FC873558

Overview
NameFC873558
Unique NameFC873558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1236 contig Ccv1_Contig1236:3..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP4AM_HUMAN (Cytochrome P450 4A22 OS=Homo sapiens GN=CYP4A22 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.641e-20
Identity = 62/214 (28.97%), Postives = 107/214 (50.00%), Query Frame = 3
Query:   66 QADQEITNEVDRERKANGNSKNKTMMATAMPQEEQEKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVEL-GGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            Q   + T++V + RKA    + +        ++ + K   D L +++ A   + S ++D D+  E  +F F G  TT++ ++W    LA HP  Q   REE+  + G     T + + ++   +M + E+LRLYPP+    R     V    G  +P+G  +L+ I  +HH+  +W      F+P+RF+ G   +A+H   F+PF  G R C+G
Sbjct:  257 QLAHQHTDQVIQLRKAQLQKEGEL-------EKIKRKRHLDFLDILLLAKMENGSILSDKDLRAEVDTFMFEGHDTTASGISWILYALATHPKHQERCREEIHGLLGDGASITWNHLDQMPYTTMCIKEALRLYPPVPGIGRELSTPVTFPDGRSLPKGIMVLLSIYGLHHNPKVW-PNLEVFDPSRFAPG---SAQHSHAFLPFSGGSRNCIG 459          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: C356_FUNHE (Cytochrome P450 3A56 OS=Fundulus heteroclitus GN=cyp3a56 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.641e-20
Identity = 62/186 (33.33%), Postives = 98/186 (52.69%), Query Frame = 3
Query:  159 QEEQEKGPKDLLGLMIQASSNSSS----NITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            +  Q+K   D L LMI +  NS +    ++TD++I+ +   F FAG +T+S+ LT+    LA +P      +EE+     ++       + +++ L  ++NESLRL+P      R AKA VE+ G  IP+   ++IP   +H D  IW  E   F P RFS+   +    P  ++PFG G R C+G
Sbjct:  260 EASQQKSRVDFLQLMIDSQKNSGAQQDKSLTDHEILSQSMIFIFAGYETSSSSLTFLAYNLATNPEVMKKLQEEIDATFPNKAPVHYQPLMEMEYLDCVINESLRLFPIAARLERVAKAAVEINGIVIPKDMVVMIPTWPLHRDPEIW-PEPEAFKPERFSK-KNKDNIDPYIYMPFGSGPRNCIG 443          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: C330_FUNHE (Cytochrome P450 3A30 OS=Fundulus heteroclitus GN=cyp3a30 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.641e-20
Identity = 62/186 (33.33%), Postives = 98/186 (52.69%), Query Frame = 3
Query:  159 QEEQEKGPKDLLGLMIQASSNSSS----NITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            +  Q+K   D L LMI +  NS +    ++TD++I+ +   F FAG +T+S+ LT+    LA +P      +EE+     ++       + +++ L  ++NESLRL+P      R AKA VE+ G  IP+   ++IP   +H D  IW  E   F P RFS+   +    P  ++PFG G R C+G
Sbjct:  260 EASQQKSRVDFLQLMIDSQKNSGAQQDKSLTDHEILSQSMIFIFAGYETSSSSLTFLAYNLATNPEVMKKLQEEIDATFPNKAPVHYQPLMEMEYLDCVINESLRLFPIAARLERVAKAAVEINGVVIPKDMVVMIPTWPLHRDPEIW-PEPEAFKPERFSK-KNKDNIDPYIYMPFGSGPRNCIG 443          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CYPD_BACSU (Probable bifunctional P-450/NADPH-P450 reductase 1 OS=Bacillus subtilis GN=cypD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20
Identity = 70/209 (33.49%), Postives = 101/209 (48.33%), Query Frame = 3
Query:   81 ITNEVDRERKANGNSKNKTMMATAMPQEEQEKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGG-YKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            + + +  ER+ANG+   K ++A  +  E+ E G K                + D +I  +  +F  AG +TTS LL++ T  L  HP     A EEV RV  +   PT   V +L  + MILNESLRL+P   A     K D  +GG + I     + + I  +H D+  WG +A +F P RF E   +   H   + PFG G R C+G
Sbjct:  217 LVDSIIAERRANGDQDEKDLLARMLNVEDPETGEK----------------LDDENIRFQIITFLIAGHETTSGLLSFATYFLLKHPDKLKKAYEEVDRVL-TDAAPTYKQVLELTYIRMILNESLRLWPTAPAFSLYPKEDTVIGGKFPITTNDRISVLIPQLHRDRDAWGKDAEEFRPERF-EHQDQVPHH--AYKPFGNGQRACIG 405          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP4AB_HUMAN (Cytochrome P450 4A11 OS=Homo sapiens GN=CYP4A11 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20
