FC873628

Overview
NameFC873628
Unique NameFC873628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.057e-51
Identity = 97/242 (40.08%), Postives = 144/242 (59.50%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQS-SEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            +L +DYPY  DGL +W AI TWV+ Y   +Y + + +++D E+QAW+ E   VGH D R+A WW ++++ ++L+  +T +IW +SA HA++NFGQY Y GY PNRP L R+ IPDE   EF   + D  KY+   +P     T   A+V+ LS H+ DE Y+G+RQ  S WT D                  ++I +RNR+   +NR G   + Y+LM P      ++ G+T +G+PNS+SI
Sbjct:  690 LLVEDYPYANDGLLLWSAIQTWVRTYVERYYANSNLIQTDTELQAWYSESINVGHADHRDAEWWPKLSTVEDLVSVITTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDESDPEFTSFIEDPQKYFFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVDAFYGFSAEIGRIEKEIDKRNRDPSRRNRCGAGVLPYELMAP-----SSEPGVTCRGVPNSVSI 926          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.583e-51
Identity = 98/242 (40.50%), Postives = 144/242 (59.50%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQS-SEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            +L +DYPY  DGL +W AI TWV+ Y   +Y + + +K+D E+Q+W+ E   VGH D R+A WW E+++ D+L+  LT LIW +SA HA++NFGQY Y GY PNRP L R+ IPDE   E+A  +   +KYY   +P     +   A+V+ LS H+ DE Y+G+RQ  S WT D                  ++I +RN +   +NR G   + Y+L+ P      ++ G+T +G+PNS+SI
Sbjct:  683 LLIEDYPYANDGLLLWSAIQTWVRTYVERYYPNPNLIKTDSELQSWYSESINVGHADLRDADWWPELSTVDDLVSILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDESDPEYASFISHPEKYYFSSMPSLAQTSKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAFYGFAAEIGRIEKEIEKRNADPDRRNRCGAGVLPYELLVP-----SSEPGVTCRGVPNSVSI 919          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.630e-48
Identity = 91/241 (37.76%), Postives = 137/241 (56.85%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            +L +DYPY  DGL +W AI  W + Y + +Y  D++V++D E+Q+W+ E  + GH DKR A WW  +++  +L   LT L+W  SA HA++NFGQY   GY PNRP L R+ +P EG  E+A L+ D  +++L  LP     T    +++ LS H++DE YLG+R    WT D                  ++I  RN +   +NR G   + Y+LM P +       G+T +G+PNS++I
Sbjct:  664 LLIEDYPYAADGLLLWSAISRWCEAYVAAYYPSDEAVQADYELQSWYAEAVQSGHADKRGAPWWPRLSTPGDLASLLTTLVWLCSAQHAALNFGQYPLGGYIPNRPPLMRRLVPAEGDPEYAHLVADPHRFFLSALPSLTQTTTFMTVIDTLSTHSADEEYLGERPDEAWTADPAALAAAREFAADVRRAEEEIERRNADPSRRNRCGAGVLPYELMAPSSG-----PGITCRGVPNSVTI 899          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.129e-48
Identity = 99/244 (40.57%), Postives = 144/244 (59.02%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAEL---LIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            +  +DYP+  DGL +W AI TWV+ Y + FY D DSV  DEE+QA+W E+R  GHGDK++A WW +++S ++L   LT ++W ++A HA+VNFGQY + GY PNRP++ R  +P E   + A +   L + D+   +  P +   T+  A+++VLS H++DE YLG  Q+  W  D                    I  RN++ +LKNR G   + Y+LM P      +D G+TG GIPNS SI
Sbjct:  703 LAIEDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSTHSTDEEYLGGEQTRPWNSDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKP-----FSDAGVTGMGIPNSTSI 941          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.129e-48
