FC873625

Overview
NameFC873625
Unique NameFC873625
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15417 contig Ccv1_Contig15417:408..1063. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873625 vs. ExPASy Swiss-Prot
Match: EFG_GRAFK (Elongation factor G OS=Gramella forsetii (strain KT0803) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 51/158 (32.28%), Postives = 73/158 (46.20%), Query Frame = 3
Query:   93 VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPR---LLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHW 557
            VD+ KG +   E   SV  GF+ A K G LA     G   +   V L   + H      +          +  AK     +LEP+  VE+  PE+ +G I   LN++RG V     R G  +  IKA +P+ E FG+ +TLR  +SG+A     F H+
Sbjct:  532 VDVIKGGRIPKEFVPSVEKGFKEAMKNGPLA-----GFTMDSLKVTLKDGSFHPVDSDQLSFELAAKMGYKDAAKKAGAVILEPIMKVEVVTPEENMGDIVGDLNRRRGQVNNMSDRSGAKV--IKAEVPLSEMFGYVTTLRTLSSGRATSTMEFSHY 682          
BLAST of FC873625 vs. ExPASy Swiss-Prot
Match: EFG1_BURPS (Elongation factor G 1 OS=Burkholderia pseudomallei GN=fusA1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 55/184 (29.89%), Postives = 86/184 (46.74%), Query Frame = 3
Query:  105 KGVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-----DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHV--FEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQL 608
            KG ++L+EIK  V+          G +   K G LA   +  +   +      DV  + +A    G      A R        AKP LLEP+  VE++ PE  +G +   L+ +RG V   E++   G  L  ++A +P+ E FG+S++LR+AT G+A     F H+    S+  E    A Q+
Sbjct:  527 KGYEFLDEIKGGVIPREFIPAVNKGIEETLKSGVLAGYPVVDVKVHLTFGSYHDVDSNENAFRMAGSMAFKEAMR-------RAKPVLLEPMMAVEVETPEDFMGNVMGDLSSRRGIVQGMEDIAGGGGKL--VRAEVPLAEMFGYSTSLRSATQGRATYTMEFKHYAETPSNVSEAVINAKQV 701          
BLAST of FC873625 vs. ExPASy Swiss-Prot
Match: EFG1_BURMA (Elongation factor G 1 OS=Burkholderia mallei GN=fusA1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 55/184 (29.89%), Postives = 86/184 (46.74%), Query Frame = 3
Query:  105 KGVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVC-----DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHV--FEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQL 608
            KG ++L+EIK  V+          G +   K G LA   +  +   +      DV  + +A    G      A R        AKP LLEP+  VE++ PE  +G +   L+ +RG V   E++   G  L  ++A +P+ E FG+S++LR+AT G+A     F H+    S+  E    A Q+
Sbjct:  527 KGYEFLDEIKGGVIPREFIPAVNKGIEETLKSGVLAGYPVVDVKVHLTFGSYHDVDSNENAFRMAGSMAFKEAMR-------RAKPVLLEPMMAVEVETPEDFMGNVMGDLSSRRGIVQGMEDIAGGGGKL--VRAEVPLAEMFGYSTSLRSATQGRATYTMEFKHYAETPSNVSEAVINAKQV 701          
BLAST of FC873625 vs. ExPASy Swiss-Prot
Match: EFG_STRS7 (Elongation factor G OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.492e-11
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 3
Query:  309 TAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWD 560
            TA+P +LEP+ LV I APE  LG +   +  +RG V + M+  GT    ++AY+P+ E FG+++ LR+AT G+     VFDH++
Sbjct:  594 TAQPAILEPMMLVTITAPEDNLGDVMGHVTARRGRV-DGMEAHGTSQI-VRAYVPLAEMFGYATVLRSATQGRGTFMMVFDHYE 675          
BLAST of FC873625 vs. ExPASy Swiss-Prot
Match: EFG_STREM (Elongation factor G OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.492e-11
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 3
Query:  309 TAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWD 560
            TA+P +LEP+ LV I APE  LG +   +  +RG V + M+  GT    ++AY+P+ E FG+++ LR+AT G+     VFDH++
Sbjct:  594 TAQPAILEPMMLVTITAPEDNLGDVMGHVTARRGRV-DGMEAHGTSQI-VRAYVPLAEMFGYATVLRSATQGRGTFMMVFDHYE 675          
BLAST of FC873625 vs. ExPASy Swiss-Prot
Match: EFG_STRE4 (Elongation factor G OS=Streptococcus equi subsp. equi (strain 4047) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.492e-11
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 3
Query:  309 TAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWD 560
            TA+P +LEP+ LV I APE  LG +   +  +RG V + M+  GT    ++AY+P+ E FG+++ LR+AT G+     VFDH++
Sbjct:  594 TAQPAILEPMMLVTITAPEDNLGDVMGHVTARRGRV-DGMEAHGTSQI-VRAYVPLAEMFGYATVLRSATQGRGTFMMVFDHYE 675          
BLAST of FC873625 vs. ExPASy Swiss-Prot
