FC873721

Overview
NameFC873721
Unique NameFC873721
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length886
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RASK_RIVMA (GTPase KRas OS=Rivulus marmoratus GN=kras PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.919e-21
Identity = 60/182 (32.97%), Postives = 99/182 (54.40%), Query Frame = 3
Query:  150 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI---KDRMASQPSMNNARPPT 683
            +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNK DL   + V  + A+  A   GIPF+ETSAK    V+ AF  +   I   K++M+ +      +  T
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKYDL-PTRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKEGKKKKKKSKT 183          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAP1B_PONAB (Ras-related protein Rap-1b OS=Pongo abelii GN=RAP1B PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.919e-21
Identity = 58/163 (35.58%), Postives = 91/163 (55.83%), Query Frame = 3
Query:  150 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASI 632
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVGNKCDL   +VV  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAP1B_PANTR (Ras-related protein Rap-1b OS=Pan troglodytes GN=RAP1B PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.919e-21
Identity = 58/163 (35.58%), Postives = 91/163 (55.83%), Query Frame = 3
Query:  150 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASI 632
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVGNKCDL   +VV  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAP1B_MOUSE (Ras-related protein Rap-1b OS=Mus musculus GN=Rap1b PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.919e-21
Identity = 58/163 (35.58%), Postives = 91/163 (55.83%), Query Frame = 3
Query:  150 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASI 632
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVGNKCDL   +VV  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAP1B_MACFA (Ras-related protein Rap-1b OS=Macaca fascicularis GN=RAP1B PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.919e-21
Identity = 58/163 (35.58%), Postives = 91/163 (55.83%), Query Frame = 3
Query:  150 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASI 632
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVGNKCDL   +VV  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAP1B_HUMAN (Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1B PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.919e-21
Identity = 58/163 (35.58%), Postives = 91/163 (55.83%), Query Frame = 3
Query:  150 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASI 632
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVGNKCDL   +VV  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAP1B_CHICK (Ras-related protein Rap-1b OS=Gallus gallus GN=RAP1B PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.919e-21
Identity = 58/163 (35.58%), Postives = 91/163 (55.83%), Query Frame = 3
Query:  150 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASI 632
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVGNKCDL   +VV  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAP1B_BOVIN (Ras-related protein Rap-1b OS=Bos taurus GN=RAP1B PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.919e-21
Identity = 58/163 (35.58%), Postives = 91/163 (55.83%), Query Frame = 3
Query:  150 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASI 632
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVGNKCDL   +VV  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RBL2B_HUMAN (Rab-like protein 2B OS=Homo sapiens GN=RABL2B PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.731e-21
Identity = 60/172 (34.88%), Postives = 94/172 (54.65%), Query Frame = 3
Query:  153 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM-AMAASIKDRMASQPSMN 665
            K++ +GDS VGKS L+ RF  D +    +ST  +     T   DG+TI +  WDTAGQERF+++ +SYY  AH  I+V+DV  + ++ N+  W  E+  +  + +  ++V NK D       S+  AK F+    +P    SA D TNV + F  A+  ++  +  SQ  M+
Sbjct:   23 KIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYKHTATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTELREFRPE-IPCIVVANKIDDINVTQKSFNFAKKFS----LPLYFVSAADGTNVVKLFNDAIRLAVSYKQNSQDFMD 189          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAS_ARTSA (Ras-like protein (Fragment) OS=Artemia salina PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.731e-21
Identity = 61/175 (34.86%), Postives = 93/175 (53.14%), Query Frame = 3
Query:  177 GVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI-KDRMASQPSMNNARPPTVQIK 695
            GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G ++V+ V + +SF ++  +  +I R   ++ V  +LVGNKCDL   + V    A+  A + GIPF+ETSAK    V+  F  +   I KD+M    S    R    Q+K
Sbjct:    2 GVGKSALTIQLIQNHFVDEYDPTIEDSYRQQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNNAKSFEDISAYREQIKRVKDAEEVPMVLVGNKCDL-PTRAVDMSQAREVARQYGIPFVETSAKTRMGVDDGFYTLVREIKKDKMKKGNSSRRGRSGRKQLK 174          
The following BLAST results are available for this feature:
BLAST of FC873721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASK_RIVMA5.919e-2132.97GTPase KRas OS=Rivulus marmoratus GN=kras PE=2 SV=... [more]
RAP1B_PONAB5.919e-2135.58Ras-related protein Rap-1b OS=Pongo abelii GN=RAP1... [more]
RAP1B_PANTR5.919e-2135.58Ras-related protein Rap-1b OS=Pan troglodytes GN=R... [more]
RAP1B_MOUSE5.919e-2135.58Ras-related protein Rap-1b OS=Mus musculus GN=Rap1... [more]
RAP1B_MACFA5.919e-2135.58Ras-related protein Rap-1b OS=Macaca fascicularis ... [more]
RAP1B_HUMAN5.919e-2135.58Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1... [more]
RAP1B_CHICK5.919e-2135.58Ras-related protein Rap-1b OS=Gallus gallus GN=RAP... [more]
RAP1B_BOVIN5.919e-2135.58Ras-related protein Rap-1b OS=Bos taurus GN=RAP1B ... [more]
RBL2B_HUMAN7.731e-2134.88Rab-like protein 2B OS=Homo sapiens GN=RABL2B PE=2... [more]
RAS_ARTSA7.731e-2134.86Ras-like protein (Fragment) OS=Artemia salina PE=3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CG11FM1 AbsDev Citrus clementina cDNA clone KN0AAI3CG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873721 ID=FC873721; Name=FC873721; organism=Citrus clementina; type=EST; length=886bp
TGTCTTCTGTTTTTGTTGACATTTAATTTCCCGGCGAAACTCATATCACG
AGATCTCGCCGAAGATAATAATCTGTTTTGGTTAACCGAACCCGAAGCTT
TTTTCTTTTACACAAATCTACGACGATGAATCCTGAATATGACTATCTGT
TTAAGCTTCTGCTTATTGGAGATTCCGGTGTTGGCAAATCTTGTCTTCTC
TTGAGATTTGCTGATGATTCATATATTGAGAGTTACATCAGCACCATAGG
AGTTGATTTTAAAATACGCACTGTTGAGCAAGATGGGAAGACCATTAAAC
TTCAAATTTGGGATACTGCTGGTCAAGAAAGATTTAGGACAATCACCAGC
AGCTACTACCGTGGGGCACATGGTATCATAATTGTTTATGATGTGACAGA
CCAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACCGTT
ATGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGATCTC
ACTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGATGA
AATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCAACGTGG
AACAGGCATTCATGGCCATGGCTGCTTCAATCAAGGATAGAATGGCAAGT
CAACCATCCATGAACAATGCAAGGCCTCCAACTGTACAGATCAAAGGGCA
GCCTGTTGCACAGAAGAGTGGCTGCTGCTCTACTTAAGTATCATTGACCA
ACACTCAGAAGATGATCCCCCTTCAGTCCCTTTGTGGTTTATGAAAAAGG
CTGTACAAAGTAGAAATGCTAATTTGATGTTAGTATTCTTCTTTCTGTCC
CTATCTTTATTGGGAATTGGCCTTAATAGCATGTTT
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