FC873558

Overview
NameFC873558
Unique NameFC873558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1236 contig Ccv1_Contig1236:3..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP4V3_MOUSE (Cytochrome P450 4V3 OS=Mus musculus GN=Cyp4v3 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24
Identity = 69/231 (29.87%), Postives = 112/231 (48.48%), Query Frame = 3
Query:   15 WLQIFADKKEHKLMET*QADQEITNEVDRERKANGNSKNKTMMATAMPQEEQEKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLP-TRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            W  +F + ++HK     +     TN V  ER     ++     A   P   + K  K  L L++  +    + ++  DI EE  +F F G  TT+  + W+  LL  +P  Q    +E+  V G    P T +D+ KLK L  ++ E+LR++P +    R    D E+GGYK+ +GTE +I   A+H D   +  +  +F P RF    ++  +HP  ++PF  G R C+G
Sbjct:  244 WYLVFKEGRDHK--RGLKCLHTFTNNVIAERVKERKAEEDWTGAGRGPIPSKNKR-KAFLDLLLSVTDEEGNRLSQEDIREEVDTFMFEGHDTTAAAINWSLYLLGTNPEVQRKVDQELDEVFGRSHRPVTLEDLKKLKYLDCVIKETLRVFPSVPLFARSLSEDCEVGGYKVTKGTEAIIIPYALHRDPRYF-PDPEEFRPERFFPENSQ-GRHPYAYVPFSAGPRNCIG 469          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP3A4_HUMAN (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 65/185 (35.14%), Postives = 104/185 (56.22%), Query Frame = 3
Query:  162 EEQEKGPKDLLGLMIQASSNSSSN----ITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            E+ +K   D L LMI + ++  +     ++D +++ +   F FAG +TTS++L++    LA HP  Q   +EE+  V  ++  PT D V +++ L M++NE+LRL+P  +   R  K DVE+ G  IP+G  ++IP  A+H D   W +E   F P RFS+   +    P  + PFG G R C+G
Sbjct:  262 EDTQKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYW-TEPEKFLPERFSK-KNKDNIDPYIYTPFGSGPRNCIG 444          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP3AE_CAVPO (Cytochrome P450 3A14 OS=Cavia porcellus GN=CYP3A14 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 62/185 (33.51%), Postives = 102/185 (55.14%), Query Frame = 3
Query:  162 EEQEKGPKDLLGLMIQASS----NSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            E  +K   D L +M+ + +     S   ++D +I+ +   F FAG +TTS+ L++    LA HP  Q   ++E+ +   ++  PT D + +++ L M++NE+LRLYP      R +K D E+ G   P+GT ++IP  A+H D   W  E ++F P RFS+   +    P  ++PFG G R C+G
Sbjct:  262 ESNKKQRVDFLQMMLNSQNFKDTESHKALSDVEILAQSIIFIFAGYETTSSTLSFIMYSLATHPDVQKKLQQEIDKTLPNKAFPTYDVMMEMEYLDMVVNETLRLYPVTNRIERMSKKDFEINGMSFPKGTGVMIPSFALHRDSKYW-PEPDEFRPERFSK-KNKENIDPYIYMPFGNGPRNCIG 444          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: C13A1_CAEEL (Putative cytochrome P450 CYP13A1 OS=Caenorhabditis elegans GN=cyp-13A1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 60/167 (35.93%), Postives = 93/167 (55.69%), Query Frame = 3
Query:  207 QASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYP-PIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            ++++ ++  +T  +I+ +C  F  AG  TT+  L++ T LLA HP  Q   +EEV R C + ++ T D ++KLK +  +  E+LRLYP    A  RR   + +LG  K+  GT + +    +H D  IWG +A DF P R+    +       G+IPFGLG R C+G
Sbjct:  302 KSTTYTNRQLTTEEIVGQCTVFLIAGFDTTALSLSYATYLLATHPEIQKKLQEEVNRECPNPEV-TIDQLSKLKYMECVFKEALRLYPLGAFANSRRCMRNTKLGNMKVEVGTMIQVDTWTLHTDPNIWGDDAEDFKPERWQTPNSDQIYQKSGYIPFGLGPRQCIG 467          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP4Z1_HUMAN (Cytochrome P450 4Z1 OS=Homo sapiens GN=CYP4Z1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 64/210 (30.48%), Postives = 106/210 (50.48%), Query Frame = 3
