FC873558

Overview
NameFC873558
Unique NameFC873558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1236 contig Ccv1_Contig1236:3..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP4D2_DROME (Cytochrome P450 4d2 OS=Drosophila melanogaster GN=Cyp4d2 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 70/217 (32.26%), Postives = 111/217 (51.15%), Query Frame = 3
Query:   78 EITNEVDRERKAN--GNSKNKTMMATAMPQEEQ----EKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGS-RDLP-TRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            + T  + RER+     NSK  T      P+EE     +K    LL +++Q++ + +  ++D DI EE  +F F G  TT++ +++    ++ HP  Q   ++E+  V G  R  P T  D+ +LK +  ++ ESLRL+PP+    R    DVE+ G  IP GT   + I  +  D   + S  ++F P RF   V +   HP  +IPF  G R C+G
Sbjct:  245 DFTENIIRERRETLVNNSKETT------PEEEVNFLGQKRRMALLDVLLQSTIDGAP-LSDEDIREEVDTFMFEGHDTTTSAISFCLYEISRHPEVQQRLQQEIRDVLGEDRKSPVTLRDLGELKFMENVIKESLRLHPPVPMIGRWFAEDVEIRGKHIPAGTNFTMGIFVLLRDPEYFES-PDEFRPERFDADVPQI--HPYAYIPFSAGPRNCIG 451          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP3AR_ONCMY (Cytochrome P450 3A27 OS=Oncorhynchus mykiss GN=cyp3a27 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19
Identity = 59/181 (32.60%), Postives = 95/181 (52.49%), Query Frame = 3
Query:  186 DLLGLMIQASSNSSSN--------ITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            D L LMI +   S +         +TD++I+ +   F FAG +T+S+ +++    LA + H     +EE+  V  ++     + + ++  L  +LNESLRLYP      R AK  VE+ G  IP+   +L+P   +H D  IW S+  +F P RFS+   + +  P  ++PFG G R C+G
Sbjct:  271 DFLQLMIDSQKGSDTKTGEEQTKGLTDHEILSQAMIFIFAGYETSSSTMSFLAYNLATNHHVMTKLQEEIDTVFPNKAPIQYEALMQMDYLDCVLNESLRLYPIAPRLERVAKKTVEINGIVIPKDCIVLVPTWTLHRDPEIW-SDPEEFKPERFSK-ENKESIDPYTYMPFGAGPRNCIG 449          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP4AL_PIG (Taurochenodeoxycholic 6 alpha-hydroxylase OS=Sus scrofa GN=CYP4A21 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 53/180 (29.44%), Postives = 95/180 (52.78%), Query Frame = 3
Query:  168 QEKGPKDLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVEL-GGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            ++K   D L +++ A   + ++++D D+  E  +F  AG  +T++ ++W    LA +P  Q   REE+  + G     T D + ++   +M + E+LRLYPP+ +  R     +    G  +P G  L + I  +HH+  +W     +F+P+RF+ G   +A+H   F+PF  G R C+G
Sbjct:  278 KKKRHLDFLDILLFARMENGNSLSDTDVRAEVDTFMAAGHDSTASGISWVLYALASNPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVPSVGRELSKPITFPDGRSLPAGIILSLSIYGLHHNPQVW-PNPEEFDPSRFAPG---SARHSHAFMPFSGGSRNCIG 453          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP134_DROME (Probable cytochrome P450 313a4 OS=Drosophila melanogaster GN=Cyp313a4 PE=2 SV=4)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 54/157 (34.39%), Postives = 87/157 (55.41%), Query Frame = 3
Query:  246 DIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRV---CGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELG-GYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            ++ +E     F   +TT+N + +T +LLAM P +Q  A EE+  +    G  D+ +  D  ++  L +ILNES+R+ PP+    R+   D++L  G  +P+G ++ I I  +H  + IWG +A  FNP  F     +  KHP  +IPF  G+R C+G