Identity = 99/244 (40.57%), Postives = 144/244 (59.02%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAEL---LIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            +  +DYP+  DGL +W AI TWV+ Y + FY D DSV  DEE+QA+W E+R  GHGDK++A WW +++S ++L   LT ++W ++A HA+VNFGQY + GY PNRP++ R  +P E   + A +   L + D+   +  P +   T+  A+++VLS H++DE YLG  Q+  W  D                    I  RN++ +LKNR G   + Y+LM P      +D G+TG GIPNS SI
Sbjct:  686 LAIEDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSSHSTDEEYLGGEQTRPWNSDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKP-----FSDSGVTGMGIPNSTSI 924          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.195e-48
Identity = 97/242 (40.08%), Postives = 136/242 (56.20%), Query Frame = 1
Query:   13 DYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIP-----DEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            DYP+  DGL +W AI  WV DY   +Y D++ + SDEE+Q WW E+R +GHGDK++  WW  + ++D+LI  +T + W +S  HA+VNFGQY Y GY PNRPT  R  +P     DE   EF E     +K  LK  P +   TL    +++LS H+ DE Y+G++Q + W ++                    I ERN N  LKNR G   + Y+L+ P + +     G+TG G+P SISI
Sbjct:  663 DYPFANDGLILWDAIKEWVTDYVKHYYPDEELITSDEELQGWWSEVRNIGHGDKKDEPWWPVLKTQDDLIGVVTTIAWVTSGHHAAVNFGQYGYGGYFPNRPTTTRIRMPTEDPTDEALKEFYE---SPEKVLLKTYPSQKQATLVMVTLDLLSTHSPDEEYIGEQQEASWANEPVINAAFERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKPTSEH-----GVTGMGVPYSISI 896          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.354e-47
Identity = 94/243 (38.68%), Postives = 136/243 (55.97%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTH--EFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            +  +DYPY  DGL +W +I  W  DY   +YK D  V  DEE++AWW+E+R  GH DK++  WW   ++++NL+Q LTI++W +S  HA+VNFGQY YAGY PNRPT+ R+ IP E     E  + +   ++  L+ LP +       A +++LS H+ DE Y+G+     W  +                    I  RN N   KNR G   + Y+L+ P      ++ G+TG+GIPNSISI
Sbjct:  659 LAIKDYPYADDGLLIWGSIKQWASDYVDFYYKSDGDVAGDEELRAWWEEVRTKGHADKKDEPWWPVCDTKENLVQILTIIMWVTSGHHAAVNFGQYHYAGYFPNRPTVVRRNIPVEENRDDEMKKFMARPEEVLLQSLPSQMQAIKVMATLDILSSHSPDEEYMGEYAEPAWLAEPMVKAAFEKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKP-----FSEPGVTGRGIPNSISI 896          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.945e-47
Identity = 97/243 (39.92%), Postives = 137/243 (56.38%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSE--WTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            ++  DYPY  DGL +W AI   V+ Y   FY D  S+ SD E+QAWW EI+  GH DK++  WW ++N+  +L Q LT +IW +S  HA++NFGQY + GY PNRPTL RK IP E   ++   + +    +L  LP +   T   A+ E LS H+ DE YL + +  +  W  D+                 + I ERN++ +LKNR G     Y+L+ P + +     G+TG+GIPNSISI
Sbjct:  680 LVIDDYPYAADGLLIWKAIKDLVESYVKHFYSDSKSITSDLELQAWWDEIKNKGHYDKKDEPWWPKLNTTQDLSQILTNMIWIASGQHAAINFGQYPFGGYVPNRPTLLRKLIPQETDPDYEMFMRNPQYSFLGSLPTQLQATKVMAVQETLSTHSPDEEYLIELREVQRHWFQDEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTGAGMPPYELLLPTSPH-----GVTGRGIPNSISI 917          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.865e-44
Identity = 94/246 (38.21%), Postives = 136/246 (55.28%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPD--EGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSS---EWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            +L +DYPY  DGL +W AI +WV+ Y  ++Y D  +V+ D E+Q W+ E   VGHGD R+A WW  +++  +L   LT L+W +SA HA++NFGQY   GY PNRP L R+ +PD      E+A  L D  +++L  +P     T   A+V+ LS H+ DE YLG+ +      WT D+                 + I  RN +   KNR G   + Y+L+ P      +  G+T +G+PNSISI
