FC873743

Overview
NameFC873743
Unique NameFC873743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length771
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873743_ssr41 microsatellite FC873743_ssr41:41..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5940 contig Ccv1_Contig5940:15..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: KSG8_ARATH (Shaggy-related protein kinase theta OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=3)

HSP 1 Score: 280.026 bits (715), Expect = 9.770e-75
Identity = 128/177 (72.32%), Postives = 154/177 (87.01%), Query Frame = 3
Query:  231 DKEMSAAVIQGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHRL 761
            DK+M   V+ G+   TG +I+TT+GG++G+PKQTISYMA+RVVGTGSFG+VFQAKCLETGE VAIKKVLQD+RYKNRELQ+MRL DHPNV+ L+H FFSTT KDEL+LNLV+EYVPET+YR  KHY+ MNQ MP+I+V+LYTYQI R L Y+H V GVCHRD+KPQNLLV+P TH+L
Sbjct:  102 DKDMETTVVNGSGTETGQVITTTVGGRDGKPKQTISYMAQRVVGTGSFGVVFQAKCLETGEQVAIKKVLQDKRYKNRELQIMRLQDHPNVVRLRHSFFSTTDKDELYLNLVLEYVPETVYRASKHYTKMNQHMPIIFVQLYTYQICRALNYLHRVVGVCHRDIKPQNLLVNPQTHQL 278          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: KSGT_BRANA (Shaggy-related protein kinase theta OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 7.002e-73
Identity = 126/179 (70.39%), Postives = 153/179 (85.47%), Query Frame = 3
Query:  225 DSDKEMSAAVIQGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHRL 761
            + DK+M   ++ G    TG +I+TT+GG++G+PKQTISYMA+RVVGTGSFG+VFQAKCLETGE VAIKKVLQD+RYKNRELQ+MRL DHPNV+ L+H FFSTT KDEL+LNLV+E+VPET+YR LKHY+ MNQ MP+I V+LYTYQI R L Y+H V GVCHRD+KPQNLLV+  TH+L
Sbjct:   96 EEDKDMEPPIVNGCGTETGQVITTTVGGRDGKPKQTISYMAQRVVGTGSFGVVFQAKCLETGEQVAIKKVLQDKRYKNRELQIMRLQDHPNVVRLRHSFFSTTDKDELYLNLVLEFVPETVYRALKHYTKMNQHMPIILVQLYTYQICRALNYLHRVVGVCHRDIKPQNLLVNTHTHQL 274          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: KSG4_ARATH (Shaggy-related protein kinase delta OS=Arabidopsis thaliana GN=ASK4 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.973e-67
Identity = 117/185 (63.24%), Postives = 151/185 (81.62%), Query Frame = 3
Query:  207 RHRPDMDSDKEMSAAVIQGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHRL 761
            R + + D +++    +I G  A  GH+I+TT+ G+NG+ +QT+SY+AE VVGTGSFG+VFQAKC ETGE VAIKKVLQD+RYKNRELQ+M+++DHPNV+ LKH F+S T  +E++LNLV+E+VPET+ R  + YS MNQ MPLIYVKLYTYQI RGLAY+H   G+CHRD+KPQNLLV+P TH+L
Sbjct:   38 RDKTEADEERDSEPDIIDGVGAEPGHVITTTLPGRNGQSRQTVSYIAEHVVGTGSFGMVFQAKCRETGEVVAIKKVLQDKRYKNRELQIMQMLDHPNVVCLKHSFYSRTENEEVYLNLVLEFVPETVNRTARSYSRMNQLMPLIYVKLYTYQICRGLAYLHNCCGLCHRDIKPQNLLVNPHTHQL 222          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: KSG10_ARATH (Shaggy-related protein kinase kappa OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 4.860e-66
Identity = 116/185 (62.70%), Postives = 149/185 (80.54%), Query Frame = 3
Query:  207 RHRPDMDSDKEMSAAVIQGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHRL 761
            R + + D +++    +I G  A  GH+I TT+ G+NG+ +QT+SY++E VVGTGSFG+VFQAKC ETGE VAIKKVLQD+RYKNRELQ+M+++DHPN ++LKH FFS T  +E++LNLV+E+VPET+ RV + YS  NQ MPLIYVKLYTYQI R LAYIH   G+CHRD+KPQNLLV+P TH+L
