FC873558

Overview
NameFC873558
Unique NameFC873558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1236 contig Ccv1_Contig1236:3..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP3AT_PIG (Cytochrome P450 3A29 OS=Sus scrofa GN=CYP3A29 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 63/184 (34.24%), Postives = 106/184 (57.61%), Query Frame = 3
Query:  165 EQEKGPKDLLGLMIQASSNSS----SNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            +Q+K   DLL LMI + ++       ++++ +++ +   F FAG +TTS+ L+     LA HP  Q   +EE+     ++  PT D +A+++ L M++NE+LRLYP      R  K DVE+ G  +P+GT +++P+  +H D  +W  E  +F P RFS+   +   +P  ++PFG G R C+G
Sbjct:  263 DQQKRRVDLLQLMINSQNSKEMDPHKSLSNEELVAQGIIFIFAGYETTSSALSLLAYELATHPDVQQKLQEEIEATFPNKAPPTYDALAQMEYLDMVVNETLRLYPIAARLERACKKDVEIHGVFVPKGTVVVVPVFVLHRDPDLW-PEPEEFRPERFSK-KHKDTINPYTYLPFGTGPRNCIG 444          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP3A9_RAT (Cytochrome P450 3A9 OS=Rattus norvegicus GN=Cyp3a9 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.075e-25
Identity = 67/185 (36.22%), Postives = 106/185 (57.30%), Query Frame = 3
Query:  162 EEQEKGPKDLLGLMIQASSN----SSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            +E+EK   D L LMI + ++    S   ++D +I+ +   F FAG +TTS+ L++   LLA+HP  Q   ++E+     ++   T D + +++ L M++NE+LRLYP      R  K DVE+ G  IP+GT ++IP  A+H D   W  E  +F P RFS+   +   +P  ++PFG G R C+G
Sbjct:  262 KEKEKQRMDFLQLMINSQNSKVKDSHKALSDVEIVAQSVIFIFAGYETTSSALSFVLYLLAIHPDIQKKLQDEIDAALPNKAHATYDTLLQMEYLDMVVNETLRLYPIAGRLERVCKTDVEINGVFIPKGTVVMIPTFALHKDPHYW-PEPEEFRPERFSK-KNQDNINPYMYLPFGNGPRNCIG 444          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP4F5_RAT (Cytochrome P450 4F5 OS=Rattus norvegicus GN=Cyp4f5 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 70/211 (33.18%), Postives = 111/211 (52.61%), Query Frame = 3
Query:   84 TNEVDRERKANGNSKNKTMMATAMPQEEQEKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTR---DDVAKLKTLSMILNESLRLYPPIIATIRRAKADVEL-GGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            T+ V RER+   +S+       +  + + +    D + +++ A       ++D DI  E  +F F G  TT++ L+W    LA HP +Q   R+EV  +   R+ P     DD+A+L  L+M + ESLRL+PP I  +RR   D+ L  G  IP+G   +I I  +HH+ ++W  +   F+P RF +   R  + P+ FIPF  G R C+G
Sbjct:  267 TDAVIRERRRLLSSQGTDEFLESKTKSKSKT--LDFIDVLLLAKDEHGKELSDEDIRAEADTFMFGGHDTTASALSWILYNLARHPEYQERCRQEVWELLRDRE-PEEIEWDDLAQLPFLTMCIKESLRLHPPAIDLLRRCTQDIVLPDGRVIPKGNICVISIFGIHHNPSVW-PDPEVFDPFRF-DSENRQKRSPLSFIPFSAGPRNCIG 472          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP4B1_RAT (Cytochrome P450 4B1 OS=Rattus norvegicus GN=Cyp4b1 PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24
Identity = 66/208 (31.73%), Postives = 110/208 (52.88%), Query Frame = 3
Query:   84 TNEVDRERKANGNSKNKTMMATAMPQEEQEKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVE-LGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            T+EV R+RKA    + +        ++ Q++   D L +++     S   ++D ++  E  +F F G  TT++ ++W    +A++P  Q L REEV  + G +D    DD+AK+  L+M + E  RLYPP+    R+    V  + G  +P G+ + + I A+H +  +W  +   F+P RFS   A A +HP  F+PF  G R C+G
Sbjct:  257 TDEVIRQRKAALQDEKER-------KKIQQRRHLDFLDILLGVRDESGIKLSDAELRAEVDTFMFEGHDTTTSGISWFLYCMALYPEHQQLCREEVRGILGDQDSFQWDDLAKMTYLTMCMKECFRLYPPVPQVYRQLNKPVTFVDGRSLPAGSLISLHIYALHRNSTVW-PDPEVFDPLRFSPENA-AGRHPFAFMPFSAGPRNCIG 455          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP4B1_MOUSE (Cytochrome P450 4B1 OS=Mus musculus GN=Cyp4b1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.015e-24
