FC873643

Overview
NameFC873643
Unique NameFC873643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length846
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC873643 vs. ExPASy Swiss-Prot
Match: YCEI_BACSU (Putative metabolite transport protein yceI OS=Bacillus subtilis GN=yceI PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.769e-11
Identity = 48/165 (29.09%), Postives = 78/165 (47.27%), Query Frame = 3 
Query:   42 IRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCH 536
            IR T++L  ++F   F YYG+ L              +++LL+       +  V + +LA+LPG   +A ++++ GRK  + +                 ++L          F  G + V   Y PE YPT++RATG+G  +A GRIGG+  PL+ VG +   H
Sbjct:  214 IRPTVMLSIVWFCVVFSYYGMFLWLP-----------SVMLLKGFSMIQSFEYVLLMTLAQLPGYFSAAWLIEKAGRKWILVVYLIGTAGSAYFFGTADSLSLLLTAGVLLSFFNLGAWGVLYAYTPEQYPTAIRATGSGTTAAFGRIGGIFGPLL-VGTLAARH 366
The following BLAST results are available for this feature:
BLAST of FC873643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
YCEI_BACSU1.769e-1129.09Putative metabolite transport protein yceI OS=Baci... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3CB05FM1 AbsDev Citrus clementina cDNA clone KN0AAI3CB05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873643 ID=FC873643; Name=FC873643; organism=Citrus clementina; type=EST; length=846bp
CAGGATCCTCATCTTTTCTCATGCTGTTGTCATCAGAATTAATCAGAACT
ACCCTTCTGTTATGGTTTCTCTTCTTTGGAAATTCATTCGTATATTATGG
GGTTATATTGTTGACATCAGAATTAAATAGTGAGGAAGCCAGATGTGGCT
CAACTCTCTTGCTTTTGGAACATGCCCAGGATGCCAGCCTATACGTTAAT
GTATTTATCACTAGCTTGGCAGAACTTCCCGGGCTTCTGTTATCAGCAGT
GATTGTGGACAGAGTTGGACGCAAGATTTCCATGGCAATTATGTCCATTT
TGACTTTCATATTTCTTCTTCCACTGCTTATCCATCAACCTGTTACTTTA
ACAACAGTATTATTATTTGGAGCTCGAATGTTTGCCAATGGGACCTTTGC
CGTTGCTTGCGTGTATGCACCAGAGGTGTATCCAACCTCACTGAGGGCAA
CTGGTGCCGGCATTGCAAGTGCAGTGGGACGAATTGGGGGCATGGTGTGC
CCTCTAGTATCCGTTGGATTGGTGACCGGTTGCCATCAGACGGCTGCCAT
CTTTCTCTTGGCGGTTGTGATTGTTCTCTCAATAGTTTGCATACTTCTCT
TCCCATTTGAAACCAAGGGCAAAAGGATTGACTGACACCGTTGCTGTTGT
ATTCAATATGGTTTCAAGGGAAAAAAAAAAAAAAAAATCATTAATTTGCA
AACAGTTGTTCGTCTTCAGTCGATGCAGCGAGTCATTGGCTACTTTAACT
TAGAGCATGTGCCATTCTGTGGACAGGTGGGCAGGCGCTCTGCACATGCC
CGCGATCCCGATTATTTCATTTCTATAATAAGTGATACATGGATTT
back to top