Sbjct:   39 RDKVETDDERDSEPDIIDGAGAEPGHVIRTTLRGRNGQSRQTVSYISEHVVGTGSFGMVFQAKCRETGEVVAIKKVLQDKRYKNRELQIMQMLDHPNAVALKHSFFSRTDNEEVYLNLVLEFVPETVNRVARSYSRTNQLMPLIYVKLYTYQICRALAYIHNSFGLCHRDIKPQNLLVNPHTHQL 223          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: KSG2_ARATH (Shaggy-related protein kinase beta OS=Arabidopsis thaliana GN=ASK2 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.150e-65
Identity = 115/176 (65.34%), Postives = 143/176 (81.25%), Query Frame = 3
Query:  234 KEMSAAVIQGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHRL 761
            ++M   +I+GN   +G II+T   G N +  +TISY AE V+GTGSFG+VFQAKCLET E VAIKKVLQD+RYKNRELQ+MR++DHPNV+ LKH FFSTT KDEL+LNLV+EYVPET+YR  + Y+ MNQ MPLIY++LYTYQI R + Y+H V GVCHRD+KPQNLLV+ +TH +
Sbjct:   67 EDMDCGIIKGNGTESGRIITTKKKGLNDQKDKTISYRAEHVIGTGSFGVVFQAKCLETEEKVAIKKVLQDKRYKNRELQIMRMLDHPNVVELKHSFFSTTEKDELYLNLVLEYVPETIYRASRSYTKMNQHMPLIYIQLYTYQICRAMNYLHQVVGVCHRDIKPQNLLVNNVTHEV 242          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: GSK3_CAEEL (Glycogen synthase kinase-3 OS=Caenorhabditis elegans GN=gsk-3 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.423e-49
Identity = 93/173 (53.76%), Postives = 131/173 (75.72%), Query Frame = 3
Query:  231 DKEMSAAVIQGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFST-TSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDP 746
            +K++ +  ++    VT  + S    G + + +  ISY  ++V+G GSFG+VF AK   T E VAIKKVLQD+R+KNRELQ+MR ++HPN++ LK+ F+S+   KDEL+LNL++EYVPET+YRV +HYS   Q++P+IYVKLY YQ+ R LAYIH++ G+CHRD+KPQNLL+DP
Sbjct:    2 NKQLLSCSLKSGKQVTMVVASVATDGVDQQVE--ISYYDQKVIGNGSFGVVFLAKLSTTNEMVAIKKVLQDKRFKNRELQIMRKLNHPNIVKLKYFFYSSGEKKDELYLNLILEYVPETVYRVARHYSKQRQQIPMIYVKLYMYQLLRSLAYIHSI-GICHRDIKPQNLLIDP 171          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: GSK3_CAEBR (Glycogen synthase kinase-3 OS=Caenorhabditis briggsae GN=gsk-3 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.423e-49
Identity = 94/175 (53.71%), Postives = 131/175 (74.86%), Query Frame = 3
Query:  231 DKEMSAAVIQGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFST-TSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLT 752
            +K++ +  ++    VT  + S    G + + +  ISY  ++V+G GSFG+VF AK   T E VAIKKVLQD+R+KNRELQ+MR ++HPN++ LK+ F+S+   KDEL+LNL++EYVPET+YRV +HYS   Q +P+IYVKLY YQ+ R LAYIH++ G+CHRD+KPQNLL+DP T
Sbjct:    2 NKQLLSCSLKSGKQVTMVVASVATDGVDQQVE--ISYYDQKVIGNGSFGVVFLAKLSTTNEMVAIKKVLQDKRFKNRELQIMRKLNHPNIVKLKYFFYSSGDKKDELYLNLILEYVPETVYRVARHYSKQRQSIPMIYVKLYMYQLLRSLAYIHSI-GICHRDIKPQNLLIDPET 173          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: GSK3B_RAT (Glycogen synthase kinase-3 beta OS=Rattus norvegicus GN=Gsk3b PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.051e-48
Identity = 91/161 (56.52%), Postives = 126/161 (78.26%), Query Frame = 3
Query:  279 GHIISTTIG--GKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFST-TSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLT 752
            G  ++T +   G+  +  Q +SY   +V+G GSFG+V+QAK  ++GE VAIKKVLQD+R+KNRELQ+MR +DH N++ L++ F+S+   KDE++LNLV++YVPET+YRV +HYS   Q +P+IYVKLY YQ+FR LAYIH+  G+CHRD+KPQNLL+DP T
Sbjct:   34 GSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF-GICHRDIKPQNLLLDPDT 193          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: GSK3B_MOUSE (Glycogen synthase kinase-3 beta OS=Mus musculus GN=Gsk3b PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.051e-48