Identity = 62/214 (28.97%), Postives = 106/214 (49.53%), Query Frame = 3
Query:   66 QADQEITNEVDRERKANGNSKNKTMMATAMPQEEQEKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVEL-GGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            Q   + T++V + RKA    + +        ++ + K   D L +++ A   + S ++D D+  E  +F F G  TT++ ++W    LA HP  Q   REE+  + G     T + + ++   +M + E+LRLYPP+    R     V    G  +P+G  +L+ I  +HH+  +W      F+P RF+ G   +A+H   F+PF  G R C+G
Sbjct:  257 QLAHQHTDQVIQLRKAQLQKEGEL-------EKIKRKRHLDFLDILLLAKMENGSILSDKDLRAEVDTFMFEGHDTTASGISWILYALATHPKHQERCREEIHSLLGDGASITWNHLDQMPYTTMCIKEALRLYPPVPGIGRELSTPVTFPDGRSLPKGIMVLLSIYGLHHNPKVW-PNPEVFDPFRFAPG---SAQHSHAFLPFSGGSRNCIG 459          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP4A4_RABIT (Cytochrome P450 4A4 OS=Oryctolagus cuniculus GN=CYP4A4 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20
Identity = 61/214 (28.50%), Postives = 106/214 (49.53%), Query Frame = 3
Query:   66 QADQEITNEVDRERKANGNSKNKTMMATAMPQEEQEKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVEL-GGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            Q   E T+ V ++RKA    + +        ++ + K   D L +++ A   + S+++D D+  E  +F F G  TT++ ++W    LA HP  Q   REE+  + G     T + + ++   +M + E+LRLYPP+ +  R+    V    G  +P+G  L + I  +H++  +W      F+P RF+     +A H   F+PF  G R C+G
Sbjct:  257 QLAHEHTDRVIQQRKAQLQQEGEL-------EKVRRKRRLDFLDVLLFAKMENGSSLSDQDLRAEVDTFMFEGHDTTASGVSWIFYALATHPEHQHRCREEIQGLLGDGASITWEHLDQMPYTTMCIKEALRLYPPVPSVTRQLSKPVTFPDGRSLPKGVILFLSIYGLHYNPKVW-QNPEVFDPFRFAPD---SAYHSHAFLPFSGGARNCIG 459          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP4X1_HUMAN (Cytochrome P450 4X1 OS=Homo sapiens GN=CYP4X1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.884e-20
Identity = 57/210 (27.14%), Postives = 102/210 (48.57%), Query Frame = 3
Query:   78 EITNEVDRERKANGNSKNKTMMATAMPQEEQEKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVEL-GGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            + T+ + +ERK       K++ A        ++  +D L +++ A   S S+ +D D+  E  +F  AG  T +  ++W    LA++P  Q   REEV  + G     T D + ++   +M + E+ RL P + +  R     +    G  +P G  +++ I  +HH+ A+W      F+P RFS+  +   +HP  ++PF  G R C+G
Sbjct:  256 QYTDTIIQERK-------KSLQAGVKQDNTPKRKYQDFLDIVLSAKDESGSSFSDIDVHSEVSTFLLAGHDTLAASISWILYCLALNPEHQERCREEVRGILGDGSSITWDQLGEMSYTTMCIKETCRLIPAVPSISRDLSKPLTFPDGCTLPAGITVVLSIWGLHHNPAVW-KNPKVFDPLRFSQENS-DQRHPYAYLPFSAGSRNCIG 456          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: C13A5_CAEEL (Putative cytochrome P450 CYP13A5 OS=Caenorhabditis elegans GN=cyp-13A5 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.884e-20
Identity = 57/174 (32.76%), Postives = 96/174 (55.17%), Query Frame = 3
Query:  192 LGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATI---RRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            LG      +     +T  +II +   F  AG  TT+  L++++ LLA HP  Q   +EEV R C + ++ T D ++KLK +  ++ E+LR+YP  +A+I   R+   +  + G +I +GT + +    +H+D  +WG +AN+F P R+  G         G++PFG+G R C+G
Sbjct:  297 LGFAKTEIAKVDKQLTFDEIIGQLFVFLLAGYDTTALSLSYSSYLLARHPEIQKKLQEEVDRECPNPEV-TFDQISKLKYMECVVKEALRMYP--LASIVHNRKCMKETNVLGVQIEKGTNVQVDTWTLHYDPKVWGEDANEFRPERWESG-DELFYAKGGYLPFGMGPRICIG 466          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: THAS_MOUSE (Thromboxane-A synthase OS=Mus musculus GN=Tbxas1 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.685e-20
