FC873573

Overview
NameFC873573
Unique NameFC873573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1239 contig Ccv1_Contig1239:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 2 
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V+  D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTLS Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 2 
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V+  D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTLS Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 2 
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V+  D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTLS Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 2 
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V+  D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTLS Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 2 
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V+  D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTLS Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 2 
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V+S D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTL+ Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.042e-23
Identity = 55/76 (72.37%), Postives = 64/76 (84.21%), Query Frame = 2 
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V+  D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTLS Y+IQKESTLHLVLR+ GG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRMRGG 76
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 2 
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V+  D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTLS Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.320e-23
Identity = 55/76 (72.37%), Postives = 64/76 (84.21%), Query Frame = 2 
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V+  D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTL+ Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 55/76 (72.37%), Postives = 64/76 (84.21%), Query Frame = 2 
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V+  D I +V+ KIQD+EGIPPD + LIF+GK+LE+GRTLS Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of FC873573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
UBIQ_CERCA6.106e-2473.68Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]
UBIQ_CAVPO6.106e-2473.68Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]
UBIQ_CANFA6.106e-2473.68Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR6.106e-2473.68Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_BOVIN6.106e-2473.68Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_ACACA6.106e-2473.68Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_SHEEP1.042e-2372.37Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2[more]
UBIQ_PHYIN1.360e-2373.68Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]
UBIQ_EUPEU2.320e-2372.37Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_LEIMA3.031e-2372.37Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BH06FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873573 ID=FC873573; Name=FC873573; organism=Citrus clementina; type=EST; length=671bp
AAAAGGGGGAAATTAAATGCAGATCTTCGAGAAAACCCTAACGGGGAAGA
CCATTAACCTCTAGGTCCAATCCCGCGACCCCATCCACCATGTCCAGGGC
AAGATCCAAGACCAGGAAGGTATTCCGCCGGACCACCGAACACTTATCTT
CTCTGGGAAGCGGCTTGAGGATGGCCGAACTCTATCCTATTACCATATCC
AAAAGGAGTCAACTCTGCATCTGGTTCTGAGGCTTCATGGTGGTATTATT
GAGCCTTCTTTGATGGCATTGGCAAGGAAGTATAACCAGGACAAGATGAT
CTGCCAAAAATGTTATGCGCGCCTGCCCCCCCGTGCTGTGAGCTGCGAGA
AGAAGAAATGTGGGCACAGCAACCAGCTGAGGCCTGAGAACAAGATCAAG
TATATATTCTGCATACAAATGCTACATTTTATACTGAATCATGATGTTTT
GCCTATAATATGTAGCATCTACTATTGCCTAGTGATAGTTGTCACTTATT
ACTTGATTTCTGTTTCCAGATGTTTCCAGGGTTGAGAGTATTTGTAGACT
GATTACTATCGCCTCTATGTGCCGTGACATTGAGCACTTTATTATAACTT
GCCTGAATCTACTATTTTCTTACACTGATGTTTGATCACCAATCAATTTT
TCATAAAACAAAAAAAAAAAA
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