FC873721

Overview
NameFC873721
Unique NameFC873721
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length886
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RASN_DANRE (GTPase NRas OS=Danio rerio GN=nras PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.731e-21
Identity = 59/163 (36.20%), Postives = 91/163 (55.83%), Query Frame = 3
Query:  150 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 635
            +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF +V  +  +I R   SD+V  +LVGN CDL   + V  + A+  A   GI F+ETSAK    VE AF  +   I+
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADVHLYREQIKRVKDSDDVPMVLVGNICDLA--RTVDTKQAQELARSYGIEFVETSAKTRQGVEDAFYTLVREIR 163          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: DJ27A_XENLA (DnaJ homolog subfamily C member 27-A OS=Xenopus laevis GN=dnajc27-A PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.731e-21
Identity = 49/167 (29.34%), Postives = 93/167 (55.69%), Query Frame = 3
Query:  153 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-----DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 638
            K++ +G++ VGKSC++ R+ +  ++  Y +TIG+D+ +  V    + IK+ I+D AG   F  + + +Y+   G+I+VYDV  +E+F ++  WL E+ +        DN+   +  NK D T ++ V     + +++  G  + ETSA+    + + F A  ++I D
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVPKYQATIGIDYGVTKVHIKDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGHKETFESLDGWLAEMKQELGPQGNIDNIVFAVCANKIDSTKHRSVDESEGRLWSESKGFLYFETSAQSGEGINEMFQAFYSAIVD 184          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RASU_DICDI (Ras-like protein rasU OS=Dictyostelium discoideum GN=rasU PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.010e-20
Identity = 53/173 (30.64%), Postives = 93/173 (53.76%), Query Frame = 3
Query:  153 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNA 671
            +L ++GD GVGK+ + ++F  + ++  Y  TI  D   +    D +   L I DTAGQ+    I + + +   G I+VY VT + SF+ ++ +L++I    S+ V  +++ NK DL   + V+Y+  + FA+  G+ FME SAK   N+++ F  +A     R      +N +
Sbjct:   16 RLCVMGDGGVGKTSITIQFISNHFVNCYDPTIE-DLYRKQCLIDDQVYMLDILDTAGQDELNAIRNHWIKSCEGFILVYSVTSRSSFDQIQSFLDQIKFLKSEKVPIIMIANKSDLDDERQVTYQEGENFANRFGMSFMEVSAKYKLNIDEVFNQIAQHCVKRRCDHIYINKS 187          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RASK_XENLA (GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.010e-20
Identity = 57/163 (34.97%), Postives = 93/163 (57.06%), Query Frame = 3
Query:  150 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 635
            +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKC L  ++ V  + A+  A   GIPF+ETSAK    V+ AF  +   I+
Sbjct:    4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNIKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCAL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 164          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAB24_DICDI (Ras-related protein Rab-24 OS=Dictyostelium discoideum GN=rab24 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.010e-20
Identity = 62/196 (31.63%), Postives = 99/196 (50.51%), Query Frame = 3
Query:  153 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN---KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPP-TVQIKGQPVAQKSGCC 728
            K++L+G + VGK+C++ R+    + +++ +TIG  F  + V      + L IWDTAG ER++ +  SYYR A+  I+ YD+T++ES+  V  W  E+ +   + +   +VG K DL      K V  E  K  A        ETS++   NV   F  +A     R  +  +  N+ P   V +  Q   +K GCC
Sbjct:    9 KVVLLGYASVGKTCIVTRYTSGQFGDTH-TTIGGAFSSKRVVVGETEVLLGIWDTAGTERYQAVNVSYYRRANAAIVCYDLTNRESWEKVTFWAEELTQNEPE-IEIYIVGTKLDLIQQGDIKAVPEEEVKQTARRYKAHIFETSSRTGENVSLLFQTIAEDFCKRTNNGTNPVNSNPSNVVNVNTQTQKKKGGCC 202          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RP1BL_HUMAN (Ras-related protein Rap-1b-like protein OS=Homo sapiens PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.319e-20
Identity = 58/163 (35.58%), Postives = 90/163 (55.21%), Query Frame = 3
Query:  150 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASI 632
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++   VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVGNKCDL   +VV  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct:    4 YKLVVLGSRGVGKSALTVQFVQGIFVEKYDPTIEDSYR-EQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RB32D_DICDI (Ras-related protein Rab-32D OS=Dictyostelium discoideum GN=rab32D PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.319e-20
Identity = 58/184 (31.52%), Postives = 99/184 (53.80%), Query Frame = 3
Query:  153 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---------LLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI--KDRMASQPSMNNA 671
