FC873743

Overview
NameFC873743
Unique NameFC873743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length771
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873743_ssr41 microsatellite FC873743_ssr41:41..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5940 contig Ccv1_Contig5940:15..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: GSK3B_SPECI (Glycogen synthase kinase-3 beta OS=Spermophilus citellus GN=GSK3B PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.330e-47
Identity = 90/161 (55.90%), Postives = 125/161 (77.64%), Query Frame = 3
Query:  279 GHIISTTIG--GKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFST-TSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLT 752
            G  ++T +   G+  +  Q +SY   +V+G GSFG+V+QAK  ++GE VAIKKVLQD+R+KNRELQ+MR +DH N++ L++ F+S+   KD ++LNLV++YVPET+YRV +HYS   Q +P+IYVKLY YQ+FR LAYIH+  G+CHRD+KPQNLL+DP T
Sbjct:   34 GSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDVVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF-GICHRDIKPQNLLLDPDT 193          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: GSK3A_RAT (Glycogen synthase kinase-3 alpha OS=Rattus norvegicus GN=Gsk3a PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.619e-47
Identity = 89/150 (59.33%), Postives = 119/150 (79.33%), Query Frame = 3
Query:  306 GKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFST-TSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLT 752
            G+  E  Q ++Y   +V+G GSFG+V+QA+  ET E VAIKKVLQD+R+KNRELQ+MR +DH N++ L++ F+S+   KDEL+LNLV+EYVPET+YRV +H++     +P+IYVK+Y YQ+FR LAYIH+  GVCHRD+KPQNLLVDP T
Sbjct:  108 GQGPERSQEVAYTDIKVIGNGSFGVVYQARLAETRELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDELYLNLVLEYVPETVYRVARHFTKAKLIIPIIYVKVYMYQLFRSLAYIHS-QGVCHRDIKPQNLLVDPDT 256          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: GSK3A_HUMAN (Glycogen synthase kinase-3 alpha OS=Homo sapiens GN=GSK3A PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 8.619e-47
Identity = 88/150 (58.67%), Postives = 119/150 (79.33%), Query Frame = 3
Query:  306 GKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFST-TSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLT 752
            G+  E  Q ++Y   +V+G GSFG+V+QA+  ET E VAIKKVLQD+R+KNRELQ+MR +DH N++ L++ F+S+   KDEL+LNLV+EYVPET+YRV +H++     +P++YVK+Y YQ+FR LAYIH+  GVCHRD+KPQNLLVDP T
Sbjct:  108 GQGPERSQEVAYTDIKVIGNGSFGVVYQARLAETRELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDELYLNLVLEYVPETVYRVARHFTKAKLTIPILYVKVYMYQLFRSLAYIHS-QGVCHRDIKPQNLLVDPDT 256          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: GSK3A_MOUSE (Glycogen synthase kinase-3 alpha OS=Mus musculus GN=Gsk3a PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.920e-46
Identity = 88/150 (58.67%), Postives = 118/150 (78.67%), Query Frame = 3
Query:  306 GKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFST-TSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLT 752
            G+  E  Q ++Y   +V+G GSFG+V+QA+  ET E VAIKKVLQD+R+KNRELQ+MR +DH N++ L++ F+S+   KDEL+LNLV+EYVPET+YRV +H++      P+IY+K+Y YQ+FR LAYIH+  GVCHRD+KPQNLLVDP T
