FC873573
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.958e-23 Identity = 54/76 (71.05%), Postives = 65/76 (85.53%), Query Frame = 2 Query: 17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244 MQIF KTLTGKTI L V++ D I +V+ KIQD+EGIPPD + LIF+GK+LE+GRTL+ Y+IQKESTLHLVLRL GG Sbjct: 1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 9.749e-22 Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = 2 Query: 17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244 MQIF KTLTG TI L V+ D I +V+ KIQD+EGIPPD + LIF+ K+LE+GRTLS Y+IQKESTLHLVLRL GG Sbjct: 1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_NICSY (60S ribosomal protein L40 OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.839e-20 Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 2 Query: 245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400 IIEPSLMALARKYNQDKMIC+KCYARL PRAV+C +KKCGHSNQLRP+ KIK Sbjct: 1 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQLRPKKKIK 52
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_ORYSJ (60S ribosomal protein L40 OS=Oryza sativa subsp. japonica GN=Ub-CEP52-1 PE=3 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 3.136e-20 Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2 Query: 245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400 IIEPSL ALARKYNQDKMIC+KCYARL PRAV+C KKKCGHSNQLRP+ KIK Sbjct: 1 IIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_ARATH (60S ribosomal protein L40 OS=Arabidopsis thaliana GN=UBQ1 PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.136e-20 Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2 Query: 245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400 IIEPSLM LARKYNQDKMIC+KCYARL PRAV+C KKKCGHSNQLRP+ KIK Sbjct: 1 IIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_BRARA (60S ribosomal protein L40 OS=Brassica rapa PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 6.987e-20 Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2 Query: 245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400 IIEPSLMALARKYNQ KMIC+KCYARL PRAV+C KKKCGHSNQLRP+ KIK Sbjct: 1 IIEPSLMALARKYNQAKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.248e-18 Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 2 Query: 17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244 MQIF KTLTGKTI + + D + V+ KI D+EG+P D + LI++GK+LED +TL+ Y+IQKESTLH+VLRL GG Sbjct: 1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_CHLRE (60S ribosomal protein L40 OS=Chlamydomonas reinhardtii GN=UBI1 PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.539e-18 Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 2 Query: 245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400 IIEPSL ALARKYNQ+KMIC+KCYARL PRA +C KK CGH+NQLRP+ K+K Sbjct: 1 IIEPSLQALARKYNQEKMICRKCYARLHPRAKNCRKKSCGHTNQLRPKKKLK 52
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_NEUCR (60S ribosomal protein L40 OS=Neurospora crassa GN=ubi-1 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17 Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 2 Query: 245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400 IIEPSL ALA K+N DKMIC+KCYARLPPRA +C K+KCGH+NQLRP+ K+K Sbjct: 1 IIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 52
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17 Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2 Query: 17 MQIFEKTLTGKTINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRLHGG 244 MQIF KTLTGKTI + + + ++ KI D+EG+P D + LIF+GK+LED +T++ Y+IQKESTLH+VLRL GG Sbjct: 1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76 The following BLAST results are available for this feature:
BLAST of FC873573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 122
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873573 ID=FC873573; Name=FC873573; organism=Citrus clementina; type=EST; length=671bpback to top |