FC873628

Overview
NameFC873628
Unique NameFC873628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.693e-43
Identity = 88/242 (36.36%), Postives = 128/242 (52.89%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDE-GTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            +  +DYPY  DGL VW AI  W  DY + +Y     +  DEE+Q WW E+R  GH DK++  WW E++  ++L+Q L  ++W +SA HA+VNFGQY  AGY PN P++ R+ +P E G  E        +K +L  LP +    +  A +++LS H SDE Y+G  Q   W  D                  +++ E N++   +NR G   + Y L+ P   N  +   +   GIPNSISI
Sbjct:  691 LAIEDYPYANDGLLVWDAIKQWASDYVAHYYPCAVDIVDDEELQDWWTEVRTKGHPDKQDEPWWPELDCHESLVQVLATIMWVTSAHHAAVNFGQYPMAGYVPNHPSIARRNMPCEMGPEEMLAFKAAPEKVWLDTLPSQLQTVMVMATLDLLSSHASDEEYMGTHQEPAWQRDGEVDKAFQVFQKKMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: AOSL_PLEHO (Allene oxide synthase-lipoxygenase protein OS=Plexaura homomalla PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.031e-18
Identity = 64/199 (32.16%), Postives = 97/199 (48.74%), Query Frame = 1
Query:   22 YGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIRE------VGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRN 600
            Y  DGL +W AI T++ +  +IFYK+DD VK D EIQ+W  ++ +       GH D    +      SR+ L + LT L++T S  HA+VNF Q  + G+ PN P + R   P +      E  + S    L  LP +     + A V +L++ + DE YLG   ++ W +D+                 +KI +RN N
Sbjct:  860 YRDDGLALWEAIETFIGEIIAIFYKNDDDVKRDNEIQSWIYDVHKNGWRVNPGHQDHGVPA---SFESREQLKEVLTSLVFTFSCQHAAVNFSQKDHYGFTPNAPAVLRHPPPKKK----GEATLQS---ILSTLPSKSQAAKAIATVYILTKFSEDERYLGNYSATAW-EDKDALDAINRFQDKLEDISKKIKQRNEN 1047          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX5_RAT (Arachidonate 5-lipoxygenase OS=Rattus norvegicus GN=Alox5 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.944e-17
Identity = 67/236 (28.39%), Postives = 108/236 (45.76%), Query Frame = 1
Query:   16 YPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            Y Y  DGL VW AI ++  +  SI+Y+DD  V+ D+E+Q + K++   G   ++ + +   + SR+ L + LT++I+T+SA HA+VNFGQY +  + PN P   R   P        E ++D+       LP+R         V  LS+   +E++LG      +  ++                   I ERN+N          K+ Y  + PD              IPNS++I
Sbjct:  468 YFYRDDGLLVWEAIQSFTTEVVSIYYEDDQVVEEDQELQDFVKDVYVYGMRGRKASGFPKSIKSREKLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPPTAKGVVTIEQIVDT-------LPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFI-EKPVKEAMIRFRKNLEAIVSVIAERNKN---------KKLPYYYLSPDR-------------IPNSVAI 673          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX5_MOUSE (Arachidonate 5-lipoxygenase OS=Mus musculus GN=Alox5 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.315e-17
Identity = 67/236 (28.39%), Postives = 108/236 (45.76%), Query Frame = 1
Query:   16 YPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            Y Y  DGL VW AI ++  +  SI+Y++D  V+ D+E+Q + K++   G   K+ + +   + SR+ L + LT++I+T+SA HA+VNFGQY +  + PN P   R   P        E ++D+       LP+R         V  LS+   +E++LG      +  ++                   I ERN+N          K+ Y  + PD              IPNS++I
