FC873721

Overview
NameFC873721
Unique NameFC873721
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length886
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.699e-82
Identity = 150/203 (73.89%), Postives = 168/203 (82.76%), Query Frame = 3
Query:  126 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKS--GCC 728
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKT+KLQIWDTAGQERFRTITSSYYRGAHGI +VYDVTD +SFNNVKQWL EIDRYA++ VNKLLVGNK D+T  KVV Y  AK FAD +GIPF+ETSAK+++NVEQAF+ MA  IK+RM S  + NN +       G  V+  S  GCC
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGSSIATNNTKASVNVSPGHGVSNNSSGGCC 203          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 1.026e-81
Identity = 153/201 (76.12%), Postives = 168/201 (83.58%), Query Frame = 3
Query:  126 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 728
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL+EIDRYA +NVNKLLVGNK DLTA +VVS + AK FA+ +GI F+ETSAK++ NVE+AFM MAA IK RMA+ P    A       +  P    S CC
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPVAPKAGVKLTPGQQVPSNGGSKCC 201          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 1.750e-81
Identity = 150/202 (74.26%), Postives = 170/202 (84.16%), Query Frame = 3
Query:  126 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM-ASQPSMNNARPPTVQIKGQPVAQKSGCC 728
            MNP+Y YLFKLLLIGDSGVGKSCLLLRFADD+Y ES+ISTIGVDFKIRT+E +GKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTD+ +F NV+QWL EIDR+A +NVNKLLVGNK DL A KVV + TAKAFAD + IPF+ETSAK STNVEQAFM MA  IK+R+ ASQP+    +   V     P++ KSGCC
Sbjct:    1 MNPDYHYLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRLTASQPTQTVDKNKVVPGSSAPISPKSGCC 202          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 300.827 bits (769), Expect = 6.648e-81
Identity = 148/208 (71.15%), Postives = 175/208 (84.13%), Query Frame = 3
Query:  126 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI-KDRMASQPSMNNARPPTVQIKGQPVAQK----SGCCST 734
            M+ E+DYLFKLLLIGDS VGKSC LLRFADDSY++SYISTIGVDFKIRTVE +GKT+KLQIWDTAGQERFRTITSSYYRGAHGIIIVYD+TD ESFNNVKQWL+EIDRYA+D+V KLLVGNKCDL  N+ V    A+A+A E+GIPF+ETSAK+S NVE+AF+AM+A+I K +  SQ ++       VQ+KG+P+ Q+    S CCST
Sbjct:    1 MSNEFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPSNVVQMKGRPIQQEQQKSSRCCST 208          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 3.299e-80
Identity = 149/202 (73.76%), Postives = 167/202 (82.67%), Query Frame = 3
Query:  126 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP-SMNNARPPTVQIKGQPVAQKSGCC 728
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT E +GKT+KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ+SFNNVKQWL EIDRYA + VN+LLVGNK D+   KVV Y  AK FAD + IPF+ETSAKDSTNVEQAF+ M+  IK+RM +   + +NA+      +G  V+Q S  C
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQGTNVSQSSSNC 202          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 292.352 bits (747), Expect = 2.365e-78
Identity = 148/201 (73.63%), Postives = 163/201 (81.09%), Query Frame = 3
Query:  126 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 728
            MNP YD LFKLLLIGDSGVGKSCLLLRFADD Y ESYISTIGVDFKI+T+E DGKTIKLQIWDTAGQERF TITSSYYRGAHG ++VYDVTDQES+ NVKQWL EIDR+AS+NVNKLLVGNK DLT  KVV   TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK +M    +    R P ++I   PV    G C
Sbjct:    1 MNPGYDCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 284.263 bits (726), Expect = 6.439e-76
Identity = 142/203 (69.95%), Postives = 158/203 (77.83%), Query Frame = 3
Query:  126 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKG---QPVAQKSGC 725
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+  DGK IKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTD  SFNNVKQW+ EI RYA D+V +LLVGNKCDL   K+V   TA+ +AD +GIPF+ETSAK S NVEQAFM MA+ IK         NN+      +K     P+ +K  C
