FC873624

Overview
NameFC873624
Unique NameFC873624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length427
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.219e-21
Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRV 311
            GQV  +LA CI FL+ GG   PP CC GV+++  ++RTT DR+A C CLK A   +RGI PN A  LP +CG+ IPYKIS ST+C+ +
Sbjct:    4 GQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.122e-21
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRVR 314
            GQV+++L+PCI + R  G  PP  CC+GV+ L GAA++T D+QAAC C+K A     G+    AAG+PS CG+ +PY IS S DCS++R
Sbjct:   30 GQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSA---AGGLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.061e-20
Identity = 48/88 (54.55%), Postives = 57/88 (64.77%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRV 311
            GQVT+ L PC  +L  GG  PP  CCNGVR LN AA+TTPDRQ AC CLK        I  N A  LP +CG+ I YKI+P+ DCS++
Sbjct:   29 GQVTSGLVPCFGYLAAGGPVPPA-CCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.061e-20
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRVR 314
            GQV+++L+PCI + R  G  PP  CC+GV+ L GAA++T D+QAAC C+K A     G+    AAG+PS CG+ +PY IS S DCS++R
Sbjct:   30 GQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSA---AGGLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.061e-20
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRVR 314
            GQV+++L+PCI + R  G  PP  CC+GV+ L GAA++T D+QAAC C+K A     G+    AAG+PS CG+ +PY IS S DCS++R
Sbjct:   30 GQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSA---AGGLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.385e-20
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRV 311
            GQV ++++PC+ + R GG  P   CC+GVRSLN AA TT DR+ AC CLK    +I G+    AA +PS+CG+ IPY ISPS DCS V
Sbjct:   31 GQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.385e-20
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRV 311
            GQV ++++PC+ + R GG  P   CC+GVRSLN AA TT DR+ AC CLK    +I G+    AA +PS+CG+ IPY ISPS DCS V
Sbjct:   30 GQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.385e-20
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRV 311
            GQV ++++PC+ + R GG  P   CC+GVRSLN AA TT DR+ AC CLK    +I G+    AA +PS+CG+ IPY ISPS DCS V
Sbjct:   31 GQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.809e-20
Identity = 43/88 (48.86%), Postives = 63/88 (71.59%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRV 311
            GQV+++L+PCI + R  G  PP  CC+GV+ L GAA++T D+QAAC CLK    +I+GI     +G+P +CG+ +P+ IS STDC++V
Sbjct:   30 GQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.363e-20
Identity = 49/89 (55.06%), Postives = 62/89 (69.66%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRVR 314
            G+V  +LAPC+ +L+ GG  P   CC GVR+LN AA TTPDRQAAC CLK A  +I  +  N AA LP +C + IPYKIS ST+C+ +R
Sbjct:   28 GRVDTALAPCLGYLQ-GGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
The following BLAST results are available for this feature:
BLAST of FC873624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
NLTP1_PHAAU6.219e-2153.41Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLT41_HORVU8.122e-2150.56Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLTP_GERHY1.061e-2054.55Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLT43_HORVU1.061e-2050.56Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLT42_HORVU1.061e-2050.56Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLTP2_ORYSI1.385e-2053.41Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2B_ORYSJ1.385e-2053.41Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLT2A_ORYSJ1.385e-2053.41Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP3_HORVU1.809e-2048.86Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTP_CICAR2.363e-2055.06Non-specific lipid-transfer protein OS=Cicer ariet... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CA06FM1 AbsDev Citrus clementina cDNA clone KN0AAI3CA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873624 ID=FC873624; Name=FC873624; organism=Citrus clementina; type=EST; length=427bp
TTTCTCGGTTCGGGCGACTGCCCCGGTGACTAATGCCATAACATAGCGGG
CAGGTGACAGCCTCCTTGGCTCCATGCATCCCTTTCCTGAGAACTGGAGG
GCGTTTTCCTCCACCGCCATGCTGTAACGGCGTCAGGTCTCTCAACGGCG
CCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCATCTGCTTGAAACGA
GCTTACTGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCC
TAGTCAATGTGGACTCCCAATTCCTTACAAGATCAGCCCCAGCACCGACT
GCTCGAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTAT
GATTGACTGATAAGAATAAATAACTAAAGAATATCTATGTTAATTTCTTT
GTCCGAACGAGTCTCCACTTGTATGAG
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