Identity = 67/214 (31.31%), Postives = 110/214 (51.40%), Query Frame = 3
Query:   66 QADQEITNEVDRERKANGNSKNKTMMATAMPQEEQEKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVE-LGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            Q   + T+ V R+RKA    + +        ++ QE+   D L +++ A   S   ++D D+  E  +F F G  TT++ ++W    +A++P  Q   REEV  + G RD    DD+A++  L+M + E  RLYPP+    R+    V  + G  +P G+ + + I A+H + A+W  +   F+P RFS       +HP  F+PF  G R C+G
Sbjct:  251 QIAHDHTDHVIRQRKAALQDEKEQ-------KKLQERRHLDFLDILLGARDESGIKLSDADLRAEVDTFMFEGHDTTTSGISWFLYCMALYPMHQQRCREEVREILGDRDSFQWDDLAQMTYLTMCMKECFRLYPPVPQVYRQLSKPVTFVDGRSLPAGSLISLHIYALHRNSAVW-PDPEVFDPLRFSP-ENMTGRHPFAFMPFSAGPRNCIG 455          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: C13B1_CAEEL (Putative cytochrome P450 cyp-13B1 OS=Caenorhabditis elegans GN=cyp-13B1 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.015e-24
Identity = 65/168 (38.69%), Postives = 93/168 (55.36%), Query Frame = 3
Query:  204 IQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPI-IATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            I+  S     +T  D+I  C  F  AG  TT+N L + + LLA HP    LA+EEV  V GS ++ + DD+ KLK L  ++ ESLRLYP    A  R       LG   I +G ++   ++++H  + IWG  A+DF P R+ E    +++H + +IPFG G R CVG
Sbjct:  295 IEFGSTVEKKVTAEDVIGACFVFLLAGFDTTANSLAYASYLLAKHPEKMKLAQEEVDTVVGSENV-SYDDMTKLKYLDAVVRESLRLYPVAWFACSRECVKPTTLGDIYIDKGVKIEADVMSLHRSKEIWGENADDFVPERWLE---PSSRHTMSWIPFGAGPRQCVG 458          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP4F6_RAT (Cytochrome P450 4F6 OS=Rattus norvegicus GN=Cyp4f6 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 69/211 (32.70%), Postives = 109/211 (51.66%), Query Frame = 3
Query:   84 TNEVDRERKANGNSKNKTMMATAMPQEEQEKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTR---DDVAKLKTLSMILNESLRLYPPIIATIRRAKADVEL-GGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            T+ V RER++  N++       A  + +      D + +++ A       ++D DI  E  +F F G  TT++ L+W    LA HP +Q   R+EV  +   R+ P     DD+A+L  L+M + ESLRL+PP++   R    D+ L  G  IP+G   +I I  VHH+ ++W  +   +NP RF     +  + P+ FIPF  G R C+G
Sbjct:  267 TDAVIRERRSTLNTQGVDEFLKARAKTKT----LDFIDVLLLAKDEHGKGLSDVDIRAEADTFMFGGHDTTASALSWILYNLARHPEYQERCRQEVRELLRDRE-PEEIEWDDLAQLPFLTMCIKESLRLHPPVLLISRCCSQDIVLPDGRVIPKGNICVISIFGVHHNPSVW-PDPEVYNPFRFDPENPQ-KRSPLAFIPFSAGPRNCIG 470          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP4B1_HUMAN (Cytochrome P450 4B1 OS=Homo sapiens GN=CYP4B1 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 66/214 (30.84%), Postives = 110/214 (51.40%), Query Frame = 3
Query:   66 QADQEITNEVDRERKANGNSKNKTMMATAMPQEEQEKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVE-LGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            Q   + T++V RERKA        +    + ++ Q +   D L +++ A       ++D D+  E  +F F G  TT++ ++W    +A++P  Q   REEV  + G +D    DD+ K+  L+M + ES RLYPP+    R+    V  + G  +P G+ + + I A+H + A+W  +   F+  RFS   A + +HP  F+PF  G R C+G
Sbjct:  251 QVAHDHTDQVIRERKA-------ALQDEKVRKKIQNRRHLDFLDILLGARDEDDIKLSDADLRAEVDTFMFEGHDTTTSGISWFLYCMALYPEHQHRCREEVREILGDQDFFQWDDLGKMTYLTMCIKESFRLYPPVPQVYRQLSKPVTFVDGRSLPAGSLISMHIYALHRNSAVW-PDPEVFDSLRFSTENA-SKRHPFAFMPFSAGPRNCIG 455          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP3AS_BOVIN (Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.717e-24
