FC873573
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_FELCA (60S ribosomal protein L40 OS=Felis catus GN=UBA52 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17 Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 2 Query: 245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400 IIEPSL LA+KYN DKMIC+KCYARL PRAV+C KKKCGH+N LRP+ K+K Sbjct: 1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_CHICK (60S ribosomal protein L40 OS=Gallus gallus GN=UBA52 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17 Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 2 Query: 245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400 IIEPSL LA+KYN DKMIC+KCYARL PRAV+C KKKCGH+N LRP+ K+K Sbjct: 1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_CANFA (60S ribosomal protein L40 OS=Canis familiaris GN=UBA52 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17 Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 2 Query: 245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400 IIEPSL LA+KYN DKMIC+KCYARL PRAV+C KKKCGH+N LRP+ K+K Sbjct: 1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_BOVIN (60S ribosomal protein L40 OS=Bos taurus GN=UBA52 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17 Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 2 Query: 245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400 IIEPSL LA+KYN DKMIC+KCYARL PRAV+C KKKCGH+N LRP+ K+K Sbjct: 1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17 Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 2 Query: 50 TINL*VQSRDPIHHVQGKIQDQEGIPPDHRTLIFSGKRLEDGRTLSYYHIQKESTLHLVLRL 235 TI L V+ D I +V+ KIQD+EGIPPD + LIF+GK+LEDGRTLS Y+IQKESTLHLVLRL Sbjct: 1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 62
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_ACACA (60S ribosomal protein L40 OS=Acanthamoeba castellanii PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.233e-16 Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 2 Query: 245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400 +IEPSL LARKYN DK++C+KCYARL PRAV+C KKKCGHSN RP+ K+K Sbjct: 1 VIEPSLQVLARKYNCDKVVCRKCYARLHPRAVNCRKKKCGHSNHWRPKKKLK 52
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_DROME (60S ribosomal protein L40 OS=Drosophila melanogaster GN=RpL40 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16 Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 2 Query: 245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400 IIEPSL LA+KYN DKMIC+KCYARL PRA +C KKKCGH+N LRP+ K+K Sbjct: 1 IIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK 52
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_DICDI (60S ribosomal protein L40 OS=Dictyostelium discoideum GN=ubqB PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.747e-16 Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 2 Query: 248 IEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKI 397 IEPSL+ LARKY DKMIC+KCYARL PRAV+C KKKCGHSN LRP+ K+ Sbjct: 1 IEPSLVILARKYKCDKMICRKCYARLHPRAVNCRKKKCGHSNNLRPKKKL 50
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_CRYNE (60S ribosomal protein L40 OS=Cryptococcus neoformans GN=UBI1 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16 Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 2 Query: 245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400 IIEPSL ALA KYN +K IC+KCYARLPPRA +C K+KCGHS+Q+RP+ +K Sbjct: 1 IIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKRKCGHSSQIRPKKALK 52
BLAST of FC873573 vs. ExPASy Swiss-Prot
Match: RL40_EIMBO (60S ribosomal protein L40 OS=Eimeria bovis PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15 Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 2 Query: 245 IIEPSLMALARKYNQDKMICQKCYARLPPRAVSCEKKKCGHSNQLRPENKIK 400 IIEPSL LA KYN +K IC+KCYARLPPRA +C KKKCGH++QLRP+ K K Sbjct: 1 IIEPSLALLASKYNCEKKICRKCYARLPPRATNCRKKKCGHTSQLRPKKKPK 52 The following BLAST results are available for this feature:
BLAST of FC873573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 122
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873573 ID=FC873573; Name=FC873573; organism=Citrus clementina; type=EST; length=671bpback to top |