Query:   78 EITNEVDRERKANGNSKNKTMMATAMPQEEQEKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVEL-GGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            + T +V ++RK +   K K        Q+  +K   D L +++ A S ++ + ++ D+  E K+F FAG  TTS+ ++W    LA +P  Q   R+E+  + G     T + ++++   +M + E LRLY P++   R     +    G  +P G  + I I A+HH+   W  +   FNP RFS   +    HP  FIPF  G+R C+G
Sbjct:  255 QFTEKVIQDRKESLKDKLK--------QDTTQKRRWDFLDILLSAKSENTKDFSEADLQAEVKTFMFAGHDTTSSAISWILYCLAKYPEHQQRCRDEIRELLGDGSSITWEHLSQMPYTTMCIKECLRLYAPVVNISRLLDKPITFPDGRSLPAGITVFINIWALHHNPYFW-EDPQVFNPLRFSRENSEKI-HPYAFIPFSAGLRNCIG 454          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP4CU_BLAGE (Cytochrome P450 4c21 OS=Blattella germanica GN=CYP4C21 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 69/207 (33.33%), Postives = 103/207 (49.76%), Query Frame = 3
Query:   87 NEVDRERKANGNSKNKTMMATAMPQEEQEKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVC-GSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            N++ +ERK        T  +      ++++ P   L  ++ AS + +  +TD DI+EE  +F F G  T S  +TW    L  HP  Q  A +EV  +  GS  +PT  D+  +  L  ++ ESLRL+P +I  +R A  D ELGGY IP GT +   +  +H +  I+      FNP  F        +HP  +IPF  G R C+G
Sbjct:  248 NKIIQERKEERKKSKVTQTSEDADIGKKKRVP--FLDTLLDASEDDNK-LTDTDILEEVHTFMFEGHDTVSAAMTWLLFELGHHPEIQEEAYKEVQDIFQGSDRVPTMADLNNMNYLERVIKESLRLHPSVIYFVREAHQDFELGGYTIPAGTNIDFSVPFIHRNPEIF-PNPRCFNPDNFLPDRV-VNRHPYAYIPFSAGPRNCIG 449          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP4B1_RABIT (Cytochrome P450 4B1 OS=Oryctolagus cuniculus GN=CYP4B1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 64/214 (29.91%), Postives = 110/214 (51.40%), Query Frame = 3
Query:   66 QADQEITNEVDRERKANGNSKNKTMMATAMPQEEQEKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVE-LGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            +A  + T+ V R+RKA    + +        ++ Q +   D L +++     S   ++D D+  E  +F F G  TT++ ++W    +A++P  Q   REEV  + G +D    +D+AK+  L+M + E  RLYPP+    R+    V  + G  +P G+ + + I A+H +  +W  +   F+P RFS   + + +HP  FIPF  G R C+G
Sbjct:  246 RAAHDHTDRVIRQRKAALQDEKER-------EKIQNRRHLDFLDILLDVRGESGVQLSDTDLRAEVDTFMFEGHDTTTSGISWFLYCMALYPEHQQRCREEVREILGDQDSFQWEDLAKMTYLTMCMKECFRLYPPVPQVYRQLSKPVSFVDGRSLPAGSLISLHIYALHRNSDVW-PDPEVFDPLRFSPENS-SGRHPYAFIPFSAGPRNCIG 450          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP3A8_MACFA (Cytochrome P450 3A8 OS=Macaca fascicularis GN=CYP3A8 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 64/185 (34.59%), Postives = 103/185 (55.68%), Query Frame = 3
Query:  162 EEQEKGPKDLLGLMIQASSNSSSN----ITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            ++ +K   D L LMI + ++  +     ++D +++ +   F FAG +TTS++L++    LA HP  Q   +EE+  V  ++  PT D V +++ L M++NE+LR++P  +   R  K DVE+ G  IP+G  ++IP  A+HHD   W  E   F P RFS+        P  + PFG G R C+G
Sbjct:  262 KDTQKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIIYELATHPDVQQKLQEEIDTVLPNKAPPTYDTVLQMEYLDMVVNETLRIFPIAMRLERVCKKDVEINGIFIPKGVVVMIPSYALHHDPKYW-PEPEKFLPERFSK-KNNDNIDPYIYTPFGSGPRNCIG 444          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP4V2_HUMAN (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23
Identity = 69/231 (29.87%), Postives = 112/231 (48.48%), Query Frame = 3
