FC873625

Overview
NameFC873625
Unique NameFC873625
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15417 contig Ccv1_Contig15417:408..1063. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873625 vs. ExPASy Swiss-Prot
Match: EF2_HALMA (Elongation factor 2 OS=Haloarcula marismortui GN=fusA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.717e-24
Identity = 65/172 (37.79%), Postives = 96/172 (55.81%), Query Frame = 3
Query:   15 EEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQA 530
            +E G DKD ++ I        G N+++D  KG+Q+LNE  + V+ G + A  +G LA E ++G    + D  LH DAIHRG  QVIP  R  ++ S + A  +LLEP+  V I  P   +G     +  +RG V ++M + G  L  ++   PV E  GFSS +R+AT G+A
Sbjct:  522 QEAGMDKDDSQNI----EHIHGTNILLDETKGIQHLNETMELVIEGLEEALDDGPLASEPVQGSLIRLHDARLHEDAIHRGPAQVIPAVREAVHNSLIDASIKLLEPIQQVRIDVPNDHMGAASGEIQGRRGRV-DDMYQEG-DLMVVEGVAPVDEMIGFSSDIRSATEGRA 687          
BLAST of FC873625 vs. ExPASy Swiss-Prot
Match: EF2_METM6 (Elongation factor 2 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=fusA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.719e-23
Identity = 62/190 (32.63%), Postives = 105/190 (55.26%), Query Frame = 3
Query:   18 EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEP 587
            E G +K+ AK++          NM+V+M +G+  L+E ++ ++ GF+   + G LA E ++G+   + D   H DAIHRG  Q+IP  R  +  +   AKP LLEP+  V I  P+  +G     +N +RG +  +M++ G  +  IK+ +PV E FGF+  +R AT G+      F  ++ + ++ L+P
Sbjct:  530 EAGLEKEQAKRVMSI----YNGNMIVNMTRGIVQLDEARELIIEGFKEGVRNGPLAAEKVQGVKIRLVDATFHEDAIHRGPAQIIPAVRFGVRDAVAQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQIL-DMEQEG-DMSIIKSSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFERVPAE-LQP 712          
BLAST of FC873625 vs. ExPASy Swiss-Prot
Match: EF2_THEVO (Elongation factor 2 OS=Thermoplasma volcanium GN=fusA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.245e-23
Identity = 62/168 (36.90%), Postives = 96/168 (57.14%), Query Frame = 3
Query:   24 GWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 527
            G D++ A+ + C      G N++ D+ +G+QYL+E  + ++  F      G LA E + G+   + D  LH D+IHRG  QVIP  R  IY +   AK  LLEPV  V I  P++ +G   + + Q+RG V E+M + G  + ++ A +PV   FGF+S +R+AT G+
Sbjct:  527 GIDREEARGLVCVE----GTNIMFDVTRGIQYLDETMELLIEAFTEVMNRGPLANEKVFGVKARLVDAKLHEDSIHRGPAQVIPAGRNSIYGAMCEAKRILLEPVQKVFINVPQEEMGSAINEVQQRRG-VIEDMTQEGEEV-SLVARIPVSGMFGFASAIRSATGGK 688          
BLAST of FC873625 vs. ExPASy Swiss-Prot
Match: ETUD1_HUMAN (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Homo sapiens GN=EFTUD1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.830e-23
Identity = 68/248 (27.42%), Postives = 107/248 (43.15%), Query Frame = 3
Query:   33 KDLAKKIWCFGPETIGPNMVVDMCKGVQY----------------LNEIKDSVVAGFQWASKEGALAEENMRGICFEV---------------------------------------CDVVLHADAIHRG-----------GGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDP 578
            +++  +IW FGP   GPN++V+  +  Q                   ++ +S+V+GFQ A+  G + EE + G+CF +                                       C          +G            GQ+I T +     +      RL+  +Y  +I A    LG +Y+VL+++ G V +E  + GT ++ IKA LPV ESFGF+  +R  TSG A PQ VF HW+++ SDP
