FC873721

Overview
NameFC873721
Unique NameFC873721
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length886
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.706e-52
Identity = 94/173 (54.34%), Postives = 129/173 (74.57%), Query Frame = 3
Query:  123 TMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 641
            T +  YD + KLLL+GDSGVGKSCLLLRF +D +  S+I+TIG+DFKIRT+E  GK IKLQ+WDTAGQERFRTIT++YYRGA GI+++YDVTD  SF NV+ W   + ++A+++    LVGNKCD   N+ VS E  +  A ++ +PF+E SAK + NV+  F  +A+ I+++
Sbjct:    6 TSSRAYDMIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELASIIQEK 178          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RABG2_DICDI (Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 2.229e-52
Identity = 102/176 (57.95%), Postives = 135/176 (76.70%), Query Frame = 3
Query:  147 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI-KDRM-ASQPSMNN 668
            +FK+LLIGDS VGK+ LLLRFAD+S+ E+ ++   VD+K + +  DG+T  LQIWDTAGQERFRTITSS+YRGAHG+++ YDVTDQ ++NNV+ W+ EI RYA   V+++LVGNKCDL   K+V+   A+ +AD +GIPFME SA    NVE+AFMAMA  I ++ M  S+PS+ N
Sbjct:    6 VFKILLIGDSAVGKTSLLLRFADNSFQETSVNMTSVDYKNKNIVIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVRLWMQEIQRYAVLGVSRVLVGNKCDLEDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEIYRNHMGGSKPSVVN 181          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 8.469e-52
Identity = 92/202 (45.54%), Postives = 143/202 (70.79%), Query Frame = 3
Query:  138 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA----SQPSMNNARPPTVQIKGQPVAQKSGCCS 731
            +DY+FKLL+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV +  K +KLQIWDTAGQER+RTIT++YYRGA G I++YDVT+++SFN+V+ W+ +I  Y+ DN   +LVGNKCD+   +V+S+E  +  AD++G+ F ETSAK++ NV+  F  +   I D+M+    + P++        ++  QP    +  C+
Sbjct:   18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSESLDADPTLVGGGQKGQRLTDQPQGTPNANCN 219          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.218e-51
Identity = 101/198 (51.01%), Postives = 138/198 (69.70%), Query Frame = 3
Query:  138 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI-KDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 728
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTI +DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID++A+++V ++L+ NKCD+   +VV     +  A E  I F ETSAK + N+E+AF+ +   I +     +P+  N     +   G     KS CC
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIEIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHANEDVERMLLRNKCDMDHKRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTLPEDILRKTPVKEPNSENV---DISSGGGVTGWKSKCC 200          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.203e-51
Identity = 94/189 (49.74%), Postives = 135/189 (71.43%), Query Frame = 3
Query:  138 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQP 704
            +DY+FK+L+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++T+ ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ DN   LLVGNKCD+   +VVS E  +  AD +G  F E SAKD+ NV+Q F  +   I ++M+   S++ A P     K  P
Sbjct:   19 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSE--SLDTADPAVTGAKQGP 205          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.203e-51
Identity = 94/189 (49.74%), Postives = 135/189 (71.43%), Query Frame = 3
Query:  138 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQP 704
            +DY+FK+L+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++T+ ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ DN   LLVGNKCD+   +VVS E  +  AD +G  F E SAKD+ NV+Q F  +   I ++M+   S++ A P     K  P
Sbjct:   19 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSE--SLDTADPAVTGAKQGP 205          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.203e-51
Identity = 94/189 (49.74%), Postives = 135/189 (71.43%), Query Frame = 3
Query:  138 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQP 704
            +DY+FK+L+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++T+ ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ DN   LLVGNKCD+   +VVS E  +  AD +G  F E SAKD+ NV+Q F  +   I ++M+   S++ A P     K  P