Sbjct:  288 NVEDESNIIVFGAFETTANAVYYTLMLLAMFPEYQERAFEEIKTIFPNTGDFDV-SYADTQQMVYLDLILNESMRVIPPVPVVSRQTSQDLKLSNGIVVPKGVQIAIDIYHMHRSKKIWGPDAETFNPDHFLPHNIQ-DKHPYAYIPFTKGIRNCIG 442          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: C13A3_CAEEL (Putative cytochrome P450 CYP13A3 OS=Caenorhabditis elegans GN=cyp-13A3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 58/161 (36.02%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  231 NITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATI---RRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            ++T  +II +   F  AG  TT+  L++++ LLA HP  Q   +EEV R C   ++ T D ++KLK +  ++ E+LRLYP  +A+I   R+      + G KI  GT +      +H+D   WG  AN+F P R+  G  +A      ++PFGLG R C+G
Sbjct:  310 HLTFDEIIGQLFVFLLAGYDTTALSLSYSSYLLARHPEIQKKLQEEVDRECPDPEV-TFDQLSKLKYMECVIKETLRLYP--LASIVHNRKCMKSTTVLGMKIEEGTNVQADTWTLHYDPKFWGENANEFKPERWESGDEQAVAKG-AYLPFGLGPRICIG 466          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: C76B1_HELTU (7-ethoxycoumarin O-deethylase OS=Helianthus tuberosus GN=CYP76B1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 58/174 (33.33%), Postives = 83/174 (47.70%), Query Frame = 3
Query:  186 DLLGLMIQASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPI-IATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            D+L + ++   ++ +     +I       F AG  TTS  + W    L   PH    A+EE+ +V G   +   DDV +L  LS I+ E LRL+PP  +   R+    VEL GY IP GT + +   A+  D  +W  ++ +F P RF E       H    IPFG G R C G
Sbjct:  262 DVLDVCLKMMQDNPNEFNHTNIKALFLDLFVAGTDTTSITIEWAMTELLRKPHIMSKAKEELEKVIGKGSIVKEDDVLRLPYLSCIVKEVLRLHPPSPLLLPRKVVTQVELSGYTIPAGTLVFVNAWAIGRDPTVW-DDSLEFKPQRFLESRLDVRGHDFDLIPFGAGRRICPG 434          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: C340_ORYLA (Cytochrome P450 3A40 OS=Oryzias latipes GN=cyp3a40 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 58/187 (31.02%), Postives = 97/187 (51.87%), Query Frame = 3
Query:  159 QEEQEKGPKDLLGLMIQASSNSSSNI-----TDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            +  ++K   D L LMI +  N+ + +     +D++I+ +   F FAG +TTS+ LT+    LA +P      ++E+     ++       + +++ L  ++NESLRLYP      R AKA VE+ G  IP+   +++P   +H D  +W  E   F P RFS+   +    P  ++PFG G R C+G
Sbjct:  261 ENNKQKSRIDFLQLMIDSQKNNQNGLQDKGLSDHEILSQAMIFIFAGYETTSSSLTFLAYNLATNPEVMKKLQKEIDATFPNKAPVQYVPLMEMEYLDCVVNESLRLYPIAARLERVAKATVEVNGLVIPKDMVVMVPTWPLHRDPELW-PEPEKFKPERFSK-ENKDTFDPYTYMPFGAGPRNCIG 445          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: C75A1_PINTA (Cytochrome P450 750A1 OS=Pinus taeda GN=CYP750A1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.920e-19
Identity = 54/182 (29.67%), Postives = 97/182 (53.30%), Query Frame = 3
Query:  183 KDLLGLMIQASSNSSSN--ITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPI-IATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSE----GV-ARAAKHPVGFIPFGLGVRTCVG 704
            KD++ ++++ + N ++   +T   I       F AG +T++N+L W    L  HPH     ++E+  V G +      D+A +  L  ++ E+LRLYP + +A    +   V +GGY IP+ T +++ + A+  D ++WG++A++F P RF +    G+     +     +PFG G RTC G
Sbjct:  286 KDIIDVLLEMAKNDNTGAKVTREIIKAITYELFSAGMETSANVLEWAMSELLRHPHAMKKLQQEIESVVGQQGTVKESDLASIVYLHCVVKETLRLYPSLPLALPHESLEAVTVGGYYIPKKTMVIMNLWAIGRDPSVWGADASEFKPERFMQMEENGIDLSGGQSDFRMLPFGAGRRTCPG 467          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: C13A7_CAEEL (Putative cytochrome P450 CYP13A7 OS=Caenorhabditis elegans GN=cyp-13A7 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.920e-19
