FC873700

Overview
NameFC873700
Unique NameFC873700
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length861
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873700 vs. ExPASy Swiss-Prot
Match: CAN_YEAST (Carbonic anhydrase OS=Saccharomyces cerevisiae GN=NCE103 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.342e-13
Identity = 52/169 (30.77%), Postives = 77/169 (45.56%), Query Frame = 1
Query:  163 ADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDP--------SFIRSWVLVGKNARLNTKAASSSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVD 645
            A GQ+P  + I C+DSR    N LG  PGE F  +NVAN+   C S      A LEFA+  +KV  +++ GH+ CGGI   ++ Q E  P         ++     +      N     +     H  SHC   +V      ++  P ++  V+ G L ++G  YN  D
Sbjct:   45 AKGQSPHTLFIGCSDSRY-NENCLGVLPGEVFTWKNVANI---CHSEDLTLKATLEFAIICLKVNKVIICGHTDCGGIKTCLTNQREALPKVNCSHLYKYLDDIDTMYHEESQNLIHLKTQREKSHYLSHC---NVKRQFNRIIENPTVQTAVQNGELQVYGLLYNVED 206          
BLAST of FC873700 vs. ExPASy Swiss-Prot
Match: CAN_SHIFL (Carbonic anhydrase 2 OS=Shigella flexneri GN=can PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.658e-12
Identity = 38/114 (33.33%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  115 FKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVL 456
            + K    E+   ++ LA  Q P+F+ I C+DSRV    + G +PGE F+ RNVAN+V   +       + +++AV+ ++VE+I++ GH  CGG+ A +   +  +   I +W+L
Sbjct:   14 WSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTD---LNCLSVVQYAVDVLEVEHIIICGHYGCGGVQAAV---ENPELGLINNWLL 121          
BLAST of FC873700 vs. ExPASy Swiss-Prot
Match: CAN_ECOLI (Carbonic anhydrase 2 OS=Escherichia coli (strain K12) GN=can PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.658e-12
Identity = 38/114 (33.33%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  115 FKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVL 456
            + K    E+   ++ LA  Q P+F+ I C+DSRV    + G +PGE F+ RNVAN+V   +       + +++AV+ ++VE+I++ GH  CGG+ A +   +  +   I +W+L
Sbjct:   14 WSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTD---LNCLSVVQYAVDVLEVEHIIICGHYGCGGVQAAV---ENPELGLINNWLL 121          
BLAST of FC873700 vs. ExPASy Swiss-Prot
Match: CAN_SCHPO (Carbonic anhydrase OS=Schizosaccharomyces pombe GN=SPBP8B7.05c PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.128e-11
Identity = 39/118 (33.05%), Postives = 67/118 (56.78%), Query Frame = 1
Query:   55 AAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALM 408
            A +++   +  D ++ R L++ +Q   +    +    D Q P+ + I C+DSRV  + IL   PGE F+ RN+AN+VP  +       A +E++V  +KV++I+V GH  CGG+ A +
Sbjct:   32 AGKIDQNGEIKDLLE-RNLTWSQQTSRKYPSFFTATKDIQTPQVLWIGCSDSRVPETTILNLLPGEVFVHRNIANVVPRSD---INALAVMEYSVTVLKVKHIIVCGHYGCGGVAAAL 145          
The following BLAST results are available for this feature:
BLAST of FC873700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
CAN_YEAST3.342e-1330.77Carbonic anhydrase OS=Saccharomyces cerevisiae GN=... [more]
CAN_SHIFL1.658e-1233.33Carbonic anhydrase 2 OS=Shigella flexneri GN=can P... [more]
CAN_ECOLI1.658e-1233.33Carbonic anhydrase 2 OS=Escherichia coli (strain K... [more]
CAN_SCHPO3.128e-1133.05Carbonic anhydrase OS=Schizosaccharomyces pombe GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CE09FM1 AbsDev Citrus clementina cDNA clone KN0AAI3CE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873700 ID=FC873700; Name=FC873700; organism=Citrus clementina; type=EST; length=861bp
TGGAGACATTCTGAGGGAATCACTCAAGAATTTCAAGTTGACAAGCTGGA
GACTGCAGCAGAAGTTGAAAATGAATGTGATTTTTTTGATAAGATGAAAC
ATCGCTTTTTGAGCTTCAAAAAACAGAAATTCATGGAAAATTTAGAGCAT
TACCAAAATCTTGCGGATGGTCAAGCACCAAAGTTTATGGTGATTGCTTG
TGCGGACTCTAGAGTTTGTCCCTCAAACATCCTGGGATTTCAACCAGGAG
AGGCATTTATTGTCCGCAATGTTGCAAATATGGTGCCCCCGTGTGAGAGT
GGGCCCTCAGAAACAAATGCTGCACTGGAATTTGCCGTTAATTCTGTTAA
AGTTGAAAACATTTTAGTCATTGGCCACAGCCGCTGTGGAGGCATTCATG
CCCTTATGAGCATGCAGGATGAAGAAGATCCAAGTTTTATTAGAAGTTGG
GTTCTTGTGGGGAAGAATGCAAGGTTAAACACAAAAGCTGCTTCTTCCAG
CCTTAGCTTTGACCATCAGTGTTCACACTGTGAGAAGGAATCTGTAAATT
GTTCATTGTTAAACCTGCTCACTTATCCATGGATAGAAGAAAAAGTTAGG
GCAGGTGCTCTGTCTCTTCATGGTGGCTACTATAACTTCGTTGACTGCAC
ATTTGAGAAATGGACCCTGGATTATGATGGGAGCAATTTGAAGGAAAGTA
AAGAGGTTGCATTTAGAAACCGTTCCTTTTGGAGCTGATTTCCACTTGCA
TCATCTCCATGAAATAAGTTTCTTTTCTTTTTTCTCTTCTATTGTATGTG
ATTTATTCATAATTGTCGGACAAATGAAAAATAATGTTATCCCCTTTCCA
GGGGAATAACT
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