FC873743

Overview
NameFC873743
Unique NameFC873743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length771
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: CKB21_ORYSJ (Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp. japonica GN=CDKB2-1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 51/165 (30.91%), Postives = 85/165 (51.52%), Query Frame = 3
Query:  288 ISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKN------RELQLMRLMDHPN-VISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHRL 761
            ++TT  G  GE +    Y     VG G++G V++A+   TG  VA+KK       +       RE+ L+R++   + V+ L         + +  L LV EY+   + + ++ +    Q++P+  VK+  YQ+ +G+A+ H   GV HRD+KP NLL+D  T  L
Sbjct:   13 VTTTTDG--GELRAMDLYEKLEKVGEGTYGKVYKAREKATGRIVALKKTRLPEDDEGVPPTALREVSLLRMLSQDSHVVRLLDLKQGQNKEGQTILYLVFEYMDTDLKKFIRAHRQNLQKIPVPTVKILMYQLCKGVAFCHG-RGVLHRDLKPHNLLMDRKTMAL 174          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: CDKL1_HUMAN (Cyclin-dependent kinase-like 1 OS=Homo sapiens GN=CDKL1 PE=2 SV=5)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 43/134 (32.09%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  357 VGTGSFGIVFQAKCLETGETVAIKKVLQD------RRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLV 740
            +G GS+G+VF+ +  +TG+ VAIKK L+       ++   RE+++++ + HPN+++L   F     + +  L+LV EY   T+   L  Y    + +P   VK  T+Q  + + + H      HRDVKP+N+L+
Sbjct:   10 IGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVF-----RRKRRLHLVFEYCDHTVLHELDRY---QRGVPEHLVKSITWQTLQAVNFCHK-HNCIHRDVKPENILI 134          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: CDKD3_ARATH (Cyclin-dependent kinase D-3 OS=Arabidopsis thaliana GN=CDKD-3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 47/148 (31.76%), Postives = 82/148 (55.41%), Query Frame = 3
Query:  318 EPKQTIS-YMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKN------RELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLV 740
            +PK+    Y+ + V+G G++G+VF+A   +T +TVAIKK+   ++ +       RE+++++ + HP++I L   F    +     L+LV E++   +  V++     N  +    +K Y    F+GLAY H    V HRD+KP NLL+
Sbjct:    4 QPKKVADRYLKQEVLGQGTYGVVFKATDTKTEQTVAIKKIRLGKQREGVNITALREIKMLKELKHPHIILLIDAFPHKEN-----LHLVFEFMETDLEAVIR---DSNIFLSPADIKSYLLMTFKGLAYCHD-KWVLHRDMKPNNLLI 142          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: CDC2_RANDY (Cell division control protein 2 homolog OS=Rana dybowskii GN=CDC2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 43/135 (31.85%), Postives = 73/135 (54.07%), Query Frame = 3
Query:  357 VGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKN------RELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            +G G++G+V++     TG+ VA+KK+  +   +       RE+ L++ + HPN++    C      +D   L L+ E++   + + L    S  Q +  + VK Y YQI +G+ + H    V HRD+KPQNLL+D
Sbjct:   10 IGEGTYGVVYKGVHKATGQIVAMKKIRLENEEEGVPSTAIREISLLKELQHPNIV----CLLDVLMQDSR-LYLIFEFLSMDLKKYLDSIPS-GQYLEAMLVKSYLYQILQGIIFCHA-RRVLHRDLKPQNLLID 137          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: CDC2B_ANTMA (Cell division control protein 2 homolog B (Fragment) OS=Antirrhinum majus GN=CDC2B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 44/131 (33.59%), Postives = 76/131 (58.02%), Query Frame = 3