Match: EFG_CHLP8 (Elongation factor G OS=Chlorobaculum parvum (strain NCIB 8327) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.492e-11
Identity = 49/155 (31.61%), Postives = 78/155 (50.32%), Query Frame = 3
Query:  105 KGVQYLNEIKD---------SVVAGFQWASKEGALAEENMRGICFEVCDVVLH----ADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQA 530
            KG ++++EIK          SV AG Q A K+G +A   M+ +   + D   H    ++   +  G +          +   A P LLEP+  VE+  PE+ LG +   L+ +RGH+    +R G     +KA +P+ E FG+S+TLR+ T G+A
Sbjct:  528 KGYEFVDEIKGGAIPKEYIPSVNAGIQQAMKDGVVAGFPMQDVKVALIDGKYHEVDSSEMAFKIAGSI------GFKGAAKKANPVLLEPIMKVEVITPEEYLGDVMGDLSGRRGHIEGMGERAGAQF--VKAKVPLSEMFGYSTTLRSMTQGRA 674          
BLAST of FC873625 vs. ExPASy Swiss-Prot
Match: EFG_CAMC5 (Elongation factor G OS=Campylobacter curvus (strain 525.92) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 48/168 (28.57%), Postives = 80/168 (47.62%), Query Frame = 3
Query:   93 VDMCKGVQYLNEIKDSVVA---------GFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIP---TARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWD 560
            ++   G +++N+IK  VV          G + A + G LA     G   E   V L+  + H      +     A          A P +LEP+  VE++ PE+ +G +   LN++RG V    +R G+ +  I A+ P+ + FG+S+ LR+ T G+A     FDH++
Sbjct:  516 LEPASGFEFVNDIKGGVVPKEYIPAVEKGCREALQNGVLA-----GYPVEDVKVTLYDGSYHEVDSSEMAFKLAASMGFKEGARKANPVILEPMMKVEVETPEEYMGDVIGDLNKRRGQVSSMDERNGSKI--ITAFCPLAQMFGYSTDLRSGTQGRATYSMEFDHYE 676          
BLAST of FC873625 vs. ExPASy Swiss-Prot
Match: EFG_BACTN (Elongation factor G OS=Bacteroides thetaiotaomicron GN=fusA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 49/188 (26.06%), Postives = 88/188 (46.81%), Query Frame = 3
Query:   30 DKDLAKKIWCFGPETIGPNMVVDMCKGVQ--YLNEIKDSVVAGFQWASKEGALAEENMRGI-----CFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSS 572
            D+D  +    F  E  G N+  +    VQ  + + +K+ V+AG+   S +  L + +   +      FE+C +  + +A  + G                   P L+EP+  +E+  PE+ +G +   LN++RG V E M+   +    +KA +P+ E FG+ + LR  TSG+A    V+ H   +S+
Sbjct:  521 DEDFKEGGLQFIDEVKGGNIPKEFIPSVQKGFTSAMKNGVLAGYPLDSMKVTLIDGSFHPVDSDQLSFEICAIQAYKNACAKAG-------------------PVLMEPIMKLEVVTPEENMGDVIGDLNKRRGQV-EGMESSRSGARIVKAMVPLAEMFGYVTALRTITSGRATSSMVYSHHAQVSN 688          
The following BLAST results are available for this feature:
BLAST of FC873625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
EFG_GRAFK5.737e-1132.28Elongation factor G OS=Gramella forsetii (strain K... [more]
EFG1_BURPS5.737e-1129.89Elongation factor G 1 OS=Burkholderia pseudomallei... [more]
EFG1_BURMA5.737e-1129.89Elongation factor G 1 OS=Burkholderia mallei GN=fu... [more]
EFG_STRS77.492e-1141.67Elongation factor G OS=Streptococcus equi subsp. z... [more]
EFG_STREM7.492e-1141.67Elongation factor G OS=Streptococcus equi subsp. z... [more]
EFG_STRE47.492e-1141.67Elongation factor G OS=Streptococcus equi subsp. e... [more]
EFG_CHLP87.492e-1131.61Elongation factor G OS=Chlorobaculum parvum (strai... [more]
EFG_CAMC59.785e-1128.57Elongation factor G OS=Campylobacter curvus (strai... [more]
EFG_BACTN9.785e-1126.06Elongation factor G OS=Bacteroides thetaiotaomicro... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CA08FM1 AbsDev Citrus clementina cDNA clone KN0AAI3CA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873625 ID=FC873625; Name=FC873625; organism=Citrus clementina; type=EST; length=656bp
CTAAGATTCTGTCTGAGGAATTTGGTTGGGACAAGGATCTTGCCAAGAAA
ATCTGGTGTTTTGGTCCTGAGACCATTGGTCCTAACATGGTTGTGGATAT
GTGCAAGGGAGTTCAGTACTTGAATGAAATTAAGGATTCAGTTGTTGCTG
GGTTCCAGTGGGCATCAAAGGAAGGTGCATTGGCTGAAGAAAACATGAGG
GGCATTTGCTTTGAAGTTTGTGATGTGGTTCTTCATGCCGATGCTATCCA
CAGAGGTGGTGGCCAGGTTATTCCAACTGCTAGAAGGGTCATTTATGCAT
CCCAGCTTACAGCCAAACCAAGGCTTCTTGAGCCTGTCTACTTGGTGGAA
ATCCAAGCTCCTGAACAGGCACTTGGTGGTATTTACAGTGTTCTTAACCA
GAAACGTGGTCACGTTTTTGAGGAGATGCAGAGACCTGGTACCCCACTTT
ATAACATCAAGGCATACCTCCCGGTCGTTGAGTCTTTTGGATTTTCCAGC
ACTTTGAGAGCTGCAACCTCTGGACAGGCATTCCCTCAATGTGTGTTTGA
TCACTGGGACATGATGTCATCTGATCCATTGGAGCCGGGATCCCAGGCTT
CACAACTTGTTTTGGATAATAGGAAAAAGAAGGGTTTTGAAGGAACAGAT
GACCCC
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