FC873628

Overview
NameFC873628
Unique NameFC873628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1114 contig Ccv1_Contig1114:1..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX12_HUMAN (Arachidonate 12-lipoxygenase, 12S-type OS=Homo sapiens GN=ALOX12 PE=1 SV=4)

HSP 1 Score: 77.411 bits (189), Expect = 9.982e-14
Identity = 51/159 (32.08%), Postives = 76/159 (47.80%), Query Frame = 1
Query:   22 YGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQ 498
            Y  D L +W  I  +V+    +FY+ DD VK D E+QAW +EI EVG    ++  +     S+  L   LT+ ++T +A HA++N GQ  +  + PN P  C   +P   T E   +        +  LP+     L  A+   LSR   D V LG  +
Sbjct:  460 YAHDALRLWEIIARYVEGIVHLFYQRDDIVKGDPELQAWCREITEVGLCQAQDRGFPVSFQSQSQLCHFLTMCVFTCTAQHAAINQGQLDWYAWVPNAP--CTMRMPPPTTKEDVTMAT-----VMGSLPDVRQACLQMAISWHLSRRQPDMVPLGHHK 611          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOXE3_HUMAN (Epidermis-type lipoxygenase 3 OS=Homo sapiens GN=ALOXE3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.304e-13
Identity = 50/170 (29.41%), Postives = 84/170 (49.41%), Query Frame = 1
Query:   13 DYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPD-EGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDD 519
            +Y Y  DGL +W AI ++V +    +Y  D SV+ D E+QAW  EI       + ++ +   + +   +++ LT +I+  SA HA+VN GQ+ +  + PN P+  R+  P  +GT           K YL  LPE      +  L  ++S+   D+  LG      +T++
Sbjct:  505 NYHYRDDGLKIWAAIESFVSEIVGYYYPSDASVQQDSELQAWTGEIFAQAFLGRESSGFPSRLCTPGEMVKFLTAIIFNCSAQHAAVNSGQHDFGAWMPNAPSSMRQPPPQTKGTTTL--------KTYLDTLPEVNISCNNLLLFWLVSQEPKDQRPLGTYPDEHFTEE 666          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LX15B_HUMAN (Arachidonate 15-lipoxygenase B OS=Homo sapiens GN=ALOX15B PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.904e-13
Identity = 36/101 (35.64%), Postives = 62/101 (61.39%), Query Frame = 1
Query:   16 YPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRP 318
            Y Y  DG+ +W A+  +V +   I+Y  D+SV+ D E+QAW +EI   G  ++ ++     + +R+ L+Q +T++I+T SA HA+V+ GQ+    + PN P
Sbjct:  471 YYYRDDGMQIWGAVERFVSEIIGIYYPSDESVQDDRELQAWVREIFSKGFLNQESSGIPSSLETREALVQYVTMVIFTCSAKHAAVSAGQFDSCAWMPNLP 571          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOXE3_MOUSE (Epidermis-type lipoxygenase 3 OS=Mus musculus GN=Aloxe3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.450e-13
Identity = 50/169 (29.59%), Postives = 82/169 (48.52%), Query Frame = 1
Query:   13 DYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDD 519
            +Y Y  DGL +W AI  +V +  S +Y  D SV+ D E+QAW  EI       + ++ +   + +   L++ LT +I+  SA HA+ N GQ+ +  + PN P+  R+  P   T     +     K YL  LPE      +  L  ++S+   D+  LG      +T++
Sbjct:  505 NYHYRDDGLKIWAAIERFVSEIVSYYYPSDASVQQDCELQAWVGEIFAQAFLGRESSGFPSRLCTPGELVKYLTAIIFNCSAQHAAFNSGQHDFGAWMPNAPSSMRQ--PPPQTKGDTTM-----KSYLDTLPEVNTTCRNLLLFWLVSQEPKDQRPLGTYPDEHFTEE 666          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX15_PONAB (Arachidonate 15-lipoxygenase OS=Pongo abelii GN=ALOX15 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12