Sbjct:  817 RNIVDQIWSFGPRKCGPNILVNKSEDFQNSVWTGPADKASKEASRYRDLGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQGASDLAKEGQEENETCSGGNENQELQDGCSEAFEKRTSQKGESPLTDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDP 1064          
BLAST of FC873625 vs. ExPASy Swiss-Prot
Match: EF2_HALSA (Elongation factor 2 OS=Halobacterium salinarium GN=fusA PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.002e-23
Identity = 64/172 (37.21%), Postives = 96/172 (55.81%), Query Frame = 3
Query:   15 EEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQA 530
            +E G DK+ ++ +       IG N+ +D  KG+Q+LNE  + VV G   + ++G LA E + G    + D  LH DAIHRG  QVIP  R  ++ + + A  RLLEP+  V I  P + +G     +  +RG V ++M + G  L  ++   PV E  GFSS +R+AT G+A
Sbjct:  522 QEAGMDKETSQDV----ENIIGRNIFIDDTKGIQHLNETMELVVDGLTDSLEDGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIPATRDAVHRALIDADIRLLEPIQDVRIDVPSEHMGAASGEVQGRRGRV-DDMYQEG-DLMVVEGIAPVDEMIGFSSDIRSATEGRA 687          
BLAST of FC873625 vs. ExPASy Swiss-Prot
Match: EF2_HALS3 (Elongation factor 2 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=fusA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.002e-23
Identity = 64/172 (37.21%), Postives = 96/172 (55.81%), Query Frame = 3
Query:   15 EEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQA 530
            +E G DK+ ++ +       IG N+ +D  KG+Q+LNE  + VV G   + ++G LA E + G    + D  LH DAIHRG  QVIP  R  ++ + + A  RLLEP+  V I  P + +G     +  +RG V ++M + G  L  ++   PV E  GFSS +R+AT G+A
Sbjct:  522 QEAGMDKETSQDV----ENIIGRNIFIDDTKGIQHLNETMELVVDGLTDSLEDGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIPATRDAVHRALIDADIRLLEPIQDVRIDVPSEHMGAASGEVQGRRGRV-DDMYQEG-DLMVVEGIAPVDEMIGFSSDIRSATEGRA 687          
BLAST of FC873625 vs. ExPASy Swiss-Prot
Match: EF2_META3 (Elongation factor 2 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=fusA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.901e-22
Identity = 65/208 (31.25%), Postives = 113/208 (54.33%), Query Frame = 3
Query:   18 EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDNRKKKGFE 641
            E G +++ AK++          N++++M +G+  L+E ++ ++ GF+ A K G LA E  +G+  ++ D V H DAIHRG  Q+IP  R  +  +   A   LLEP+  V I  P+  +G     L+ +RG +  +M++ G  +  IK+  PV E FGF+  +R AT G+      F  ++ + ++ L+P     Q+V + R +KG +
Sbjct:  530 EIGMNREEAKRVMTI----YEGNVLLNMTRGIVQLDEARELIIEGFKEAVKNGPLAAEKCQGVKVKLMDAVFHEDAIHRGPAQLIPAVRTGVRDAIAQANVGLLEPIQNVYISTPQDYMGDAMKELSNRRGQIL-DMEQEG-DMTTIKSKAPVSEMFGFAGAIRGATQGRCLWSIEFGGFEKVPTE-LQP-----QIVKEIRTRKGLK 725          
BLAST of FC873625 vs. ExPASy Swiss-Prot
Match: RIA1_YEAST (Ribosome assembly protein 1 OS=Saccharomyces cerevisiae GN=RIA1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.235e-22
Identity = 65/197 (32.99%), Postives = 101/197 (51.27%), Query Frame = 3
Query:   48 KIWCFGPETIGPNMVVD-------MCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDV-VLHADAIHRG------------GGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDP 578
            K+  FGP  +G N+++        + +G     E  DS+  GFQ A  EG LA E ++G+C  V  V  +  D I                G++I + R  I+ + L   PR++  +Y  +IQ     LG +Y+V+ Q+ G +  E  + GTP + I+A++PVVE+FG S  +R  TSG A PQ VF  ++ +  DP
Sbjct:  859 KLAGFGPSRVGCNILLSQDNLLGSLFEGTPAAFEYSDSIKNGFQLAVSEGPLANEPVQGMCVLVESVHKMSQDEIESIEDPRYQQHIVDLSGRLITSTRDAIHEAFLDWSPRIMWAIYSCDIQTSVDVLGKVYAVILQRHGKIISEEMKEGTPFFQIEAHVPVVEAFGLSEDIRKRTSGAAQPQLVFSGFECIDLDP 1055          
