FC873573

Overview
NameFC873573
Unique NameFC873573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_SCHPO (60S ribosomal protein L40 OS=Schizosaccharomyces pombe GN=ubi1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 2 
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSL ALA KYN +K IC+KCYARLPPRA +C KKKCGH+NQLRP+ K+K
Sbjct:    1 IIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 52
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_YEAST (60S ribosomal protein L40 OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.485e-17
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 2 
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSL ALA KYN DK +C+KCYARLPPRA +C K+KCGH+NQLRP+ K+K
Sbjct:    1 IIEPSLKALASKYNCDKSVCRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 52
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_SHEEP (60S ribosomal protein L40 OS=Ovis aries GN=UBA52 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 2 
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSL  LA+KYN DKMIC+KCYARL PRAV+C KKKCGH+N LRP+ K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_RAT (60S ribosomal protein L40 OS=Rattus norvegicus GN=Uba52 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 2 
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSL  LA+KYN DKMIC+KCYARL PRAV+C KKKCGH+N LRP+ K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_PONAB (60S ribosomal protein L40 OS=Pongo abelii GN=UBA52 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 2 
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSL  LA+KYN DKMIC+KCYARL PRAV+C KKKCGH+N LRP+ K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_PIG (60S ribosomal protein L40 OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 2 
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSL  LA+KYN DKMIC+KCYARL PRAV+C KKKCGH+N LRP+ K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_OPHHA (60S ribosomal protein L40 OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 2 
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSL  LA+KYN DKMIC+KCYARL PRAV+C KKKCGH+N LRP+ K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_MOUSE (60S ribosomal protein L40 OS=Mus musculus GN=Uba52 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 2 
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSL  LA+KYN DKMIC+KCYARL PRAV+C KKKCGH+N LRP+ K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_MACFA (60S ribosomal protein L40 OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 2 
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSL  LA+KYN DKMIC+KCYARL PRAV+C KKKCGH+N LRP+ K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_HUMAN (60S ribosomal protein L40 OS=Homo sapiens GN=UBA52 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 2 
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSL  LA+KYN DKMIC+KCYARL PRAV+C KKKCGH+N LRP+ K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
The following BLAST results are available for this feature:
BLAST of FC873573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
RL40_SCHPO1.903e-1775.0060S ribosomal protein L40 OS=Schizosaccharomyces p... [more]
RL40_YEAST2.485e-1773.0860S ribosomal protein L40 OS=Saccharomyces cerevis... [more]
RL40_SHEEP4.239e-1775.0060S ribosomal protein L40 OS=Ovis aries GN=UBA52 P... [more]
RL40_RAT4.239e-1775.0060S ribosomal protein L40 OS=Rattus norvegicus GN=... [more]
RL40_PONAB4.239e-1775.0060S ribosomal protein L40 OS=Pongo abelii GN=UBA52... [more]
RL40_PIG4.239e-1775.0060S ribosomal protein L40 OS=Sus scrofa GN=UBA52 P... [more]
RL40_OPHHA4.239e-1775.0060S ribosomal protein L40 OS=Ophiophagus hannah PE... [more]
RL40_MOUSE4.239e-1775.0060S ribosomal protein L40 OS=Mus musculus GN=Uba52... [more]
RL40_MACFA4.239e-1775.0060S ribosomal protein L40 OS=Macaca fascicularis G... [more]
RL40_HUMAN4.239e-1775.0060S ribosomal protein L40 OS=Homo sapiens GN=UBA52... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BH06FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873573 ID=FC873573; Name=FC873573; organism=Citrus clementina; type=EST; length=671bp
AAAAGGGGGAAATTAAATGCAGATCTTCGAGAAAACCCTAACGGGGAAGA
CCATTAACCTCTAGGTCCAATCCCGCGACCCCATCCACCATGTCCAGGGC
AAGATCCAAGACCAGGAAGGTATTCCGCCGGACCACCGAACACTTATCTT
CTCTGGGAAGCGGCTTGAGGATGGCCGAACTCTATCCTATTACCATATCC
AAAAGGAGTCAACTCTGCATCTGGTTCTGAGGCTTCATGGTGGTATTATT
GAGCCTTCTTTGATGGCATTGGCAAGGAAGTATAACCAGGACAAGATGAT
CTGCCAAAAATGTTATGCGCGCCTGCCCCCCCGTGCTGTGAGCTGCGAGA
AGAAGAAATGTGGGCACAGCAACCAGCTGAGGCCTGAGAACAAGATCAAG
TATATATTCTGCATACAAATGCTACATTTTATACTGAATCATGATGTTTT
GCCTATAATATGTAGCATCTACTATTGCCTAGTGATAGTTGTCACTTATT
ACTTGATTTCTGTTTCCAGATGTTTCCAGGGTTGAGAGTATTTGTAGACT
GATTACTATCGCCTCTATGTGCCGTGACATTGAGCACTTTATTATAACTT
GCCTGAATCTACTATTTTCTTACACTGATGTTTGATCACCAATCAATTTT
TCATAAAACAAAAAAAAAAAA
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