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKKLQGGIQPNNNSTYNAHVVKPTGFTPIGKKKKC 203          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 280.411 bits (716), Expect = 9.298e-75
Identity = 143/206 (69.42%), Postives = 160/206 (77.67%), Query Frame = 3
Query:  126 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPP-----TVQIKGQPVAQKSGCC 728
            MN EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y   YISTIGVDFKI+TVE DGKT+KLQIWDTAGQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+  V KLLVGNKCDL   +VV Y+ AK FAD   +PF+ETSA DSTNVE AF+ MA  IK+ M SQ ++N           V +KGQ +    G C
Sbjct:    1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM-SQQNLNETTQKKEDKGNVNLKGQSLTNTGGGC 205          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 2.144e-71
Identity = 133/200 (66.50%), Postives = 160/200 (80.00%), Query Frame = 3
Query:  123 TMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSG 722
            +M PE+D+ FK+LLIGDSGVGKSCLLLRFADDS+ +++ISTIGVDFKI+T+  DGKTIKLQIWDTAGQERFRTITSSYYRGA GII+VYD TDQ+SF NVKQW+ EIDRYA +NVNKLLVGNK DL   KVV    AK+FA+  GIPF+ETSAK++TNVE+ F++MA  IK+R+A        +P  V IK +   +  G
Sbjct:    2 SMAPEHDFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLAD--IQETPKPDEVDIKSKNKTKSGG 199          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 6.041e-66
Identity = 122/207 (58.94%), Postives = 158/207 (76.33%), Query Frame = 3
Query:  117 STTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQ---IKGQPVAQKSGCC 728
            +T  +  YDYL KLLLIGDSGVGKSCLLLRF++DS+  S+I+TIG+DFKIRT+E +GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD++SF N++ W+  I+++A+D+VNK+L+GNKCD+   KVV     K+ ADE GI F+ETSAK+S NVE+AF+++A  IK RM   P   N +P  VQ     G    +K  CC
Sbjct:    5 ATNKSAAYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTP---NEQPQVVQPGTNLGANNNKKKACC 208          
The following BLAST results are available for this feature:
BLAST of FC873721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT1_NEUCR2.699e-8273.89GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
YPT1_PHYIN1.026e-8176.12Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB1A_DICDI1.750e-8174.26Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
YPTM1_MAIZE6.648e-8171.15GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
YPT1_SCHPO3.299e-8073.76GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RAB1C_HUMAN2.365e-7873.63Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RAB1B_DICDI6.439e-7669.95Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
YPT1_YEAST9.298e-7569.42GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB1D_DICDI2.144e-7166.50Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB8A_DICDI6.041e-6658.94Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CG11FM1 AbsDev Citrus clementina cDNA clone KN0AAI3CG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873721 ID=FC873721; Name=FC873721; organism=Citrus clementina; type=EST; length=886bp
TGTCTTCTGTTTTTGTTGACATTTAATTTCCCGGCGAAACTCATATCACG
AGATCTCGCCGAAGATAATAATCTGTTTTGGTTAACCGAACCCGAAGCTT
TTTTCTTTTACACAAATCTACGACGATGAATCCTGAATATGACTATCTGT
TTAAGCTTCTGCTTATTGGAGATTCCGGTGTTGGCAAATCTTGTCTTCTC
TTGAGATTTGCTGATGATTCATATATTGAGAGTTACATCAGCACCATAGG
AGTTGATTTTAAAATACGCACTGTTGAGCAAGATGGGAAGACCATTAAAC
TTCAAATTTGGGATACTGCTGGTCAAGAAAGATTTAGGACAATCACCAGC
AGCTACTACCGTGGGGCACATGGTATCATAATTGTTTATGATGTGACAGA
CCAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACCGTT
ATGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGATCTC
ACTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGATGA
AATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCAACGTGG
AACAGGCATTCATGGCCATGGCTGCTTCAATCAAGGATAGAATGGCAAGT
CAACCATCCATGAACAATGCAAGGCCTCCAACTGTACAGATCAAAGGGCA
GCCTGTTGCACAGAAGAGTGGCTGCTGCTCTACTTAAGTATCATTGACCA
ACACTCAGAAGATGATCCCCCTTCAGTCCCTTTGTGGTTTATGAAAAAGG
CTGTACAAAGTAGAAATGCTAATTTGATGTTAGTATTCTTCTTTCTGTCC
CTATCTTTATTGGGAATTGGCCTTAATAGCATGTTT
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