Query:  369 SFGIVFQAKCLETGETVAIKKVLQDRRYKN------RELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            ++G+V++A+ +ET E +A+KK+  ++  +       RE+ L++ M H N+++LK          E  L LV EY+   + + +      +Q + +  VK++  QI RG+AY H+   V HRD+KPQNLL+D
Sbjct:    1 AYGVVYKARDIETNEDIALKKIRLEQEDEGVPSTAIREISLLKEMHHENIVNLKDVVHR-----EKRLYLVFEYLDLDLKKHMDSCPEFSQDLHM--VKMFLCQILRGVAYCHS-HRVLHRDLKPQNLLID 123          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: MPK5_ORYSJ (Mitogen-activated protein kinase 5 OS=Oryza sativa subsp. japonica GN=MPK5 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.041e-12
Identity = 47/135 (34.81%), Postives = 71/135 (52.59%), Query Frame = 3
Query:  357 VGTGSFGIVFQAKCLETGETVAIKKVLQ------DRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            +G G++GIV      ET E VAIKK+        D +   RE++L+R +DH N+I ++          + F ++ +    E M   L H    NQ +   + + + YQI RGL YIH+   V HRD+KP NLL++
Sbjct:   42 IGRGAYGIVCSVMNFETREMVAIKKIANAFNNDMDAKRTLREIKLLRHLDHENIIGIRDVI--PPPIPQAFNDVYI--ATELMDTDLHHIIRSNQELSEEHCQYFLYQILRGLKYIHSA-NVIHRDLKPSNLLLN 171          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: MPK5_ORYSI (Mitogen-activated protein kinase 5 OS=Oryza sativa subsp. indica GN=MPK5 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.041e-12
Identity = 47/135 (34.81%), Postives = 71/135 (52.59%), Query Frame = 3
Query:  357 VGTGSFGIVFQAKCLETGETVAIKKVLQ------DRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            +G G++GIV      ET E VAIKK+        D +   RE++L+R +DH N+I ++          + F ++ +    E M   L H    NQ +   + + + YQI RGL YIH+   V HRD+KP NLL++
Sbjct:   42 IGRGAYGIVCSVMNFETREMVAIKKIANAFNNDMDAKRTLREIKLLRHLDHENIIGIRDVI--PPPIPQAFNDVYI--ATELMDTDLHHIIRSNQELSEEHCQYFLYQILRGLKYIHSA-NVIHRDLKPSNLLLN 171          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: MPK4_ORYSJ (Mitogen-activated protein kinase 4 OS=Oryza sativa subsp. japonica GN=MPK4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.041e-12
Identity = 46/141 (32.62%), Postives = 77/141 (54.61%), Query Frame = 3
Query:  339 YMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQ------DRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            Y+  + +G G++GIV  +    T E VAIKK+        D     REL+L+R + H NVI+LK        +    + LV E +   +++++K     +Q +   + + + +Q+ RGL Y+H+  G+ HRD+KP NLLV+
Sbjct:   32 YVPIKPIGRGAYGIVCSSINRATNEKVAIKKINNVFDNRVDALRTLRELKLLRHLRHENVIALKDIMMPVHRRSFKDVYLVYELMDTDLHQIIK----SSQPLSNDHCQYFLFQLLRGLKYLHSA-GILHRDLKPGNLLVN 167          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: MPK2_ORYSJ (Mitogen-activated protein kinase 2 OS=Oryza sativa subsp. japonica GN=MPK2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.041e-12
Identity = 49/137 (35.77%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  351 RVVGTGSFGIVFQAKCLETGETVAIKKVLQ------DRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            R VG G+ GI+      +T + VAIKK+        D +   RE++L+R MDH NVIS+K        + E F ++ + Y  E M   L H    NQ +   + + + YQ+ RGL Y+H+   V HRD++P NLL++