Sbjct:  469 YFYRDDGLLVWEAIQSFTMEVVSIYYENDQVVEEDQELQDFVKDVYVYGMRGKKASGFPKSIKSREKLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPPTAKGVVTIEQIVDT-------LPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFI-EKPVKEAMIRFRKNLEAIISVIAERNKN---------KKLPYYYLSPDR-------------IPNSVAI 674          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX5_MESAU (Arachidonate 5-lipoxygenase OS=Mesocricetus auratus GN=ALOX5 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15
Identity = 65/236 (27.54%), Postives = 105/236 (44.49%), Query Frame = 1
Query:   16 YPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            Y Y  DGL VW AI ++  +  SI+Y+DD  V  D+E+Q + K++   G   ++ + +   + SR+ L + LT++I+T+SA HA+VNFGQY +  + PN P   R   P         +     +  +  LP+R         V  LS+   +E++LG      +  ++                   I ERN+N          K+ Y  + PD              IPNS++I
Sbjct:  468 YFYRDDGLLVWEAIQSFTSEVVSIYYEDDQVVMEDQELQDFVKDVYVYGMRGRKASGFPKSIKSREKLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMR--APPATAKGVVTI-----EQIVATLPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFI-EKPVKEAMTRFRKNLEAIVNVIAERNKN---------KKLPYYYLSPDR-------------IPNSVAI 673          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX5_HUMAN (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-15
Identity = 51/158 (32.28%), Postives = 83/158 (52.53%), Query Frame = 1
Query:   16 YPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLG 489
            Y Y  DGL VW AI T+  +   I+Y+ D  V+ D E+Q +  ++   G   ++++ +   + SR+ L + LT++I+T+SA HA+VNFGQY +  + PN P   R   P        E ++D+       LP+R         V  LS+   +E++LG
Sbjct:  469 YFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPPTAKGVVTIEQIVDT-------LPDRGRSCWHLGAVWALSQFQENELFLG 619          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX_PSEAE (Oleic acid lipoxygenase OS=Pseudomonas aeruginosa GN=lox PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 54/160 (33.75%), Postives = 80/160 (50.00%), Query Frame = 1
Query:   13 DYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQ 492
            DYPY  DGL VW AI  W  DY +++Y  D  V +D E+ AW  E+  +G G     + +  +  R  L++ LT++I+T+SA HA+VNF Q +   Y P    +     PD  + +       S+  +LKM+P         AL +V   H    VY G+
Sbjct:  477 DYPYRDDGLLVWNAIRQWAADYVAVYYASDGDVTADVELAAWVGEV--IGSG---KVAGFRPITGRSQLVEVLTMVIFTASAQHAAVNFPQPSMMTYAPAICAMSAAPAPDSPSGK-------SEADWLKMMPPAL-----VALEKVNIYHLLGSVYHGR 619          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOXA_PSEAE (Arachidonate 15-lipoxygenase OS=Pseudomonas aeruginosa GN=loxA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 54/160 (33.75%), Postives = 80/160 (50.00%), Query Frame = 1
Query:   13 DYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQ 492
            DYPY  DGL VW AI  W  DY +++Y  D  V +D E+ AW  E+  +G G     + +  +  R  L++ LT++I+T+SA HA+VNF Q +   Y P    +     PD  + +       S+  +LKM+P         AL +V   H    VY G+
Sbjct:  477 DYPYRDDGLLVWNAIRQWAADYVAVYYASDGDVTADVELAAWVGEV--IGSG---KVAGFRPITGRSQLVEVLTMVIFTASAQHAAVNFPQPSMMTYAPAICAMSAAPAPDSPSGK-------SEADWLKMMPPTL-----VALEKVNIYHLLGSVYHGR 619          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX12_MOUSE (Arachidonate 12-lipoxygenase, 12S-type OS=Mus musculus GN=Alox12 PE=1 SV=4)

HSP 1 Score: 78.9518 bits (193), Expect = 3.431e-14
Identity = 51/165 (30.91%), Postives = 75/165 (45.45%), Query Frame = 1