Identity = 56/161 (34.78%), Postives = 91/161 (56.52%), Query Frame = 3
Query:  231 NITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATI---RRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            ++T  +II +   F  AG  TT+  L++++ LLA HP  Q   +EEV R C   ++ T D ++KLK L  ++ E+LRLYP  +A++   R+      + G +I  GT + +   ++HHD  +WG + N+F P R+  G         G++PFG+G R C+G
Sbjct:  310 HLTFDEIIGQLFVFLLAGYDTTALSLSYSSYLLATHPEIQKKLQEEVDRECPDPEV-TFDQLSKLKYLECVVKEALRLYP--LASLVHNRKCLKTTNVLGMEIEAGTNINVDTWSLHHDPKVWGDDVNEFKPERWESG-DELFFAKGGYLPFGMGPRICIG 466          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: C76A1_SOLME (Cytochrome P450 76A1 (Fragment) OS=Solanum melongena GN=CYP76A1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.981e-19
Identity = 61/190 (32.11%), Postives = 91/190 (47.89%), Query Frame = 3
Query:  162 EEQEKGPK-----DLLGLMIQ---ASSNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATI-RRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            EE++KG K     DLL ++I    +  +    +++ +I       F AG +TTS+ + W    L  HP      + E+L+V G        D+  L  +  +L E LRL+PP+   I R+A  D +  GY IP+GT++L+   A+  D   W +   +F P RF E            IPFG G R CVG
Sbjct:  224 EERKKGEKNRSIKDLLDVLIDFEGSGKDEPDKLSEDEITVIILEMFLAGTETTSSSVEWALTELLRHPQAMAKVKLEILQVIGPNKKFEECDIDSLPYMQAVLKEQLRLHPPLPLLIPRKAIQDTKFMGYDIPKGTQVLVNAWAIGRDPEYWDNPF-EFKPERFLESKVDVKGQNYELIPFGAGRRMCVG 412          
The following BLAST results are available for this feature:
BLAST of FC873558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 466
Match NameE-valueIdentityDescription
CP4D2_DROME1.004e-1932.26Cytochrome P450 4d2 OS=Drosophila melanogaster GN=... [more]
CP3AR_ONCMY1.311e-1932.60Cytochrome P450 3A27 OS=Oncorhynchus mykiss GN=cyp... [more]
CP4AL_PIG1.712e-1929.44Taurochenodeoxycholic 6 alpha-hydroxylase OS=Sus s... [more]
CP134_DROME1.712e-1934.39Probable cytochrome P450 313a4 OS=Drosophila melan... [more]
C13A3_CAEEL1.712e-1936.02Putative cytochrome P450 CYP13A3 OS=Caenorhabditis... [more]
C76B1_HELTU2.236e-1933.337-ethoxycoumarin O-deethylase OS=Helianthus tubero... [more]
C340_ORYLA2.236e-1931.02Cytochrome P450 3A40 OS=Oryzias latipes GN=cyp3a40... [more]
C75A1_PINTA2.920e-1929.67Cytochrome P450 750A1 OS=Pinus taeda GN=CYP750A1 P... [more]
C13A7_CAEEL2.920e-1934.78Putative cytochrome P450 CYP13A7 OS=Caenorhabditis... [more]
C76A1_SOLME4.981e-1932.11Cytochrome P450 76A1 (Fragment) OS=Solanum melonge... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3BG01FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873558 ID=FC873558; Name=FC873558; organism=Citrus clementina; type=EST; length=704bp
AAAGTCTTCATCCCTGGCTACAGATTTTTGCCGACAAAAAGGAACATAAG
CTCATGGAAACTTGACAAGCAGATCAAGAGATCACTAACGAAGTTGATCG
AGAGAGAAAAGCGAATGGGAATAGCAAGAATAAGACGATGATGGCGACGG
CGATGCCGCAGGAGGAACAAGAAAAGGGACCAAAAGATTTGTTAGGGCTA
ATGATTCAAGCATCATCGAATTCCTCCTCCAACATAACAGATTATGACAT
AATTGAAGAGTGCAAGAGCTTCTTCTTTGCTGGCAAACAGACCACATCCA
ATCTGCTGACGTGGACAACCGTCCTTCTAGCTATGCACCCACACTGGCAG
GTGCTAGCACGTGAGGAGGTTCTAAGGGTGTGTGGATCACGTGACTTACC
CACCAGAGATGATGTTGCAAAGCTTAAGACCCTAAGCATGATACTAAATG
AATCCCTTCGATTGTATCCGCCAATAATCGCGACAATCAGACGGGCCAAG
GCCGACGTGGAGTTGGGTGGATACAAGATACCGCGTGGGACCGAGTTGCT
GATACCAATCCTGGCCGTTCATCACGACCAAGCAATTTGGGGGAGTGAGG
CAAACGATTTCAATCCAGCTAGATTCTCAGAGGGAGTGGCCCGGGCAGCG
AAGCATCCCGTGGGGTTCATACCATTCGGCCTTGGGGTCCGCACCTGCGT
TGGG
back to top