FC873573

Overview
NameFC873573
Unique NameFC873573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1239 contig Ccv1_Contig1239:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.958e-23
Identity = 54/76 (71.05%), Postives = 65/76 (85.53%), Query Frame = 2
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI L V++ D I +V+ KIQD+EGIPPD + LIF+GK+LE+GRTL+ Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.749e-22
Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = 2
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTG TI L V+  D I +V+ KIQD+EGIPPD + LIF+ K+LE+GRTLS Y+IQKESTLHLVLRL GG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_NICSY (60S ribosomal protein L40 OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.839e-20
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 2
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSLMALARKYNQDKMIC+KCYARL PRAV+C +KKCGHSNQLRP+ KIK
Sbjct:    1 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQLRPKKKIK 52          
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_ORYSJ (60S ribosomal protein L40 OS=Oryza sativa subsp. japonica GN=Ub-CEP52-1 PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.136e-20
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSL ALARKYNQDKMIC+KCYARL PRAV+C KKKCGHSNQLRP+ KIK
Sbjct:    1 IIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_ARATH (60S ribosomal protein L40 OS=Arabidopsis thaliana GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.136e-20
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSLM LARKYNQDKMIC+KCYARL PRAV+C KKKCGHSNQLRP+ KIK
Sbjct:    1 IIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_BRARA (60S ribosomal protein L40 OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.987e-20
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSLMALARKYNQ KMIC+KCYARL PRAV+C KKKCGHSNQLRP+ KIK
Sbjct:    1 IIEPSLMALARKYNQAKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.248e-18
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 2
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI +  +  D +  V+ KI D+EG+P D + LI++GK+LED +TL+ Y+IQKESTLH+VLRL GG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_CHLRE (60S ribosomal protein L40 OS=Chlamydomonas reinhardtii GN=UBI1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.539e-18
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 2
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSL ALARKYNQ+KMIC+KCYARL PRA +C KK CGH+NQLRP+ K+K
Sbjct:    1 IIEPSLQALARKYNQEKMICRKCYARLHPRAKNCRKKSCGHTNQLRPKKKLK 52          
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_NEUCR (60S ribosomal protein L40 OS=Neurospora crassa GN=ubi-1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 2
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSL ALA K+N DKMIC+KCYARLPPRA +C K+KCGH+NQLRP+ K+K
Sbjct:    1 IIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 52          
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244
            MQIF KTLTGKTI    +  + +  ++ KI D+EG+P D + LIF+GK+LED +T++ Y+IQKESTLH+VLRL GG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
The following BLAST results are available for this feature:
BLAST of FC873573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
UBIQ_TRYBB3.958e-2371.05Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_LEITA9.749e-2269.74Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
RL40_NICSY1.839e-2086.5460S ribosomal protein L40 OS=Nicotiana sylvestris ... [more]
RL40_ORYSJ3.136e-2086.5460S ribosomal protein L40 OS=Oryza sativa subsp. j... [more]
RL40_ARATH3.136e-2086.5460S ribosomal protein L40 OS=Arabidopsis thaliana ... [more]
RL40_BRARA6.987e-2086.5460S ribosomal protein L40 OS=Brassica rapa PE=3 SV... [more]
UBIL_NPVOP2.248e-1859.21Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
RL40_CHLRE6.539e-1876.9260S ribosomal protein L40 OS=Chlamydomonas reinhar... [more]
RL40_NEUCR1.115e-1775.0060S ribosomal protein L40 OS=Neurospora crassa GN=... [more]
UBIL_NPVAC1.903e-1756.58Ubiquitin-like protein OS=Autographa californica n... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BH06FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873573 ID=FC873573; Name=FC873573; organism=Citrus clementina; type=EST; length=671bp
AAAAGGGGGAAATTAAATGCAGATCTTCGAGAAAACCCTAACGGGGAAGA
CCATTAACCTCTAGGTCCAATCCCGCGACCCCATCCACCATGTCCAGGGC
AAGATCCAAGACCAGGAAGGTATTCCGCCGGACCACCGAACACTTATCTT
CTCTGGGAAGCGGCTTGAGGATGGCCGAACTCTATCCTATTACCATATCC
AAAAGGAGTCAACTCTGCATCTGGTTCTGAGGCTTCATGGTGGTATTATT
GAGCCTTCTTTGATGGCATTGGCAAGGAAGTATAACCAGGACAAGATGAT
CTGCCAAAAATGTTATGCGCGCCTGCCCCCCCGTGCTGTGAGCTGCGAGA
AGAAGAAATGTGGGCACAGCAACCAGCTGAGGCCTGAGAACAAGATCAAG
TATATATTCTGCATACAAATGCTACATTTTATACTGAATCATGATGTTTT
GCCTATAATATGTAGCATCTACTATTGCCTAGTGATAGTTGTCACTTATT
ACTTGATTTCTGTTTCCAGATGTTTCCAGGGTTGAGAGTATTTGTAGACT
GATTACTATCGCCTCTATGTGCCGTGACATTGAGCACTTTATTATAACTT
GCCTGAATCTACTATTTTCTTACACTGATGTTTGATCACCAATCAATTTT
TCATAAAACAAAAAAAAAAAA
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