FC873624

Overview
NameFC873624
Unique NameFC873624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length427
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.363e-20
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRV 311
            G V   LAPCI +LR+ G  P   CCNGV++L  +A TT DR+ AC CL  A  +I G+   +AAGLP +CG+ IPYKISPST+C +V
Sbjct:    4 GDVATQLAPCINYLRSAGPLPVA-CCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.031e-20
Identity = 48/89 (53.93%), Postives = 58/89 (65.17%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRVR 314
            G VT  LAPCIP+L TGG  P   CC GV+ L  AA TT DRQAAC CLK A   I  + P  AA LP +C + IPYKIS +T+C+ ++
Sbjct:   30 GTVTGDLAPCIPYL-TGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.876e-20
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRV 311
            GQV +++ PC+ + R GG  P   CC+GVRSL  AA TT DR+ AC CLK A   I+G+    AA +PS+CG+ +PY IS S DCSRV
Sbjct:   29 GQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.876e-20
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRV 311
            GQV +++ PC+ + R GG  P   CC+GVRSL  AA TT DR+ AC CLK A   I+G+    AA +PS+CG+ +PY IS S DCSRV
Sbjct:   29 GQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.532e-19
Identity = 47/88 (53.41%), Postives = 59/88 (67.05%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRV 311
            G V++ LAPCI +L+ G       CC G+++LN AA TTPDR+ AC CLK A   I+GI    AAGLP  CG+ IPY ISPST+C+ V
Sbjct:   31 GMVSSKLAPCIGYLKGGPL--GGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.532e-19
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRV 311
            G V   +A CI +LR  G  P   CCNGV++L  +A TT DR+ AC CL  A  TI G+   +AAGLP++CG+ IPYKISPST+C +V
Sbjct:    4 GDVATQMASCINYLRGAGPLPAA-CCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.457e-19
Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRVR 314
            GQV + L  C+ + R GG  PP  CC GVR+LN  A+TTPDRQ AC CLK       G+   + AG+P +CG+ IPY I   TDC++VR
Sbjct:   26 GQVDSDLTSCLGYARKGGVIPPG-CCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.457e-19
Identity = 48/89 (53.93%), Postives = 56/89 (62.92%), Query Frame = 3
Query:   51 QVTASLAPCIPFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRVR 314
            QV +SL PC+ ++R     P PP  C G+RSL  AAR   DRQAAC C+K     I  I   VAAGLP QC + IPYKISPS DC RV+
Sbjct:   32 QVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.820e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPN--VAAGLPSQCGLPIPYKISPSTDCSRVR 314
            GQV  +L PCI ++  GG   P  CC GVRSL   A+TT DRQ+ C CLK+A   I     N  +AAGLP +CG+ IPYKISPSTDC  ++
Sbjct:   34 GQVVNNLTPCINYVANGGALNPS-CCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.212e-18
Identity = 44/89 (49.44%), Postives = 59/89 (66.29%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACIC-LKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRV 311
            GQV++++ PC+ + R  G  P   C +GVRSLN AARTT DR+AAC C LK A   + G+    A+ +P +CG+ +PY IS S DCSRV
Sbjct:    5 GQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
The following BLAST results are available for this feature:
BLAST of FC873624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
NLTP5_VITSX2.363e-2053.41Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLTP3_LENCU4.031e-2053.93Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP1_ORYSJ6.876e-2052.27Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI6.876e-2052.27Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP_SPIOL1.532e-1953.41Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP3_VITSX1.532e-1952.27Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
SCA_LILLO4.457e-1949.44Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP6_GOSHI4.457e-1953.93Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP3_PRUDU5.820e-1952.75Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP_ELECO2.212e-1849.44Non-specific lipid-transfer protein OS=Eleusine co... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3CA06FM1 AbsDev Citrus clementina cDNA clone KN0AAI3CA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873624 ID=FC873624; Name=FC873624; organism=Citrus clementina; type=EST; length=427bp
TTTCTCGGTTCGGGCGACTGCCCCGGTGACTAATGCCATAACATAGCGGG
CAGGTGACAGCCTCCTTGGCTCCATGCATCCCTTTCCTGAGAACTGGAGG
GCGTTTTCCTCCACCGCCATGCTGTAACGGCGTCAGGTCTCTCAACGGCG
CCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCATCTGCTTGAAACGA
GCTTACTGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCC
TAGTCAATGTGGACTCCCAATTCCTTACAAGATCAGCCCCAGCACCGACT
GCTCGAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTAT
GATTGACTGATAAGAATAAATAACTAAAGAATATCTATGTTAATTTCTTT
GTCCGAACGAGTCTCCACTTGTATGAG
back to top