            KL+LIGD  VGK+ +L R     + E Y STIG DF  +T  Q+     +Q+WDTAGQE++  +TS+++R +  +I+V+D++++ SF N+  W  +   + S ++N          LL+ NK D     V   E  +   D     + E SAK S N++++ + +   I  +D+ +     N++
Sbjct:   11 KLILIGDVNVGKTSILHRLIFSKFTEEYKSTIGADFLSKTFYQNDIITHIQLWDTAGQEKYWCLTSAFWRTSDAVILVFDISNESSFRNLNFWYKQ---FKSKSINPDGTEKQLPILLLANKSDSLTRAVDQSEINQWCTDHKVNLYYEVSAKSSINIKESILKLVEVIIEQDKDSDNEQFNDS 191          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RASM_HUMAN (Ras-related protein M-Ras OS=Homo sapiens GN=MRAS PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.319e-20
Identity = 61/167 (36.53%), Postives = 94/167 (56.29%), Query Frame = 3
Query:  150 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD-STNVEQAFMAMAASIKDRM 644
            +KL+++GD GVGKS L ++F    ++  Y  TI  D  ++  E D +   L + DTAGQE F  +   Y R   G +IVY VTD+ SF +V ++   I R    ++   +LV NK DL   + ++ E  K  A +  IP++ETSAKD   NV++AF  +   I+ ++
Sbjct:   14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKITREQGKEMATKHNIPYIETSAKDPPLNVDKAFHDLVRVIRQQI 179          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.319e-20
Identity = 56/185 (30.27%), Postives = 98/185 (52.97%), Query Frame = 3
Query:  135 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQ 689
            E   +FKL+LIGD G GK+ L+ R     +   Y +T+GV+ +      +    ++ +WDTAGQER+  +   Y+  +   II++DV    ++NNVK+W  ++ R    N+  ++ GNK D+   K  +++    F  +  I  +E SAK + NVE+ F+ +      ++   PS+   + P +Q
Sbjct:    6 EVKAIFKLILIGDGGTGKTTLVKRHLTGEFKMQYNATLGVEVEQLLFNTNRGVFRIDVWDTAGQERYGGLRDGYFVQSQCAIIMFDVASSNTYNNVKRWHRDLVRVCG-NIPIVICGNKVDIMHKK--TWKKGVDFDRKTNIYLIEMSAKSNYNVEKPFVYLLR----KLVGDPSLQLVQSPAIQ 183          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: GSP1_YEAST (GTP-binding nuclear protein GSP1/CNR1 OS=Saccharomyces cerevisiae GN=GSP1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.319e-20
Identity = 62/193 (32.12%), Postives = 100/193 (51.81%), Query Frame = 3
Query:  150 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN-----NARPPTVQIKGQPVAQ 713
            FKL+L+GD G GK+  + R     + + YI+TIGV+    +   +   IK  +WDTAGQE+F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GNK D+   KV +      F  +  + + + SAK + N E+ F+ +A     ++A  P +         PP VQ+  Q + Q
Sbjct:   13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR----KLAGNPQLEFVASPALAPPEVQVDEQLMQQ 198          
The following BLAST results are available for this feature:
BLAST of FC873721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASN_DANRE7.731e-2136.20GTPase NRas OS=Danio rerio GN=nras PE=2 SV=1[more]
DJ27A_XENLA7.731e-2129.34DnaJ homolog subfamily C member 27-A OS=Xenopus la... [more]
RASU_DICDI1.010e-2030.64Ras-like protein rasU OS=Dictyostelium discoideum ... [more]
RASK_XENLA1.010e-2034.97GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1[more]
RAB24_DICDI1.010e-2031.63Ras-related protein Rab-24 OS=Dictyostelium discoi... [more]
RP1BL_HUMAN1.319e-2035.58Ras-related protein Rap-1b-like protein OS=Homo sa... [more]
RB32D_DICDI1.319e-2031.52Ras-related protein Rab-32D OS=Dictyostelium disco... [more]
RASM_HUMAN1.319e-2036.53Ras-related protein M-Ras OS=Homo sapiens GN=MRAS ... [more]
RANL_DROME1.319e-2030.27GTP-binding nuclear protein Ran-like OS=Drosophila... [more]
GSP1_YEAST1.319e-2032.12GTP-binding nuclear protein GSP1/CNR1 OS=Saccharom... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CG11FM1 AbsDev Citrus clementina cDNA clone KN0AAI3CG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873721 ID=FC873721; Name=FC873721; organism=Citrus clementina; type=EST; length=886bp
TGTCTTCTGTTTTTGTTGACATTTAATTTCCCGGCGAAACTCATATCACG
AGATCTCGCCGAAGATAATAATCTGTTTTGGTTAACCGAACCCGAAGCTT
TTTTCTTTTACACAAATCTACGACGATGAATCCTGAATATGACTATCTGT
TTAAGCTTCTGCTTATTGGAGATTCCGGTGTTGGCAAATCTTGTCTTCTC
TTGAGATTTGCTGATGATTCATATATTGAGAGTTACATCAGCACCATAGG
AGTTGATTTTAAAATACGCACTGTTGAGCAAGATGGGAAGACCATTAAAC
TTCAAATTTGGGATACTGCTGGTCAAGAAAGATTTAGGACAATCACCAGC
AGCTACTACCGTGGGGCACATGGTATCATAATTGTTTATGATGTGACAGA
CCAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACCGTT
ATGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGATCTC
ACTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGATGA
AATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCAACGTGG
AACAGGCATTCATGGCCATGGCTGCTTCAATCAAGGATAGAATGGCAAGT
CAACCATCCATGAACAATGCAAGGCCTCCAACTGTACAGATCAAAGGGCA
GCCTGTTGCACAGAAGAGTGGCTGCTGCTCTACTTAAGTATCATTGACCA
ACACTCAGAAGATGATCCCCCTTCAGTCCCTTTGTGGTTTATGAAAAAGG
CTGTACAAAGTAGAAATGCTAATTTGATGTTAGTATTCTTCTTTCTGTCC
CTATCTTTATTGGGAATTGGCCTTAATAGCATGTTT
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