Query:   15 WLQIFADKKEHKLMET*QADQEITNEVDRERKANGNSKNKTMMATAMPQEEQEKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLP-TRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            W  +F +  EHK  ++ +     TN V  ER AN  + N+            +   +  L L++  + +  + ++  DI EE  +F F G  TT+  + W+  LL  +P  Q     E+  V G  D P T +D+ KL+ L  ++ E+LRL+P +    R    D E+ GY++ +GTE +I   A+H D   +     +F P RF    A+  +HP  ++PF  G R C+G
Sbjct:  244 WYLMFKEGWEHK--KSLKILHTFTNSVIAER-ANEMNANEDCRGDGRGSAPSKNKRRAFLDLLLSVTDDEGNRLSHEDIREEVDTFMFEGHDTTAAAINWSLYLLGSNPEVQKKVDHELDDVFGKSDRPATVEDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYF-PNPEEFQPERFFPENAQ-GRHPYAYVPFSAGPRNCIG 469          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP3A6_RABIT (Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CYP3A6 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23
Identity = 64/185 (34.59%), Postives = 107/185 (57.84%), Query Frame = 3
Query:  162 EEQEKGPKDLLGLMIQASSN----SSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            ++++K   D L LMI + ++    S   + D +++ +     FAG +TTS+ L++   LLA HP  Q   +EE+  +  +++L T D + K++ L M++NE+LRLYP      R  K DV++ G  IP+GT +++P  A+H D   W +E ++F P RFS+   +   +P  + PFG G R C+G
Sbjct:  260 KDKQKRRVDFLQLMINSQNSKEIDSHKALDDIEVVAQSIIILFAGYETTSSTLSFIMHLLATHPDVQQKLQEEIDTLLPNKELATYDTLVKMEYLDMVVNETLRLYPIAGRLERVCKKDVDINGTFIPKGTIVMMPTYALHRDPQHW-TEPDEFRPERFSK-KNKDNINPYIYHPFGAGPRNCLG 442          
The following BLAST results are available for this feature:
BLAST of FC873558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 466
Match NameE-valueIdentityDescription
CP4V3_MOUSE8.773e-2429.87Cytochrome P450 4V3 OS=Mus musculus GN=Cyp4v3 PE=1... [more]
CP3A4_HUMAN1.146e-2335.14Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1... [more]
CP3AE_CAVPO1.496e-2333.51Cytochrome P450 3A14 OS=Cavia porcellus GN=CYP3A14... [more]
C13A1_CAEEL1.496e-2335.93Putative cytochrome P450 CYP13A1 OS=Caenorhabditis... [more]
CP4Z1_HUMAN1.954e-2330.48Cytochrome P450 4Z1 OS=Homo sapiens GN=CYP4Z1 PE=2... [more]
CP4CU_BLAGE1.954e-2333.33Cytochrome P450 4c21 OS=Blattella germanica GN=CYP... [more]
CP4B1_RABIT1.954e-2329.91Cytochrome P450 4B1 OS=Oryctolagus cuniculus GN=CY... [more]
CP3A8_MACFA1.954e-2334.59Cytochrome P450 3A8 OS=Macaca fascicularis GN=CYP3... [more]
CP4V2_HUMAN2.552e-2329.87Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1... [more]
CP3A6_RABIT2.552e-2334.59Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CY... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3BG01FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873558 ID=FC873558; Name=FC873558; organism=Citrus clementina; type=EST; length=704bp
AAAGTCTTCATCCCTGGCTACAGATTTTTGCCGACAAAAAGGAACATAAG
CTCATGGAAACTTGACAAGCAGATCAAGAGATCACTAACGAAGTTGATCG
AGAGAGAAAAGCGAATGGGAATAGCAAGAATAAGACGATGATGGCGACGG
CGATGCCGCAGGAGGAACAAGAAAAGGGACCAAAAGATTTGTTAGGGCTA
ATGATTCAAGCATCATCGAATTCCTCCTCCAACATAACAGATTATGACAT
AATTGAAGAGTGCAAGAGCTTCTTCTTTGCTGGCAAACAGACCACATCCA
ATCTGCTGACGTGGACAACCGTCCTTCTAGCTATGCACCCACACTGGCAG
GTGCTAGCACGTGAGGAGGTTCTAAGGGTGTGTGGATCACGTGACTTACC
CACCAGAGATGATGTTGCAAAGCTTAAGACCCTAAGCATGATACTAAATG
AATCCCTTCGATTGTATCCGCCAATAATCGCGACAATCAGACGGGCCAAG
GCCGACGTGGAGTTGGGTGGATACAAGATACCGCGTGGGACCGAGTTGCT
GATACCAATCCTGGCCGTTCATCACGACCAAGCAATTTGGGGGAGTGAGG
CAAACGATTTCAATCCAGCTAGATTCTCAGAGGGAGTGGCCCGGGCAGCG
AAGCATCCCGTGGGGTTCATACCATTCGGCCTTGGGGTCCGCACCTGCGT
TGGG
back to top