BLAST of FC873625 vs. ExPASy Swiss-Prot
Match: EF2_NANEQ (Elongation factor 2 OS=Nanoarchaeum equitans GN=fusA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.585e-21
Identity = 62/184 (33.70%), Postives = 95/184 (51.63%), Query Frame = 3
Query:   84 NMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDNRKKKG 635
            NM  DM +G+ ++ E+ D V+  F      G +A E   G+  ++ D  LH DAIHRG GQVIP  R  I  +   A   L EPV ++ +  P   +G + +++N +RG + +        L  IKA +PV E  GF+ TLR+ATSG+     V   ++ +      P     Q+V + R++KG
Sbjct:  560 NMFFDMTRGIIHIGEVIDMVMDAFMQVMDHGPIAWEPCIGLIVKLTDAQLHEDAIHRGPGQVIPAVREAIKLAMKDAGLVLYEPVQVILVDVPPDYIGDVTALINSRRGAILDIQTEEDRAL--IKAKVPVREMIGFTDTLRSATSGRGVWYLVDQVYEPV------PRELFDQIVREIRQRKG 735          
BLAST of FC873625 vs. ExPASy Swiss-Prot
Match: ETUD1_MOUSE (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Mus musculus GN=Eftud1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = 3
Query:  261 GQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDP 578
            GQ+I T +     +      RL+  +Y  +I A    LG +Y+VL+++ G V +E  + GT ++ IKA LPV ESFGF+  +R  TSG A PQ VF HW+++ SDP
Sbjct:  966 GQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEVIPSDP 1071          
The following BLAST results are available for this feature:
BLAST of FC873625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
EF2_HALMA7.717e-2437.79Elongation factor 2 OS=Haloarcula marismortui GN=f... [more]
EF2_METM61.719e-2332.63Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_THEVO2.245e-2336.90Elongation factor 2 OS=Thermoplasma volcanium GN=f... [more]
ETUD1_HUMAN3.830e-2327.42Elongation factor Tu GTP-binding domain-containing... [more]
EF2_HALSA5.002e-2337.21Elongation factor 2 OS=Halobacterium salinarium GN... [more]
EF2_HALS35.002e-2337.21Elongation factor 2 OS=Halobacterium salinarum (st... [more]
EF2_META31.901e-2231.25Elongation factor 2 OS=Methanococcus aeolicus (str... [more]
RIA1_YEAST4.235e-2232.99Ribosome assembly protein 1 OS=Saccharomyces cerev... [more]
EF2_NANEQ3.585e-2133.70Elongation factor 2 OS=Nanoarchaeum equitans GN=fu... [more]
ETUD1_MOUSE2.840e-1841.51Elongation factor Tu GTP-binding domain-containing... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CA08FM1 AbsDev Citrus clementina cDNA clone KN0AAI3CA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873625 ID=FC873625; Name=FC873625; organism=Citrus clementina; type=EST; length=656bp
CTAAGATTCTGTCTGAGGAATTTGGTTGGGACAAGGATCTTGCCAAGAAA
ATCTGGTGTTTTGGTCCTGAGACCATTGGTCCTAACATGGTTGTGGATAT
GTGCAAGGGAGTTCAGTACTTGAATGAAATTAAGGATTCAGTTGTTGCTG
GGTTCCAGTGGGCATCAAAGGAAGGTGCATTGGCTGAAGAAAACATGAGG
GGCATTTGCTTTGAAGTTTGTGATGTGGTTCTTCATGCCGATGCTATCCA
CAGAGGTGGTGGCCAGGTTATTCCAACTGCTAGAAGGGTCATTTATGCAT
CCCAGCTTACAGCCAAACCAAGGCTTCTTGAGCCTGTCTACTTGGTGGAA
ATCCAAGCTCCTGAACAGGCACTTGGTGGTATTTACAGTGTTCTTAACCA
GAAACGTGGTCACGTTTTTGAGGAGATGCAGAGACCTGGTACCCCACTTT
ATAACATCAAGGCATACCTCCCGGTCGTTGAGTCTTTTGGATTTTCCAGC
ACTTTGAGAGCTGCAACCTCTGGACAGGCATTCCCTCAATGTGTGTTTGA
TCACTGGGACATGATGTCATCTGATCCATTGGAGCCGGGATCCCAGGCTT
CACAACTTGTTTTGGATAATAGGAAAAAGAAGGGTTTTGAAGGAACAGAT
GACCCC
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