Sbjct:  108 GQGPERSQEVAYTDIKVIGNGSFGVVYQARLAETRELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDELYLNLVLEYVPETVYRVARHFTKAKLITPIIYIKVYMYQLFRSLAYIHS-QGVCHRDIKPQNLLVDPDT 256          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: SGG_DROME (Protein kinase shaggy OS=Drosophila melanogaster GN=sgg PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.508e-46
Identity = 88/161 (54.66%), Postives = 124/161 (77.02%), Query Frame = 3
Query:  279 GHIISTTIG--GKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSK-DELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLT 752
            G  I+T +   G+  +  Q +SY   +V+G GSFG+VFQAK  +TGE VAIKKVLQDRR+KNRELQ+MR ++H N++ L + F+S+  K DE+FLNLV+EY+PET+Y+V + Y+   Q +P+ +++LY YQ+FR LAYIH++ G+CHRD+KPQNLL+DP T
Sbjct:  585 GSKITTVVATPGQGTDRVQEVSYTDTKVIGNGSFGVVFQAKLCDTGELVAIKKVLQDRRFKNRELQIMRKLEHCNIVKLLYFFYSSGEKRDEVFLNLVLEYIPETVYKVARQYAKTKQTIPINFIRLYMYQLFRSLAYIHSL-GICHRDIKPQNLLLDPET 744          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: GSK3_DICDI (Glycogen synthase kinase-3 OS=Dictyostelium discoideum GN=gskA PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 4.426e-43
Identity = 89/192 (46.35%), Postives = 127/192 (66.15%), Query Frame = 3
Query:  219 DMDSDKEMSAAVIQGNDAVTGHIISTTIGGKNGEPKQT-----------ISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHRL 761
            D   +K+       GN   T    S++    + +P+             + Y+ E V+G GSFG+V QA   +T E VAIKKVLQD+RYKNRELQ+M++++H N++SLK+ F+ T+  DE++LNLV+EYVP+T+YRV +HYS   Q +P I+VKLY YQ+ R + YIH++ G+CHRD+KPQNLL+D  T  L
Sbjct:    5 DQILEKDKKETDDNGNKKTTTTTSSSSSSSSSSKPRSNKFDKVIIKSNGVCYITEGVIGNGSFGVVTQAIVADTKEVVAIKKVLQDQRYKNRELQIMKMLNHINIVSLKNSFY-TSDNDEVYLNLVLEYVPDTVYRVSRHYSMSKQPVPNIFVKLYIYQLCRSINYIHSL-GICHRDIKPQNLLLDTSTSTL 194          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: MRK1_YEAST (Serine/threonine-protein kinase MRK1 OS=Saccharomyces cerevisiae GN=MRK1 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 9.861e-43
Identity = 77/157 (49.04%), Postives = 111/157 (70.70%), Query Frame = 3
Query:  282 HIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLT 752
            H   T +  KN      ISY    VVG GSFG+V     +ET + VAIKKVLQDRRYKNREL+ M+++ HPN + L++ F+    +DE++LNLV++Y+P+++Y+ L+H+ ++  +MP + +K Y YQ+F+ L Y+H VP +CHRD+KPQNLLVDP T
Sbjct:  145 HDRKTDVDRKNHGGTIDISYPTTEVVGHGSFGVVVTTVIIETNQKVAIKKVLQDRRYKNRELETMKMLCHPNTVGLQYYFYEKDEEDEVYLNLVLDYMPQSLYQRLRHFVNLKMQMPRVEIKFYAYQLFKALNYLHNVPRICHRDIKPQNLLVDPTT 301          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: GSK3_SCHPO (Protein kinase gsk3 OS=Schizosaccharomyces pombe GN=gsk3 PE=1 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 4.143e-41
Identity = 81/155 (52.26%), Postives = 113/155 (72.90%), Query Frame = 3
Query:  285 IISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFST-TSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDP 746
            I  T   G  GE KQ +SY + +VVG+GSFG+V Q   +E+    AIK+VLQD+R+KNRELQ+MR+M HPN++ L   +++T  + DE++LNLV+E++PET+YR  + Y+     MP++ VKLY YQ+ R LAYIH   G+CHRD+KPQNLL+DP
Sbjct:   15 IKETARDGSTGEVKQ-LSYTSSKVVGSGSFGVVMQVHLIESDSKAAIKRVLQDKRFKNRELQIMRIMKHPNIVDLIAYYYTTGDNSDEVYLNLVLEFMPETIYRASRLYTRQKLSMPMLEVKLYIYQLLRSLAYIH-ASGICHRDIKPQNLLLDP 167          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: GSK3H_DROME (Putative glycogen synthase kinase-3 homolog OS=Drosophila melanogaster GN=gskt PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.067e-41
