FC873523

Overview
NameFC873523
Unique NameFC873523
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length854
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873523 vs. ExPASy Swiss-Prot
Match: RS7_DICDI (40S ribosomal protein S7 OS=Dictyostelium discoideum GN=rps7 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.475e-47
Identity = 100/184 (54.35%), Postives = 132/184 (71.74%), Query Frame = 2
Query:   77 KKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ---RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDY 619
            KKI K      TEFE TVAQAL DLEN N ELK DLKDL +    ++DV+ ++KA+V++VP+R  K Y KI  +L  E+EKK  GK V+ IA RRI+R P   + ++   RP SRT+ AVHDA+L+D+V+P  IVG+R+RYRLDGSK+ KI+LD KE  +   K++SFS VY KLTGK+VVF++
Sbjct:    4 KKIIKPAGKVATEFENTVAQALVDLENNNAELK-DLKDLSVCSVKEVDVAESKKAVVIFVPFRQLKNYNKIQQKLTYEVEKKLGGKQVMFIAQRRIIRKPASNNKIKMQKRPISRTIKAVHDAILDDLVFPNTIVGRRLRYRLDGSKLHKIYLDRKEMLSNISKVDSFSAVYHKLTGKEVVFEF 186          
BLAST of FC873523 vs. ExPASy Swiss-Prot
Match: RS7_SPOFR (40S ribosomal protein S7 OS=Spodoptera frugiperda GN=RpS7 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.011e-46
Identity = 96/185 (51.89%), Postives = 140/185 (75.68%), Query Frame = 2
Query:   80 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV----QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 622
            KI K   AEP  FE +++QAL +LE TN +LK+ L++LYI +A ++++  N+K+I++YVP    KA++KI  RLVRELEKKFSGK VV I  R+I+  P   + V    +RPRSRTLT+V+DA+LED+V+PAEIVGKR+R +LDGS++IK+ LD  ++   E+K+++F  VY+KLTG++V F++P
Sbjct:    4 KIIKASAAEPDVFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFIGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRIKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 186          
BLAST of FC873523 vs. ExPASy Swiss-Prot
Match: RS7_CAEEL (40S ribosomal protein S7 OS=Caenorhabditis elegans GN=rps-7 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.253e-46
Identity = 94/186 (50.54%), Postives = 134/186 (72.04%), Query Frame = 2
Query:   80 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ-----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 622
            K+ K      +E E+ V+QAL DLE TN +++S LK+LYI    ++++ GN+ AI++YVP    KA+ KIH  LVRELEKKF G+D++++A RRI+  P++GS  +     RPRSRTLTAVHDA L+++VYPAE+VG+R+R +LDG K+ K+ LD   + N  +K+  F+ VYRKLTGKDV F++P
Sbjct:    7 KLLKSDGKVVSEIEKQVSQALIDLE-TNDDVQSQLKELYIVGVKEVEL-GNKSAIIIYVPVPQLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFP 190          
BLAST of FC873523 vs. ExPASy Swiss-Prot
Match: RS7_DROME (40S ribosomal protein S7 OS=Drosophila melanogaster GN=RpS7 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.554e-46
Identity = 93/185 (50.27%), Postives = 142/185 (76.76%), Query Frame = 2
Query:   80 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSA----VQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 622
            KI K   ++P +FE+++AQAL +LE  N +LK  L+DL+I +A +++  G++KA+++YVP   +K ++KI   LVRELEKKFSGK VV+IA R+I+  P + +      +RPRSRTLTAV+DA+LED+V+PAEIVGKR+R +LDGS+++K+ LD  ++   E+K+++F+ VY+KLTG+DV F++P