Query:   22 YGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTD 516
            Y  D L +W     +VK    +FY+ DD V+ D E+QAW +EI EVG    ++  +     SR  L   LT+ ++T +A HA++N GQ  + G+ PN P   R   P        E ++ S       LP+     L   +   L R   D V LG      ++D
Sbjct:  460 YARDALQLWEVTARYVKGMVHLFYQSDDIVRGDPELQAWCREITEVGLCHAQDRGFPVSFQSRAQLCHFLTMCVFTCTAQHAAINQGQLDWYGWVPNAPCTMRMPPPTSKDDVTMETVMGS-------LPDVQKACLQMTITWHLGRLQPDMVPLGHHTEKYFSD 617          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LX15B_MOUSE (Arachidonate 15-lipoxygenase B OS=Mus musculus GN=Alox15b PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.643e-14
Identity = 49/168 (29.17%), Postives = 88/168 (52.38%), Query Frame = 1
Query:   16 YPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDD 519
            Y Y  DG+ +W AI ++V +  SI+Y  D SV+ D+E+QAW +EI   G   + ++     +++R+ L+Q +T++I+T SA HA+V+ GQ+    + PN P   +  +P   +   A       + ++  LP   + +     + +LS    D+  LG      +T+D
Sbjct:  472 YYYRDDGMQIWGAIKSFVSEIVSIYYPSDTSVQDDQELQAWVREIFSEGFLGRESSGMPSLLDTREALVQYITMVIFTCSAKHAAVSSGQFDSCVWMPNLPPTMQ--LPPPTSKGQAR-----PESFIATLPAVNSSSYHIIALWLLSAEPGDQRPLGHYPDEHFTED 632          
The following BLAST results are available for this feature:
BLAST of FC873628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
LOX22_HORVU2.693e-4336.36Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
AOSL_PLEHO1.031e-1832.16Allene oxide synthase-lipoxygenase protein OS=Plex... [more]
LOX5_RAT1.944e-1728.39Arachidonate 5-lipoxygenase OS=Rattus norvegicus G... [more]
LOX5_MOUSE3.315e-1728.39Arachidonate 5-lipoxygenase OS=Mus musculus GN=Alo... [more]
LOX5_MESAU1.067e-1527.54Arachidonate 5-lipoxygenase OS=Mesocricetus auratu... [more]
LOX5_HUMAN1.819e-1532.28Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALO... [more]
LOX_PSEAE6.913e-1533.75Oleic acid lipoxygenase OS=Pseudomonas aeruginosa ... [more]
LOXA_PSEAE6.913e-1533.75Arachidonate 15-lipoxygenase OS=Pseudomonas aerugi... [more]
LOX12_MOUSE3.431e-1430.91Arachidonate 12-lipoxygenase, 12S-type OS=Mus musc... [more]
LX15B_MOUSE7.643e-1429.17Arachidonate 15-lipoxygenase B OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1DE01FM2 AbsDev Citrus clementina cDNA clone KN0AAI1DE01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873628 ID=FC873628; Name=FC873628; organism=Citrus clementina; type=EST; length=789bp
ATTCTCTTCCAAGACTATCCCTATGGTTTAGATGGACTTGATGTATGGCT
TGCCATTATGACATGGGTCAAAGATTATTGCTCCATCTTCTACAAAGATG
ATGATTCTGTCAAGTCTGACGAGGAAATCCAAGCATGGTGGAAAGAAATC
CGAGAAGTAGGTCATGGTGATAAGCGCAATGCGAGCTGGTGGTTTGAAAT
GAACTCTCGTGACAACCTAATACAAGCTCTAACTATTCTCATATGGACTT
CGTCAGCCCTTCATGCTTCAGTGAACTTTGGGCAGTATGCATATGCTGGA
TACCCTCCAAATCGTCCCACACTATGTCGAAAATTCATTCCGGATGAAGG
AACACACGAATTTGCAGAGTTATTAATTGATTCAGACAAGTACTATCTTA
AAATGCTACCTGAAAGATTTGCGATAACCCTTAGTACTGCATTGGTAGAA
GTCTTATCGCGGCATACATCAGATGAAGTTTACTTGGGGCAGAGGCAATC
ATCAGAATGGACAGATGATCAGGAGGTTTTGCTAAAATTTGAAGAGTTCG
GTGAGAAGTTGAAAGAAATAGAGCAAAAAATCGTGGAGAGGAACAGAAAT
GCCAGGCTTAAGAACAGATGGGGACCTGCCAAGATAGCGTACAAACTTAT
GCATCCCGATACATCAAACGTCAAAAACGACGGAGGCCTCACAGGAAAAG
GTATCCCAAACAGTATATCCATTTAACGCAAGTTCAAGTACATTCAATAA
AAACTATTAAGCGCTTCTGGGTGTAAAAAAAAAAAAAAA
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