Identity = 80/141 (56.74%), Postives = 110/141 (78.01%), Query Frame = 3
Query:  333 ISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSK-DELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLT 752
            ISY   +VVG GSFG+VFQAK + + E VAIKKVLQDRR+KNRELQ+MR + H N+I+LK  FFS+  K DE++LNLVME++PET+Y+V + Y+   Q +P+ +V+LY YQ+ R + Y+H++ G CHRD+KPQN+L+D  T
Sbjct:   31 ISYTDAKVVGNGSFGVVFQAKMVPSNEMVAIKKVLQDRRFKNRELQIMRKLRHDNIITLKWFFFSSGEKRDEVYLNLVMEFLPETLYKVERQYARAKQTLPVNFVRLYMYQLLRSMGYLHSL-GFCHRDIKPQNMLLDSET 170          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: MDS1_YEAST (Serine/threonine-protein kinase MDS1/RIM11 OS=Saccharomyces cerevisiae GN=MDS1 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.474e-38
Identity = 72/143 (50.35%), Postives = 103/143 (72.03%), Query Frame = 3
Query:  333 ISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHRL 761
            IS+    VVG GSFG+VF     ET E VAIKKVLQD+R+KNREL++M+++ H N+I LK+ F+   S+DE++LNL++EY+P+++Y+ L+H+      M  + +K Y +Q+F+ L Y+H    VCHRD+KPQNLLVDP T  L
Sbjct:   37 ISFPTTEVVGHGSFGVVFATVIQETNEKVAIKKVLQDKRFKNRELEIMKMLSHINIIDLKYFFYERDSQDEIYLNLILEYMPQSLYQRLRHFVHQRTPMSRLEIKYYMFQLFKSLNYLHHFANVCHRDIKPQNLLVDPETWSL 179          
The following BLAST results are available for this feature:
BLAST of FC873743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
GSK3B_SPECI1.330e-4755.90Glycogen synthase kinase-3 beta OS=Spermophilus ci... [more]
GSK3A_RAT8.619e-4759.33Glycogen synthase kinase-3 alpha OS=Rattus norvegi... [more]
GSK3A_HUMAN8.619e-4758.67Glycogen synthase kinase-3 alpha OS=Homo sapiens G... [more]
GSK3A_MOUSE1.920e-4658.67Glycogen synthase kinase-3 alpha OS=Mus musculus G... [more]
SGG_DROME2.508e-4654.66Protein kinase shaggy OS=Drosophila melanogaster G... [more]
GSK3_DICDI4.426e-4346.35Glycogen synthase kinase-3 OS=Dictyostelium discoi... [more]
MRK1_YEAST9.861e-4349.04Serine/threonine-protein kinase MRK1 OS=Saccharomy... [more]
GSK3_SCHPO4.143e-4152.26Protein kinase gsk3 OS=Schizosaccharomyces pombe G... [more]
GSK3H_DROME7.067e-4156.74Putative glycogen synthase kinase-3 homolog OS=Dro... [more]
MDS1_YEAST1.474e-3850.35Serine/threonine-protein kinase MDS1/RIM11 OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AA12FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873743 ID=FC873743; Name=FC873743; organism=Citrus clementina; type=EST; length=771bp
AAAGCAAAGCGAATAAGAAAGAAAAGAGGGGAGAGAGAGGGAGAGAGAGA
GTGAGTGTATGTGTATTGAATTGAGAGTTTGAAGCTGTAGCAGCTGTAAC
CCACATGGCTTCAATGCCCTTGGGGCCTCAGCCTCAGCCACCGCCGCCAC
CACAAGCACAAGCCCCACCATCGCAGCAACCGCACTTCGACAATGACCTG
CTGAAACGACACCGTCCGGATATGGACTCCGACAAGGAAATGTCAGCTGC
AGTTATTCAGGGGAATGATGCTGTCACTGGCCACATCATTTCTACCACAA
TTGGAGGCAAAAATGGCGAACCCAAGCAGACGATCAGTTACATGGCAGAG
CGTGTTGTTGGTACTGGATCATTCGGTATCGTTTTTCAGGCAAAATGCTT
GGAAACTGGAGAGACAGTGGCTATAAAAAAGGTCTTGCAAGACAGGCGGT
ATAAAAATCGTGAACTGCAGTTAATGCGTTTGATGGATCACCCGAATGTG
ATTTCCCTTAAGCATTGTTTCTTCTCCACAACAAGTAAAGATGAGCTTTT
TTTGAATTTGGTTATGGAATATGTTCCTGAGACTATGTACCGGGTGCTGA
AGCATTACAGCAGTATGAACCAGAGGATGCCCCTCATCTATGTAAAACTG
TATACATATCAAATCTTTAGGGGCTTGGCATATATTCATACAGTTCCTGG
GGTCTGCCATAGGGATGTGAAGCCTCAAAACCTCTTGGTTGATCCACTCA
CCCACCGGTTAAGCTTTGTGA
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