Identity = 48/159 (30.19%), Postives = 77/159 (48.43%), Query Frame = 1
Query:   22 YGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQ 498
            Y  D L +W  I  +V+   S+ YK D +VK D E+Q W +EI E+G    ++  +   + SRD +   +T+ I+T +  HASV+ GQ  +  + PN P  C   +P   T + A L     +  +  LP     +L  ++   L R     V +GQ +
Sbjct:  460 YAQDALRLWEIIYRYVEGIVSLHYKTDVAVKDDPELQTWCREITEIGLQGAQDRGFPVSLQSRDQVCHFVTMCIFTCTGQHASVHLGQLDWYSWVPNAP--CTMRLPPPTTKD-ATL-----ETVMATLPNFHQASLQMSITWQLGRRQPVMVAVGQHE 610          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX15_HUMAN (Arachidonate 15-lipoxygenase OS=Homo sapiens GN=ALOX15 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 47/159 (29.56%), Postives = 77/159 (48.43%), Query Frame = 1
Query:   22 YGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQ 498
            Y  D L +W  I  +V+   S+ YK D +VK D E+Q W +EI E+G    ++  +   + +RD +   +T+ I+T +  HASV+ GQ  +  + PN P  C   +P   T + A L     +  +  LP     +L  ++   L R     V +GQ +
Sbjct:  460 YAQDALRLWEIIYRYVEGIVSLHYKTDVAVKDDPELQTWCREITEIGLQGAQDRGFPVSLQARDQVCHFVTMCIFTCTGQHASVHLGQLDWYSWVPNAP--CTMRLPPPTTKD-ATL-----ETVMATLPNFHQASLQMSITWQLGRRQPVMVAVGQHE 610          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX12_BOVIN (Arachidonate 12-lipoxygenase, 12S-type OS=Bos taurus GN=ALOX12 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.154e-12
Identity = 45/159 (28.30%), Postives = 78/159 (49.06%), Query Frame = 1
Query:   22 YGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQ 498
            Y  D L +W  +  +V+   S+ YK D+SV+ D E+QAW ++I E+G    ++  +   + S+D L   +T+ I+T +  H+S + GQ  +  + PN P  C   +P   T +     +  +K  +  LP     +L  ++   L R     V LGQ +
Sbjct:  461 YAQDALRLWEILSRYVEGIVSLHYKTDESVRDDIELQAWCRDITEIGLLGAQDRGFPVTLQSKDQLCHFVTMCIFTCTGQHSSTHLGQLDWYSWVPNAP--CTMRLPPPTTKD-----VTLEK-VMATLPNFHQASLQMSITWQLGRRQPIMVALGQHE 611          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LX15B_RAT (Arachidonate 15-lipoxygenase B OS=Rattus norvegicus GN=Alox15b PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 35/101 (34.65%), Postives = 61/101 (60.40%), Query Frame = 1
Query:   16 YPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRP 318
            Y Y  DG+ +W AI ++V +   I+Y  D SV+ D+E+QAW  EI   G   + ++     +++++ L+Q +T++I+T SA HA+V+  Q+    + PN P
Sbjct:  472 YYYRDDGMQIWSAIRSFVSEIVDIYYPSDASVRDDQELQAWVGEIFSEGFLSQESSGMPSLLDTQEALVQYVTMVIFTCSAKHAAVSASQFDSCVWMPNLP 572          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX12_PIG (Arachidonate 12-lipoxygenase, 12S-type OS=Sus scrofa GN=ALOX12 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.718e-11
Identity = 47/159 (29.56%), Postives = 77/159 (48.43%), Query Frame = 1
Query:   22 YGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQ 498
            Y  D L +W  I  +V+   S+ YK D+SVK D E+QAW +E  E+G    ++  +   + S++ L   +T+ I+T +  H+S + GQ  +  + PN P  C   +P   T + A L     +  +  LP     +L  ++   L R     V LGQ +