Sbjct:    6 KIIKPGGSDPDDFEKSIAQALVELE-ANSDLKPYLRDLHITRAREIEF-GSKKAVIIYVPIPQQKVFQKIQIILVRELEKKFSGKHVVVIAERKILPKPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQLVKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFP 188          
BLAST of FC873523 vs. ExPASy Swiss-Prot
Match: RS7_MANSE (40S ribosomal protein S7 OS=Manduca sexta GN=RpS7 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.460e-45
Identity = 94/185 (50.81%), Postives = 138/185 (74.59%), Query Frame = 2
Query:   80 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV----QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 622
            KI K    E   FE +++QAL +LE TN +LK+ L++LYI +A ++++  N+K+I++YVP    KA++KI  RLVRELEKKFSGK VV I  R+I+  P   + V    +RPRSRTLT+V+DA+LED+V+PAEIVGKR+R +LDGS++IK+ LD  ++   E+K+++F  VY+KLTG++V F++P
Sbjct:    4 KILKAGGTEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFIGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 186          
BLAST of FC873523 vs. ExPASy Swiss-Prot
Match: RS7_DROYA (40S ribosomal protein S7 OS=Drosophila yakuba GN=RpS7 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.907e-45
Identity = 92/185 (49.73%), Postives = 141/185 (76.22%), Query Frame = 2
Query:   80 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSA----VQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 622
            KI K   ++P +FE+++AQAL +LE  N +LK  L+DL+I +A +++  G++KA+++YVP   +K ++KI   LVRELEKKFSGK VV+I  R+I+  P + +      +RPRSRTLTAV+DA+LED+V+PAEIVGKR+R +LDGS+++K+ LD  ++   E+K+++F+ VY+KLTG+DV F++P
Sbjct:    6 KIIKPGGSDPDDFEKSIAQALVELE-ANSDLKPYLRDLHITRAREIEF-GSKKAVIIYVPIPQQKVFQKIQIILVRELEKKFSGKHVVVIGERKILPKPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQLVKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFP 188          
BLAST of FC873523 vs. ExPASy Swiss-Prot
Match: RS7_NEUCR (40S ribosomal protein S7 OS=Neurospora crassa GN=rps-7 PE=3 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 5.548e-45
Identity = 89/182 (48.90%), Postives = 131/182 (71.98%), Query Frame = 2
Query:  107 PTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ------RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITDA 634
            P+E E  VA AL+DLE+   +LK+ L+ L    A +++V   +KAIV++VP    + + ++  RL RELEKKFS + V+++A+RRI+  PK+ S  +      RPRSRTLTAVHDA+L D+VYP EIVGKR+R + DGSK +K+ LD KER + +Y+L+++S VYR+LTGK+V+F++P+  A
Sbjct:   19 PSELETAVAGALYDLESNTADLKAALRPLQFVSAREIEVGHGKKAIVIFVPVPSLQGFHRVQQRLTRELEKKFSDRHVLIVASRRILPRPKRSSRSRNTLKQKRPRSRTLTAVHDAILTDLVYPVEIVGKRLRVKEDGSKTLKVILDEKERGSVDYRLDTYSAVYRRLTGKNVLFEFPLVSA 200          
BLAST of FC873523 vs. ExPASy Swiss-Prot
Match: RS7B_YEAST (40S ribosomal protein S7-B OS=Saccharomyces cerevisiae GN=RPS7B PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.108e-44
Identity = 90/174 (51.72%), Postives = 123/174 (70.69%), Query Frame = 2
Query:  107 PTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS--AVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 622
