FC873573

Overview
NameFC873573
Unique NameFC873573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1239 contig Ccv1_Contig1239:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_FELCA (60S ribosomal protein L40 OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 2
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSL  LA+KYN DKMIC+KCYARL PRAV+C KKKCGH+N LRP+ K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_CHICK (60S ribosomal protein L40 OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 2
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSL  LA+KYN DKMIC+KCYARL PRAV+C KKKCGH+N LRP+ K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_CANFA (60S ribosomal protein L40 OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 2
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSL  LA+KYN DKMIC+KCYARL PRAV+C KKKCGH+N LRP+ K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_BOVIN (60S ribosomal protein L40 OS=Bos taurus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 2
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSL  LA+KYN DKMIC+KCYARL PRAV+C KKKCGH+N LRP+ K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 2
Query:   50 TINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRL 235
            TI L V+  D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTLS Y+IQKESTLHLVLRL
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 62          
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_ACACA (60S ribosomal protein L40 OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.233e-16
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            +IEPSL  LARKYN DK++C+KCYARL PRAV+C KKKCGHSN  RP+ K+K
Sbjct:    1 VIEPSLQVLARKYNCDKVVCRKCYARLHPRAVNCRKKKCGHSNHWRPKKKLK 52          
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_DROME (60S ribosomal protein L40 OS=Drosophila melanogaster GN=RpL40 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSL  LA+KYN DKMIC+KCYARL PRA +C KKKCGH+N LRP+ K+K
Sbjct:    1 IIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK 52          
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_DICDI (60S ribosomal protein L40 OS=Dictyostelium discoideum GN=ubqB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.747e-16
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:  248 IEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKI 397
            IEPSL+ LARKY  DKMIC+KCYARL PRAV+C KKKCGHSN LRP+ K+
Sbjct:    1 IEPSLVILARKYKCDKMICRKCYARLHPRAVNCRKKKCGHSNNLRPKKKL 50          
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_CRYNE (60S ribosomal protein L40 OS=Cryptococcus neoformans GN=UBI1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSL ALA KYN +K IC+KCYARLPPRA +C K+KCGHS+Q+RP+  +K
Sbjct:    1 IIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKRKCGHSSQIRPKKALK 52          
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_EIMBO (60S ribosomal protein L40 OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 2
Query:  245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400
            IIEPSL  LA KYN +K IC+KCYARLPPRA +C KKKCGH++QLRP+ K K
Sbjct:    1 IIEPSLALLASKYNCEKKICRKCYARLPPRATNCRKKKCGHTSQLRPKKKPK 52          
The following BLAST results are available for this feature:
BLAST of FC873573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
RL40_FELCA4.239e-1775.0060S ribosomal protein L40 OS=Felis catus GN=UBA52 ... [more]
RL40_CHICK4.239e-1775.0060S ribosomal protein L40 OS=Gallus gallus GN=UBA5... [more]
RL40_CANFA4.239e-1775.0060S ribosomal protein L40 OS=Canis familiaris GN=U... [more]
RL40_BOVIN4.239e-1775.0060S ribosomal protein L40 OS=Bos taurus GN=UBA52 P... [more]
UBIQ_LUMTE5.536e-1770.97Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
RL40_ACACA1.233e-1671.1560S ribosomal protein L40 OS=Acanthamoeba castella... [more]
RL40_DROME1.611e-1673.0860S ribosomal protein L40 OS=Drosophila melanogast... [more]
RL40_DICDI2.747e-1676.0060S ribosomal protein L40 OS=Dictyostelium discoid... [more]
RL40_CRYNE6.121e-1669.2360S ribosomal protein L40 OS=Cryptococcus neoforma... [more]
RL40_EIMBO1.364e-1571.1560S ribosomal protein L40 OS=Eimeria bovis PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BH06FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873573 ID=FC873573; Name=FC873573; organism=Citrus clementina; type=EST; length=671bp
AAAAGGGGGAAATTAAATGCAGATCTTCGAGAAAACCCTAACGGGGAAGA
CCATTAACCTCTAGGTCCAATCCCGCGACCCCATCCACCATGTCCAGGGC
AAGATCCAAGACCAGGAAGGTATTCCGCCGGACCACCGAACACTTATCTT
CTCTGGGAAGCGGCTTGAGGATGGCCGAACTCTATCCTATTACCATATCC
AAAAGGAGTCAACTCTGCATCTGGTTCTGAGGCTTCATGGTGGTATTATT
GAGCCTTCTTTGATGGCATTGGCAAGGAAGTATAACCAGGACAAGATGAT
CTGCCAAAAATGTTATGCGCGCCTGCCCCCCCGTGCTGTGAGCTGCGAGA
AGAAGAAATGTGGGCACAGCAACCAGCTGAGGCCTGAGAACAAGATCAAG
TATATATTCTGCATACAAATGCTACATTTTATACTGAATCATGATGTTTT
GCCTATAATATGTAGCATCTACTATTGCCTAGTGATAGTTGTCACTTATT
ACTTGATTTCTGTTTCCAGATGTTTCCAGGGTTGAGAGTATTTGTAGACT
GATTACTATCGCCTCTATGTGCCGTGACATTGAGCACTTTATTATAACTT
GCCTGAATCTACTATTTTCTTACACTGATGTTTGATCACCAATCAATTTT
TCATAAAACAAAAAAAAAAAA
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