Sbjct:  461 YAQDALRLWEVISRYVEGIVSLHYKTDESVKEDFELQAWCREFTEIGLLGAQDRGFPVSLQSKEQLCHFVTMCIFTCTGQHSSNHLGQLDWYTWVPNAP--CTMRLPPPTTKD-ATL-----ETVMATLPNFHQASLQMSITWQLGRCQPTMVALGQHE 611          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LX12L_MOUSE (Arachidonate 12-lipoxygenase, leukocyte-type OS=Mus musculus GN=Alox12l PE=1 SV=4)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 44/167 (26.35%), Postives = 79/167 (47.31%), Query Frame = 1
Query:   22 YGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQ 522
            Y  D L +W  +  +V     ++YK D +V+ D E+Q+W +EI E+G    ++  +   + SR      +T+ I+T +A H+S++ GQ  +  + PN P  C   +P   T +       + +  +  LP     TL   +V +L R  +  V LGQ     + + +
Sbjct:  461 YAKDALQLWQVMNRYVVGMFDLYYKTDQAVQDDYELQSWCQEITEIGLQGAQDRGFPTSLQSRAQACHFITMCIFTCTAQHSSIHLGQLDWFYWVPNAP--CTMRLPPPKTKD------ATMEKLMATLPNPNQSTLQINVVWLLGRRQAVMVPLGQHSEEHFPNPE 619          
The following BLAST results are available for this feature:
BLAST of FC873628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
LOX12_HUMAN9.982e-1432.08Arachidonate 12-lipoxygenase, 12S-type OS=Homo sap... [more]
LOXE3_HUMAN1.304e-1329.41Epidermis-type lipoxygenase 3 OS=Homo sapiens GN=A... [more]
LX15B_HUMAN2.904e-1335.64Arachidonate 15-lipoxygenase B OS=Homo sapiens GN=... [more]
LOXE3_MOUSE8.450e-1329.59Epidermis-type lipoxygenase 3 OS=Mus musculus GN=A... [more]
LOX15_PONAB2.459e-1230.19Arachidonate 15-lipoxygenase OS=Pongo abelii GN=AL... [more]
LOX15_HUMAN5.477e-1229.56Arachidonate 15-lipoxygenase OS=Homo sapiens GN=AL... [more]
LOX12_BOVIN7.154e-1228.30Arachidonate 12-lipoxygenase, 12S-type OS=Bos taur... [more]
LX15B_RAT9.343e-1234.65Arachidonate 15-lipoxygenase B OS=Rattus norvegicu... [more]
LOX12_PIG2.718e-1129.56Arachidonate 12-lipoxygenase, 12S-type OS=Sus scro... [more]
LX12L_MOUSE3.550e-1126.35Arachidonate 12-lipoxygenase, leukocyte-type OS=Mu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1DE01FM2 AbsDev Citrus clementina cDNA clone KN0AAI1DE01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873628 ID=FC873628; Name=FC873628; organism=Citrus clementina; type=EST; length=789bp
ATTCTCTTCCAAGACTATCCCTATGGTTTAGATGGACTTGATGTATGGCT
TGCCATTATGACATGGGTCAAAGATTATTGCTCCATCTTCTACAAAGATG
ATGATTCTGTCAAGTCTGACGAGGAAATCCAAGCATGGTGGAAAGAAATC
CGAGAAGTAGGTCATGGTGATAAGCGCAATGCGAGCTGGTGGTTTGAAAT
GAACTCTCGTGACAACCTAATACAAGCTCTAACTATTCTCATATGGACTT
CGTCAGCCCTTCATGCTTCAGTGAACTTTGGGCAGTATGCATATGCTGGA
TACCCTCCAAATCGTCCCACACTATGTCGAAAATTCATTCCGGATGAAGG
AACACACGAATTTGCAGAGTTATTAATTGATTCAGACAAGTACTATCTTA
AAATGCTACCTGAAAGATTTGCGATAACCCTTAGTACTGCATTGGTAGAA
GTCTTATCGCGGCATACATCAGATGAAGTTTACTTGGGGCAGAGGCAATC
ATCAGAATGGACAGATGATCAGGAGGTTTTGCTAAAATTTGAAGAGTTCG
GTGAGAAGTTGAAAGAAATAGAGCAAAAAATCGTGGAGAGGAACAGAAAT
GCCAGGCTTAAGAACAGATGGGGACCTGCCAAGATAGCGTACAAACTTAT
GCATCCCGATACATCAAACGTCAAAAACGACGGAGGCCTCACAGGAAAAG
GTATCCCAAACAGTATATCCATTTAACGCAAGTTCAAGTACATTCAATAA
AAACTATTAAGCGCTTCTGGGTGTAAAAAAAAAAAAAAA
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