Sbjct:  678 LLIEDYPYANDGLLLWSAIRSWVESYVQLYYPDAGTVQCDLELQGWYHESIHVGHGDLRHAPWWPPLSTPVDLASILTTLVWLASAQHAALNFGQYPLGGYVPNRPPLIRRLLPDLERDAAEYAAFLADPHRFFLNAMPGVLEATKFMAVVDTLSTHSPDEEYLGEGRDEGGVPWTADEAAVAAHGMFAADVRRAEETIERRNADHGRKNRCGAGVLPYELLAP-----SSPPGVTCRGVPNSISI 918          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.427e-44
Identity = 92/248 (37.10%), Postives = 132/248 (53.23%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDE-GTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGK------GIPNSISI 723
            +  +DYPY  DGL VW AI  W   Y   +Y     +  DEE+QAWW E+R  GH DK++  WW E++S +NL Q L  ++W +S  HA+VNFGQY  AGY PNRPT+ R+ +P E G  +  + +   +K  L   P ++   +  A++++LS H+SDE Y+G  +   WT D                  +++ E N +   KNR G   + Y L+ P   +   DG  T +      GIPNSISI
Sbjct:  690 LAIEDYPYANDGLLVWDAIKQWALTYVQHYYPCAADIVDDEELQAWWTEVRTKGHADKQDEPWWPELDSHENLAQTLATIMWVTSGHHAAVNFGQYPMAGYIPNRPTMARRNMPTEIGGDDMRDFVEAPEKVLLDTFPSQYQSAIVLAILDLLSTHSSDEEYMGTHEEPAWTKDGVINQAFEEFKESTRKIVEQVDEWNNDPDRKNRHGAGMVPYVLLRPSDGD-PTDGDPTDEKMVMEMGIPNSISI 936          
The following BLAST results are available for this feature:
BLAST of FC873628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
LOX4_ARATH2.057e-5140.08Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ARATH4.583e-5140.50Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX5_ORYSJ1.630e-4837.76Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOXC2_ORYSJ2.129e-4840.57Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOXC1_ORYSJ2.129e-4840.57Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX2_ARATH6.195e-4840.08Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX23_HORVU2.354e-4738.68Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOX6_ARATH8.945e-4739.92Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX6_ORYSJ1.865e-4438.21Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX21_HORVU5.427e-4437.10Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1DE01FM2 AbsDev Citrus clementina cDNA clone KN0AAI1DE01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873628 ID=FC873628; Name=FC873628; organism=Citrus clementina; type=EST; length=789bp
ATTCTCTTCCAAGACTATCCCTATGGTTTAGATGGACTTGATGTATGGCT
TGCCATTATGACATGGGTCAAAGATTATTGCTCCATCTTCTACAAAGATG
ATGATTCTGTCAAGTCTGACGAGGAAATCCAAGCATGGTGGAAAGAAATC
CGAGAAGTAGGTCATGGTGATAAGCGCAATGCGAGCTGGTGGTTTGAAAT
GAACTCTCGTGACAACCTAATACAAGCTCTAACTATTCTCATATGGACTT
CGTCAGCCCTTCATGCTTCAGTGAACTTTGGGCAGTATGCATATGCTGGA
TACCCTCCAAATCGTCCCACACTATGTCGAAAATTCATTCCGGATGAAGG
AACACACGAATTTGCAGAGTTATTAATTGATTCAGACAAGTACTATCTTA
AAATGCTACCTGAAAGATTTGCGATAACCCTTAGTACTGCATTGGTAGAA
GTCTTATCGCGGCATACATCAGATGAAGTTTACTTGGGGCAGAGGCAATC
ATCAGAATGGACAGATGATCAGGAGGTTTTGCTAAAATTTGAAGAGTTCG
GTGAGAAGTTGAAAGAAATAGAGCAAAAAATCGTGGAGAGGAACAGAAAT
GCCAGGCTTAAGAACAGATGGGGACCTGCCAAGATAGCGTACAAACTTAT
GCATCCCGATACATCAAACGTCAAAAACGACGGAGGCCTCACAGGAAAAG
GTATCCCAAACAGTATATCCATTTAACGCAAGTTCAAGTACATTCAATAA
AAACTATTAAGCGCTTCTGGGTGTAAAAAAAAAAAAAAA
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