Identity = 91/161 (56.52%), Postives = 126/161 (78.26%), Query Frame = 3
Query:  279 GHIISTTIG--GKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFST-TSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLT 752
            G  ++T +   G+  +  Q +SY   +V+G GSFG+V+QAK  ++GE VAIKKVLQD+R+KNRELQ+MR +DH N++ L++ F+S+   KDE++LNLV++YVPET+YRV +HYS   Q +P+IYVKLY YQ+FR LAYIH+  G+CHRD+KPQNLL+DP T
Sbjct:   34 GSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF-GICHRDIKPQNLLLDPDT 193          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: GSK3B_HUMAN (Glycogen synthase kinase-3 beta OS=Homo sapiens GN=GSK3B PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.051e-48
Identity = 91/161 (56.52%), Postives = 126/161 (78.26%), Query Frame = 3
Query:  279 GHIISTTIG--GKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFST-TSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLT 752
            G  ++T +   G+  +  Q +SY   +V+G GSFG+V+QAK  ++GE VAIKKVLQD+R+KNRELQ+MR +DH N++ L++ F+S+   KDE++LNLV++YVPET+YRV +HYS   Q +P+IYVKLY YQ+FR LAYIH+  G+CHRD+KPQNLL+DP T
Sbjct:   34 GSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF-GICHRDIKPQNLLLDPDT 193          
The following BLAST results are available for this feature:
BLAST of FC873743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
KSG8_ARATH9.770e-7572.32Shaggy-related protein kinase theta OS=Arabidopsis... [more]
KSGT_BRANA7.002e-7370.39Shaggy-related protein kinase theta OS=Brassica na... [more]
KSG4_ARATH1.973e-6763.24Shaggy-related protein kinase delta OS=Arabidopsis... [more]
KSG10_ARATH4.860e-6662.70Shaggy-related protein kinase kappa OS=Arabidopsis... [more]
KSG2_ARATH3.150e-6565.34Shaggy-related protein kinase beta OS=Arabidopsis ... [more]
GSK3_CAEEL2.423e-4953.76Glycogen synthase kinase-3 OS=Caenorhabditis elega... [more]
GSK3_CAEBR2.423e-4953.71Glycogen synthase kinase-3 OS=Caenorhabditis brigg... [more]
GSK3B_RAT2.051e-4856.52Glycogen synthase kinase-3 beta OS=Rattus norvegic... [more]
GSK3B_MOUSE2.051e-4856.52Glycogen synthase kinase-3 beta OS=Mus musculus GN... [more]
GSK3B_HUMAN2.051e-4856.52Glycogen synthase kinase-3 beta OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AA12FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873743 ID=FC873743; Name=FC873743; organism=Citrus clementina; type=EST; length=771bp
AAAGCAAAGCGAATAAGAAAGAAAAGAGGGGAGAGAGAGGGAGAGAGAGA
GTGAGTGTATGTGTATTGAATTGAGAGTTTGAAGCTGTAGCAGCTGTAAC
CCACATGGCTTCAATGCCCTTGGGGCCTCAGCCTCAGCCACCGCCGCCAC
CACAAGCACAAGCCCCACCATCGCAGCAACCGCACTTCGACAATGACCTG
CTGAAACGACACCGTCCGGATATGGACTCCGACAAGGAAATGTCAGCTGC
AGTTATTCAGGGGAATGATGCTGTCACTGGCCACATCATTTCTACCACAA
TTGGAGGCAAAAATGGCGAACCCAAGCAGACGATCAGTTACATGGCAGAG
CGTGTTGTTGGTACTGGATCATTCGGTATCGTTTTTCAGGCAAAATGCTT
GGAAACTGGAGAGACAGTGGCTATAAAAAAGGTCTTGCAAGACAGGCGGT
ATAAAAATCGTGAACTGCAGTTAATGCGTTTGATGGATCACCCGAATGTG
ATTTCCCTTAAGCATTGTTTCTTCTCCACAACAAGTAAAGATGAGCTTTT
TTTGAATTTGGTTATGGAATATGTTCCTGAGACTATGTACCGGGTGCTGA
AGCATTACAGCAGTATGAACCAGAGGATGCCCCTCATCTATGTAAAACTG
TATACATATCAAATCTTTAGGGGCTTGGCATATATTCATACAGTTCCTGG
GGTCTGCCATAGGGATGTGAAGCCTCAAAACCTCTTGGTTGATCCACTCA
CCCACCGGTTAAGCTTTGTGA
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