAA
ATGTGGGTGACTCCAGAGCTGTTATATGCAGGGGCGGTAATGCTATTGCC
GTATCGCGAGATCACAAACCAGACCAAACAGATGAGCGTCAACGGATTGA
GGATGCAGGAGGGTTTGTGATGTGGGCTGGAACTTGGAGAGTGGGAGGAG
TTCTTGCCGTTTCTCGCGCATTTGGTGACAGACTCTTGAAGCAGTATGTT
GTTGCTGATCCCGAAATTCAGGAGGAAGTTATTGACAGCTCCCTTGAGTT
TCTTATCCTTGCAAGTGATGGACTTTGGGATGTCGTCACAAATGAGGAAG
CTGTTGCGATGATCAAACCAATCCAGGATCCAGAGGAGGCAGCGAAGAGG
CTGATGCAGGAGGCATATCAGAGAGGCAGCGCAGACAACATCACCTGTGT
CGTTGTTCGGTTCTTGGCCAATCAAGGTGGTTCATCCTTTCCTGGCTCTG
CATGAACATCCTTTCATAGCCACCGCTCTGCTTTTGTTCTCTACATGGGC
ATCCTTTCAGTGGTCTACAGCTAGTAGTCATAGAAAAATTACAGTTTCGT
TGTACTTTGTAATGATAAAACATGAACAAAAAGCCTACCCCGGGCGTTAA
TGTGTATTACGTATT
back to top