Identity = 58/164 (35.37%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  216 SNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAK-LKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            +++S   T  +I+ +   F  AG +  +N L++ T LLA HP  Q    +EV    G    P    + + L  L M+++E+LR+YPP     R A  D E+ G +IP GT L I + A+HHD   W      F+P RF+   AR  + P  ++PFG G R+C+G
Sbjct:  320 TSTSKPFTVDEIVGQAFLFLIAGHEVITNTLSFITYLLATHPDCQERLLKEVDLFMGKHPAPEYHSLQEGLPYLDMVISETLRMYPPAFRFTREAAQDCEVLGQRIPAGTVLEIAVGALHHDPEHW-PNPETFDPERFT-AEARLQRRPFTYLPFGAGPRSCLG 481          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP136_MYCTU (Putative cytochrome P450 136 OS=Mycobacterium tuberculosis GN=cyp136 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.685e-20
Identity = 59/187 (31.55%), Postives = 94/187 (50.27%), Query Frame = 3
Query:  147 TAMPQEEQEKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLR-VCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            TA  +E +E    DLL ++ Q   +  +  +D DI+        A   T+++  T     LA HP WQ   R+E  R   G  D+   + + +L++L +++NES+RL  P+   +R+   D EL GY +P+GT ++      H    IW ++   F+P RF+E      +H   F PFG GV  C+G
Sbjct:  259 TARVKERREASGNDLLTVLCQTEDDDGNRFSDADIVNHMIFLMMAAHDTSTSTATTMAYQLAAHPEWQQRCRDESDRHGDGPLDI---ESLEQLESLDLVMNESIRLVTPVQWAMRQTVRDTELLGYYLPKGTNVIAYPGMNHRLPEIW-TDPLTFDPERFTEPRNEHKRHRYAFTPFGGGVHKCIG 441          
The following BLAST results are available for this feature:
BLAST of FC873558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 466
Match NameE-valueIdentityDescription
CP4AM_HUMAN2.641e-2028.97Cytochrome P450 4A22 OS=Homo sapiens GN=CYP4A22 PE... [more]
C356_FUNHE2.641e-2033.33Cytochrome P450 3A56 OS=Fundulus heteroclitus GN=c... [more]
C330_FUNHE2.641e-2033.33Cytochrome P450 3A30 OS=Fundulus heteroclitus GN=c... [more]
CYPD_BACSU4.506e-2033.49Probable bifunctional P-450/NADPH-P450 reductase 1... [more]
CP4AB_HUMAN4.506e-2028.97Cytochrome P450 4A11 OS=Homo sapiens GN=CYP4A11 PE... [more]
CP4A4_RABIT4.506e-2028.50Cytochrome P450 4A4 OS=Oryctolagus cuniculus GN=CY... [more]
CP4X1_HUMAN5.884e-2027.14Cytochrome P450 4X1 OS=Homo sapiens GN=CYP4X1 PE=2... [more]
C13A5_CAEEL5.884e-2032.76Putative cytochrome P450 CYP13A5 OS=Caenorhabditis... [more]
THAS_MOUSE7.685e-2035.37Thromboxane-A synthase OS=Mus musculus GN=Tbxas1 P... [more]
CP136_MYCTU7.685e-2031.55Putative cytochrome P450 136 OS=Mycobacterium tube... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BG01FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873558 ID=FC873558; Name=FC873558; organism=Citrus clementina; type=EST; length=704bp
AAAGTCTTCATCCCTGGCTACAGATTTTTGCCGACAAAAAGGAACATAAG
CTCATGGAAACTTGACAAGCAGATCAAGAGATCACTAACGAAGTTGATCG
AGAGAGAAAAGCGAATGGGAATAGCAAGAATAAGACGATGATGGCGACGG
CGATGCCGCAGGAGGAACAAGAAAAGGGACCAAAAGATTTGTTAGGGCTA
ATGATTCAAGCATCATCGAATTCCTCCTCCAACATAACAGATTATGACAT
AATTGAAGAGTGCAAGAGCTTCTTCTTTGCTGGCAAACAGACCACATCCA
ATCTGCTGACGTGGACAACCGTCCTTCTAGCTATGCACCCACACTGGCAG
GTGCTAGCACGTGAGGAGGTTCTAAGGGTGTGTGGATCACGTGACTTACC
CACCAGAGATGATGTTGCAAAGCTTAAGACCCTAAGCATGATACTAAATG
AATCCCTTCGATTGTATCCGCCAATAATCGCGACAATCAGACGGGCCAAG
GCCGACGTGGAGTTGGGTGGATACAAGATACCGCGTGGGACCGAGTTGCT
GATACCAATCCTGGCCGTTCATCACGACCAAGCAATTTGGGGGAGTGAGG
CAAACGATTTCAATCCAGCTAGATTCTCAGAGGGAGTGGCCCGGGCAGCG
AAGCATCCCGTGGGGTTCATACCATTCGGCCTTGGGGTCCGCACCTGCGT
TGGG
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