FC873624

Overview
NameFC873624
Unique NameFC873624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length427
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.585e-16
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRV 311
            G VT+S+APC+ ++      P   CC+GVR+LNG A ++ DR+ AC CLK    + R +    AA +PS+CG+ + + IS S DCS++
Sbjct:   33 GDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.070e-16
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRV 311
            GQV+++L PC  + +  G  P   CC+GV+ L G AR+T D+QA C CLK             AAG+PS+CG+ +PY IS S DCS++
Sbjct:   30 GQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLKS---VAGAYNAGRAAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.612e-16
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRV 311
            G VT++LA C+ +L   G  P   CC GV+SL   A+TTPDR+  C CLK A   I+G+  ++ A LP+ CG+ IPY IS ST+C  +
Sbjct:   29 GTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.023e-16
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 3
Query:   54 VTASLAPCIPFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRVR 314
            VT +L PC+ +L+  G  PPP  CC GVRSL  AA+T  DR+ AC C+K A    + +   VAA L SQCG+ + Y +SP+ +C+ V+
Sbjct:    7 VTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.023e-16
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 3
Query:   54 VTASLAPCIPFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRVR 314
            VT +L PC+ +L+  G  PPP  CC GVRSL  AA+T  DR+ AC C+K A    + +   VAA L SQCG+ + Y +SP+ +C+ V+
Sbjct:    7 VTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.027e-15
Identity = 36/86 (41.86%), Postives = 57/86 (66.28%), Query Frame = 3
Query:   54 VTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRV 311
            VT +L PC+P+LR+GG+ P P CC G + L GA RT  DR+ AC C K A   ++ ++P++A+ LP +CG+     I+P+ +C+ +
Sbjct:   32 VTGNLTPCLPYLRSGGK-PTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQLK-VRPDMASSLPGKCGISTSIPINPNVNCNTI 115          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.989e-15
Identity = 45/90 (50.00%), Postives = 54/90 (60.00%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TI-RGIKPNVAAGLPSQCGLPIPYKISPSTDCSRVR 314
            G V  +LA CI +L  G       CCNGV +L   A TTPDRQ AC CL+ A   +  G+    AAGLPS C + IPYKIS ST+C+ VR
Sbjct:   30 GTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.904e-15
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 3
Query:   51 QVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRV 311
            QV   LA C+P+L+ GG  P P CCNG+ SL  AA    DRQ AC CLK    TI GI  + A  LP++CG+ I    S + DC+ +
Sbjct:   33 QVNMYLAQCLPYLKAGGN-PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.659e-15
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRV 311
            GQV +SLA CIPFL  G   P   CC GV++L   A T+ DR+AAC C+K A      IK + A+ LP +CG+ I   IS +T+C  +
Sbjct:    4 GQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.484e-14
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGG-RFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TI-RGIKPNVAAGLPSQCGLPIPY--KISPSTDCS 305
            G+V ++L PC  +L  GG   P P CCNGVR LNG   TT DR+ AC C+K A   +  G+  + AAG+P +CG+ IPY  +I  +T C+
Sbjct:   30 GEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
The following BLAST results are available for this feature:
BLAST of FC873624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
NLTP3_ORYSI1.585e-1642.05Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP8_HORVU2.070e-1644.32Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTPC_ARATH4.612e-1646.59Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP_AMACA6.023e-1645.45Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP6.023e-1645.45Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP1_HELAN1.027e-1541.86Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTP2_ARATH2.989e-1550.00Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTPB_ARATH3.904e-1545.98Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTPA_RICCO6.659e-1545.45Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP7_ARATH1.484e-1445.56Non-specific lipid-transfer protein 7 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CA06FM1 AbsDev Citrus clementina cDNA clone KN0AAI3CA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873624 ID=FC873624; Name=FC873624; organism=Citrus clementina; type=EST; length=427bp
TTTCTCGGTTCGGGCGACTGCCCCGGTGACTAATGCCATAACATAGCGGG
CAGGTGACAGCCTCCTTGGCTCCATGCATCCCTTTCCTGAGAACTGGAGG
GCGTTTTCCTCCACCGCCATGCTGTAACGGCGTCAGGTCTCTCAACGGCG
CCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCATCTGCTTGAAACGA
GCTTACTGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCC
TAGTCAATGTGGACTCCCAATTCCTTACAAGATCAGCCCCAGCACCGACT
GCTCGAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTAT
GATTGACTGATAAGAATAAATAACTAAAGAATATCTATGTTAATTTCTTT
GTCCGAACGAGTCTCCACTTGTATGAG
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