Sbjct:   65 RPVGRGACGIICAVVNAQTRQEVAIKKIGNAFDNQIDAKRTLREIKLLRHMDHDNVISIKDII--RPPRRENFNDVYIVY--ELMDTDLHHLLRSNQPLTDDHCQYFLYQVLRGLKYVHSA-NVLHRDLRPSNLLLN 196          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: MPK1_ARATH (Mitogen-activated protein kinase 1 OS=Arabidopsis thaliana GN=MPK1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.041e-12
Identity = 47/143 (32.87%), Postives = 78/143 (54.55%), Query Frame = 3
Query:  339 YMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKN--------RELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            YM  + +G G++G+V  +   +T E VAIKK+     Y+N        REL+L+R + H NVI+LK             + LV E +   +++++K     +Q +   + + + +Q+ RGL YIH+   + HRD+KP NLLV+
Sbjct:   32 YMPIKPIGRGAYGVVCSSVNSDTNEKVAIKKI--HNVYENRIDALRTLRELKLLRHLRHENVIALKDVMMPIHKMSFKDVYLVYELMDTDLHQIIK----SSQVLSNDHCQYFLFQLLRGLKYIHSA-NILHRDLKPGNLLVN 167          
The following BLAST results are available for this feature:
BLAST of FC873743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
CKB21_ORYSJ3.094e-1230.91Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp... [more]
CDKL1_HUMAN3.094e-1232.09Cyclin-dependent kinase-like 1 OS=Homo sapiens GN=... [more]
CDKD3_ARATH3.094e-1231.76Cyclin-dependent kinase D-3 OS=Arabidopsis thalian... [more]
CDC2_RANDY3.094e-1231.85Cell division control protein 2 homolog OS=Rana dy... [more]
CDC2B_ANTMA3.094e-1233.59Cell division control protein 2 homolog B (Fragmen... [more]
MPK5_ORYSJ4.041e-1234.81Mitogen-activated protein kinase 5 OS=Oryza sativa... [more]
MPK5_ORYSI4.041e-1234.81Mitogen-activated protein kinase 5 OS=Oryza sativa... [more]
MPK4_ORYSJ4.041e-1232.62Mitogen-activated protein kinase 4 OS=Oryza sativa... [more]
MPK2_ORYSJ4.041e-1235.77Mitogen-activated protein kinase 2 OS=Oryza sativa... [more]
MPK1_ARATH4.041e-1232.87Mitogen-activated protein kinase 1 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AA12FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873743 ID=FC873743; Name=FC873743; organism=Citrus clementina; type=EST; length=771bp
AAAGCAAAGCGAATAAGAAAGAAAAGAGGGGAGAGAGAGGGAGAGAGAGA
GTGAGTGTATGTGTATTGAATTGAGAGTTTGAAGCTGTAGCAGCTGTAAC
CCACATGGCTTCAATGCCCTTGGGGCCTCAGCCTCAGCCACCGCCGCCAC
CACAAGCACAAGCCCCACCATCGCAGCAACCGCACTTCGACAATGACCTG
CTGAAACGACACCGTCCGGATATGGACTCCGACAAGGAAATGTCAGCTGC
AGTTATTCAGGGGAATGATGCTGTCACTGGCCACATCATTTCTACCACAA
TTGGAGGCAAAAATGGCGAACCCAAGCAGACGATCAGTTACATGGCAGAG
CGTGTTGTTGGTACTGGATCATTCGGTATCGTTTTTCAGGCAAAATGCTT
GGAAACTGGAGAGACAGTGGCTATAAAAAAGGTCTTGCAAGACAGGCGGT
ATAAAAATCGTGAACTGCAGTTAATGCGTTTGATGGATCACCCGAATGTG
ATTTCCCTTAAGCATTGTTTCTTCTCCACAACAAGTAAAGATGAGCTTTT
TTTGAATTTGGTTATGGAATATGTTCCTGAGACTATGTACCGGGTGCTGA
AGCATTACAGCAGTATGAACCAGAGGATGCCCCTCATCTATGTAAAACTG
TATACATATCAAATCTTTAGGGGCTTGGCATATATTCATACAGTTCCTGG
GGTCTGCCATAGGGATGTGAAGCCTCAAAACCTCTTGGTTGATCCACTCA
CCCACCGGTTAAGCTTTGTGA
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