Identity = 59/177 (33.33%), Postives = 103/177 (58.19%), Query Frame = 3
Query:  186 DLLGLMIQASSNSSSN----ITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            DLL LMI + ++   +    ++D +++ +   F F G +TTS+ L++    L  HPH Q   +EE+     ++  PT D + +++ L M++NE+LR++P      R  K DVE+ G  IP+GT +L+P+  +H++  +W  E  +F P RFS+   + + +P  ++PFG G R C+G
Sbjct:  270 DLLQLMINSQNSKEIDNHKALSDIELVAQSTIFIFGGYETTSSTLSFIIYELTTHPHVQQKLQEEIDATFPNKAPPTYDALVQMEYLDMVVNETLRMFPIAGRLERVCKKDVEIHGVTIPKGTTVLVPLFVLHNNPELW-PEPEEFRPERFSKN-NKDSINPYVYLPFGTGPRNCLG 444          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP3A7_HUMAN (Cytochrome P450 3A7 OS=Homo sapiens GN=CYP3A7 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.717e-24
Identity = 66/185 (35.68%), Postives = 103/185 (55.68%), Query Frame = 3
Query:  162 EEQEKGPKDLLGLMIQASSNSSSN----ITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            +E +K   D L LMI + ++  S     ++D +++ +   F FAG +TTS++L++    LA HP  Q   ++E+  V  ++  PT D V +L+ L M++NE+LRL+P  +   R  K DVE+ G  IP+G  ++IP   +HHD   W  E   F P RFS+   +    P  + PFG G R C+G
Sbjct:  262 KETQKHRVDFLQLMIDSQNSKDSETHKALSDLELMAQSIIFIFAGYETTSSVLSFIIYELATHPDVQQKVQKEIDTVLPNKAPPTYDTVLQLEYLDMVVNETLRLFPVAMRLERVCKKDVEINGMFIPKGVVVMIPSYVLHHDPKYW-REPEKFLPERFSK-KNKDNIDPYIYTPFGSGPRNCIG 444          
The following BLAST results are available for this feature:
BLAST of FC873558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 466
Match NameE-valueIdentityDescription
CP3AT_PIG4.652e-2534.24Cytochrome P450 3A29 OS=Sus scrofa GN=CYP3A29 PE=2... [more]
CP3A9_RAT6.075e-2536.22Cytochrome P450 3A9 OS=Rattus norvegicus GN=Cyp3a9... [more]
CP4F5_RAT7.935e-2533.18Cytochrome P450 4F5 OS=Rattus norvegicus GN=Cyp4f5... [more]
CP4B1_RAT1.353e-2431.73Cytochrome P450 4B1 OS=Rattus norvegicus GN=Cyp4b1... [more]
CP4B1_MOUSE3.015e-2431.31Cytochrome P450 4B1 OS=Mus musculus GN=Cyp4b1 PE=1... [more]
C13B1_CAEEL3.015e-2438.69Putative cytochrome P450 cyp-13B1 OS=Caenorhabditi... [more]
CP4F6_RAT5.143e-2432.70Cytochrome P450 4F6 OS=Rattus norvegicus GN=Cyp4f6... [more]
CP4B1_HUMAN5.143e-2430.84Cytochrome P450 4B1 OS=Homo sapiens GN=CYP4B1 PE=1... [more]
CP3AS_BOVIN6.717e-2433.33Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2... [more]
CP3A7_HUMAN6.717e-2435.68Cytochrome P450 3A7 OS=Homo sapiens GN=CYP3A7 PE=1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3BG01FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873558 ID=FC873558; Name=FC873558; organism=Citrus clementina; type=EST; length=704bp
AAAGTCTTCATCCCTGGCTACAGATTTTTGCCGACAAAAAGGAACATAAG
CTCATGGAAACTTGACAAGCAGATCAAGAGATCACTAACGAAGTTGATCG
AGAGAGAAAAGCGAATGGGAATAGCAAGAATAAGACGATGATGGCGACGG
CGATGCCGCAGGAGGAACAAGAAAAGGGACCAAAAGATTTGTTAGGGCTA
ATGATTCAAGCATCATCGAATTCCTCCTCCAACATAACAGATTATGACAT
AATTGAAGAGTGCAAGAGCTTCTTCTTTGCTGGCAAACAGACCACATCCA
ATCTGCTGACGTGGACAACCGTCCTTCTAGCTATGCACCCACACTGGCAG
GTGCTAGCACGTGAGGAGGTTCTAAGGGTGTGTGGATCACGTGACTTACC
CACCAGAGATGATGTTGCAAAGCTTAAGACCCTAAGCATGATACTAAATG
AATCCCTTCGATTGTATCCGCCAATAATCGCGACAATCAGACGGGCCAAG
GCCGACGTGGAGTTGGGTGGATACAAGATACCGCGTGGGACCGAGTTGCT
GATACCAATCCTGGCCGTTCATCACGACCAAGCAATTTGGGGGAGTGAGG
CAAACGATTTCAATCCAGCTAGATTCTCAGAGGGAGTGGCCCGGGCAGCG
AAGCATCCCGTGGGGTTCATACCATTCGGCCTTGGGGTCCGCACCTGCGT
TGGG
back to top