            P+E E  VA+   DLE+++ ELK+DL+ L I    ++DV+G +KA+V++VP     AY K+ ++L RELEKKF  + V+ +A RRI+  P + S    +RPRSRTLTAVHD +LED+V+P EIVGKRVRY + G+KI K+ LD K+    +YKLESF  VY KLTGK +VF+ P
Sbjct:   13 PSELELQVAKTFIDLESSSPELKADLRPLQIKSIREIDVTGGKKALVLFVPVPALSAYHKVQTKLTRELEKKFPDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKVLEDMVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIP 186          
BLAST of FC873523 vs. ExPASy Swiss-Prot
Match: RS7A_YEAST (40S ribosomal protein S7-A OS=Saccharomyces cerevisiae GN=RPS7A PE=1 SV=4)

HSP 1 Score: 176.792 bits (447), Expect = 1.367e-43
Identity = 88/174 (50.57%), Postives = 121/174 (69.54%), Query Frame = 2
Query:  107 PTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS--AVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 622
            PTE E  VAQA  +LEN++ ELK++L+ L      ++DV+G +KA+ ++VP      + K+ ++L RELEKKF  + V+ +A RRI+  P + S    +RPRSRTLTAVHD +LED+V+P EIVGKRVRY + G+KI K+ LD K+    +YKLESF  VY KLTGK +VF+ P
Sbjct:   13 PTELELQVAQAFVELENSSPELKAELRPLQFKSIREIDVAGGKKALAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIP 186          
The following BLAST results are available for this feature:
BLAST of FC873523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS7_DICDI3.475e-4754.3540S ribosomal protein S7 OS=Dictyostelium discoide... [more]
RS7_SPOFR1.011e-4651.8940S ribosomal protein S7 OS=Spodoptera frugiperda ... [more]
RS7_CAEEL2.253e-4650.5440S ribosomal protein S7 OS=Caenorhabditis elegans... [more]
RS7_DROME6.554e-4650.2740S ribosomal protein S7 OS=Drosophila melanogaste... [more]
RS7_MANSE1.460e-4550.8140S ribosomal protein S7 OS=Manduca sexta GN=RpS7 ... [more]
RS7_DROYA1.907e-4549.7340S ribosomal protein S7 OS=Drosophila yakuba GN=R... [more]
RS7_NEUCR5.548e-4548.9040S ribosomal protein S7 OS=Neurospora crassa GN=r... [more]
RS7B_YEAST2.108e-4451.7240S ribosomal protein S7-B OS=Saccharomyces cerevi... [more]
RS7A_YEAST1.367e-4350.5740S ribosomal protein S7-A OS=Saccharomyces cerevi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BD02FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873523 ID=FC873523; Name=FC873523; organism=Citrus clementina; type=EST; length=854bp
GCTTGTGTGTTTTTTTCTACTCGTGCATACAGATCTAAAAGCTTCGCTGC
GAGCTGTCAAGATGTTCACGACTAAGAAGAAAATCCAAAAAGACAAGGAT
GCCGAACCTACTGAGTTTGAGGAGACAGTTGCCCAGGCACTGTTTGATTT
GGAGAATACCAACCAGGAGCTTAAAAGTGACTTGAAAGATCTTTACATTA
ATCAAGCCATTCAAATGGATGTTTCTGGAAACCGCAAGGCAATTGTTGTC
TATGTGCCTTACAGATTGAGGAAGGCTTATCGGAAGATTCATTCTCGCCT
TGTGAGAGAGCTGGAGAAGAAATTCAGTGGCAAGGATGTTGTACTCATTG
CCACCCGAAGGATAGTCAGGCCACCAAAGAAAGGCTCTGCTGTTCAGAGA
CCTCGCAGTCGCACACTCACAGCTGTTCATGATGCCATGCTTGAAGATGT
AGTTTACCCAGCTGAGATTGTTGGAAAACGTGTCAGATACCGTCTCGATG
GATCCAAAATAATCAAGATTTTCTTGGATCCAAAGGAGAGGAACAACACG
GAGTACAAGTTGGAGTCTTTTTCAGGGGTTTACAGAAAGCTTACCGGCAA
AGACGTGGTTTTTGATTATCCAATTACAGATGCCTGAAGAGTTGTTGCAG
ATGATCATTTGTGTTTGTCACTGTTTATTTTGTTGCACTATAATTTTGAT
TTGGATAGGGTACTATTTAAAATTTTGACTCTTAAATTTGGTATGACATC
ATTTTGCATAGGACAGATGAAGCTTTATGAATTTCTTTTTGTTTCTTCAT
TTCATGAAATTGTTGAGCTGAAAAACATCGTGCCTTCTTATTTGAGTGAG
ATCT
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