FC873573

Overview
NameFC873573
Unique NameFC873573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1239 contig Ccv1_Contig1239:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 2 
Query:   32 KTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            KTLTGK I + ++  D I  ++ +++++EGIPP  + LI++GK+L D +T   Y+I+  S LHLVL L GG
Sbjct:    6 KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 2 
Query:   32 KTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            KTLTGK I + ++  D I  ++ +++++EGIPP  + LI++GK+L D +T   Y+I+  S LHLVL L GG
Sbjct:    6 KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76
The following BLAST results are available for this feature:
BLAST of FC873573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
RUB1_ORYSJ2.038e-1145.07NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH2.038e-1145.07NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BH06FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873573 ID=FC873573; Name=FC873573; organism=Citrus clementina; type=EST; length=671bp
AAAAGGGGGAAATTAAATGCAGATCTTCGAGAAAACCCTAACGGGGAAGA
CCATTAACCTCTAGGTCCAATCCCGCGACCCCATCCACCATGTCCAGGGC
AAGATCCAAGACCAGGAAGGTATTCCGCCGGACCACCGAACACTTATCTT
CTCTGGGAAGCGGCTTGAGGATGGCCGAACTCTATCCTATTACCATATCC
AAAAGGAGTCAACTCTGCATCTGGTTCTGAGGCTTCATGGTGGTATTATT
GAGCCTTCTTTGATGGCATTGGCAAGGAAGTATAACCAGGACAAGATGAT
CTGCCAAAAATGTTATGCGCGCCTGCCCCCCCGTGCTGTGAGCTGCGAGA
AGAAGAAATGTGGGCACAGCAACCAGCTGAGGCCTGAGAACAAGATCAAG
TATATATTCTGCATACAAATGCTACATTTTATACTGAATCATGATGTTTT
GCCTATAATATGTAGCATCTACTATTGCCTAGTGATAGTTGTCACTTATT
ACTTGATTTCTGTTTCCAGATGTTTCCAGGGTTGAGAGTATTTGTAGACT
GATTACTATCGCCTCTATGTGCCGTGACATTGAGCACTTTATTATAACTT
GCCTGAATCTACTATTTTCTTACACTGATGTTTGATCACCAATCAATTTT
TCATAAAACAAAAAAAAAAAA
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