Sbjct:   19 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSE--SLDTADPAVTGAKQGP 205          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.203e-51
Identity = 94/189 (49.74%), Postives = 135/189 (71.43%), Query Frame = 3
Query:  138 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQP 704
            +DY+FK+L+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++T+ ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ DN   LLVGNKCD+   +VVS E  +  AD +G  F E SAKD+ NV+Q F  +   I ++M+   S++ A P     K  P
Sbjct:   19 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSE--SLDTADPAVTGAKQGP 205          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAB3A_HUMAN (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.203e-51
Identity = 94/189 (49.74%), Postives = 135/189 (71.43%), Query Frame = 3
Query:  138 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQP 704
            +DY+FK+L+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++T+ ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ DN   LLVGNKCD+   +VVS E  +  AD +G  F E SAKD+ NV+Q F  +   I ++M+   S++ A P     K  P
Sbjct:   19 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSE--SLDTADPAVTGAKQGP 205          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAB3A_BOVIN (Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 4.203e-51
Identity = 94/189 (49.74%), Postives = 135/189 (71.43%), Query Frame = 3
Query:  138 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQP 704
            +DY+FK+L+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++T+ ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ DN   LLVGNKCD+   +VVS E  +  AD +G  F E SAKD+ NV+Q F  +   I ++M+   S++ A P     K  P
Sbjct:   19 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSE--SLDTADPAVTGAKQGP 205          
The following BLAST results are available for this feature:
BLAST of FC873721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SEC4_CANAL1.706e-5254.34Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RABG2_DICDI2.229e-5257.95Ras-related protein RabG2 OS=Dictyostelium discoid... [more]
RAB3_DROME8.469e-5245.54Ras-related protein Rab-3 OS=Drosophila melanogast... [more]
RAB10_RAT3.218e-5151.01Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
RAB3A_RAT4.203e-5149.74Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG4.203e-5149.74Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]
RAB3A_MOUSE4.203e-5149.74Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_MACFA4.203e-5149.74Ras-related protein Rab-3A OS=Macaca fascicularis ... [more]
RAB3A_HUMAN4.203e-5149.74Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
RAB3A_BOVIN4.203e-5149.74Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CG11FM1 AbsDev Citrus clementina cDNA clone KN0AAI3CG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873721 ID=FC873721; Name=FC873721; organism=Citrus clementina; type=EST; length=886bp
TGTCTTCTGTTTTTGTTGACATTTAATTTCCCGGCGAAACTCATATCACG
AGATCTCGCCGAAGATAATAATCTGTTTTGGTTAACCGAACCCGAAGCTT
TTTTCTTTTACACAAATCTACGACGATGAATCCTGAATATGACTATCTGT
TTAAGCTTCTGCTTATTGGAGATTCCGGTGTTGGCAAATCTTGTCTTCTC
TTGAGATTTGCTGATGATTCATATATTGAGAGTTACATCAGCACCATAGG
AGTTGATTTTAAAATACGCACTGTTGAGCAAGATGGGAAGACCATTAAAC
TTCAAATTTGGGATACTGCTGGTCAAGAAAGATTTAGGACAATCACCAGC
AGCTACTACCGTGGGGCACATGGTATCATAATTGTTTATGATGTGACAGA
CCAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACCGTT
ATGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGATCTC
ACTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGATGA
AATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCAACGTGG
AACAGGCATTCATGGCCATGGCTGCTTCAATCAAGGATAGAATGGCAAGT
CAACCATCCATGAACAATGCAAGGCCTCCAACTGTACAGATCAAAGGGCA
GCCTGTTGCACAGAAGAGTGGCTGCTGCTCTACTTAAGTATCATTGACCA
ACACTCAGAAGATGATCCCCCTTCAGTCCCTTTGTGGTTTATGAAAAAGG
CTGTACAAAGTAGAAATGCTAATTTGATGTTAGTATTCTTCTTTCTGTCC
CTATCTTTATTGGGAATTGGCCTTAATAGCATGTTT
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