FC873743

Overview
NameFC873743
Unique NameFC873743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length771
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873743_ssr41 microsatellite FC873743_ssr41:41..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5940 contig Ccv1_Contig5940:15..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: CIPKB_ARATH (CBL-interacting serine/threonine-protein kinase 11 OS=Arabidopsis thaliana GN=CIPK11 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 49/145 (33.79%), Postives = 76/145 (52.41%), Query Frame = 3
Query:  339 YMAERVVGTGSFGIVFQAKCLETGETVAIK-----KVLQDRRYKN---RELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVP--ETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            Y   +++G G+F  VF A+   TG++VA+K     K+L +    N   RE+ +MR + HPN++ L H   +T SK    +   ME+V   E   ++ KH      R+     + Y  Q+   + Y H   GV HRD+KP+NLL+D
Sbjct:   21 YELGKLLGCGAFAKVFHARDRRTGQSVAVKILNKKKLLTNPALANNIKREISIMRRLSHPNIVKL-HEVMATKSK----IFFAMEFVKGGELFNKISKH-----GRLSEDLSRRYFQQLISAVGYCHA-RGVYHRDLKPENLLID 154          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: CDKL3_RAT (Cyclin-dependent kinase-like 3 OS=Rattus norvegicus GN=Cdkl3 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 41/133 (30.83%), Postives = 70/133 (52.63%), Query Frame = 3
Query:  357 VGTGSFGIVFQAKCLETGETVAIKKVLQD-----RRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLV 740
            VG GS+G V + K  +TG  VAIK   +       +   RE++ ++   H N+++L   F     + +  ++LV E++  T+   L+HY    +   L   + Y +QI R + Y+H    + HRD+KP+N+LV
Sbjct:   10 VGEGSYGTVMKCKHKDTGRIVAIKIFYEKPEKSVNKIATREIKFLKQFRHENLVNLIEVF-----RQKKKIHLVFEFIDHTVLDELQHYCHGLESKRL---RKYLFQILRAIEYLHN-NNIIHRDIKPENILV 133          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: CDKL3_MOUSE (Cyclin-dependent kinase-like 3 OS=Mus musculus GN=Cdkl3 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 41/133 (30.83%), Postives = 70/133 (52.63%), Query Frame = 3
Query:  357 VGTGSFGIVFQAKCLETGETVAIKKVLQD-----RRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLV 740
            VG GS+G V + K  +TG  VAIK   +       +   RE++ ++   H N+++L   F     + +  ++LV E++  T+   L+HY    +   L   + Y +QI R + Y+H    + HRD+KP+N+LV
Sbjct:   10 VGEGSYGTVMKCKHKDTGRIVAIKIFYEKPEKSVNKIATREIKFLKQFRHENLVNLIEVF-----RQKKKIHLVFEFIDHTVLDELQHYCHGLESKRL---RKYLFQILRAIEYLHN-NNIIHRDIKPENILV 133          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: CDK5_DROME (Cell division protein kinase 5 homolog OS=Drosophila melanogaster GN=Cdk5 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 42/135 (31.11%), Postives = 73/135 (54.07%), Query Frame = 3
Query:  357 VGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKN------RELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            +G G++G VF+ +  +T E VA+K+V  D   +       RE+ L++ + H N++ L     S        L LV E+  + +    K++ S+N  + +   + +  Q+ RGLA+ H+   V HRD+KPQNLL++
Sbjct:   10 IGEGTYGTVFKGRNRDTMEIVALKRVRLDEDDEGVPSSALREICLLKELKHKNIVRLIDVLHSDKK-----LTLVFEHCDQDLK---KYFDSLNGEIDMAVCRSFMLQLLRGLAFCHS-HNVLHRDLKPQNLLIN 135          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: CDC2_CAEBR (Cell division control protein 2 homolog OS=Caenorhabditis briggsae GN=cdk-1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 42/135 (31.11%), Postives = 72/135 (53.33%), Query Frame = 3
Query:  357 VGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKN------RELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            +G G++G+V++ +   T   VA+KK+  +   +       RE+ L++ + HPNV+ L+          E  L L+ E++   + R +   S   + +P   +K YT+QI + + + H    V HRD+KPQNLLVD
Sbjct:   22 IGEGTYGVVYKGRNRRTQAMVAMKKIRLESEDEGVPSTAVREISLLKELQHPNVVGLEAVIMQ-----ENRLYLIFEFLSYDLKRYMDTLSK-EEYLPSETLKSYTFQILQAMCFCHQ-RRVIHRDLKPQNLLVD 149          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: CDC2H_THEPA (Cell division control protein 2 homolog OS=Theileria parva GN=CRK2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 42/135 (31.11%), Postives = 75/135 (55.56%), Query Frame = 3
Query:  357 VGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKN------RELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            +G G++G+V++A+    GE  A+KK+  +   +       RE+ L++ + HPN++ L+    S     E  L LV EY+ + + ++L    + +  +     K + YQI RG++Y H    + HRD+KPQNLL++
Sbjct:   10 IGEGTYGVVYKAQN-NHGEICALKKIRVEEEDEGIPSTAIREISLLKELHHPNIVWLRDVIHS-----EKCLTLVFEYLDQDLKKLL---DACDGGLEPTTAKSFLYQILRGISYCHD-HRILHRDLKPQNLLIN 134          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: CDC2H_THEAN (Cell division control protein 2 homolog OS=Theileria annulata GN=CRK2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 42/135 (31.11%), Postives = 75/135 (55.56%), Query Frame = 3
Query:  357 VGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKN------RELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            +G G++G+V++A+    GE  A+KK+  +   +       RE+ L++ + HPN++ L+    S     E  L LV EY+ + + ++L    + +  +     K + YQI RG++Y H    + HRD+KPQNLL++
Sbjct:   10 IGEGTYGVVYKAQN-NHGEICALKKIRVEEEDEGIPSTAIREISLLKELHHPNIVWLRDVIHS-----EKCLTLVFEYLDQDLKKLL---DACDGGLEPTTAKSFLYQILRGISYCHD-HRILHRDLKPQNLLIN 134          
The following BLAST results are available for this feature:
BLAST of FC873743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
CIPKB_ARATH9.953e-1133.79CBL-interacting serine/threonine-protein kinase 11... [more]
CDKL3_RAT9.953e-1130.83Cyclin-dependent kinase-like 3 OS=Rattus norvegicu... [more]
CDKL3_MOUSE9.953e-1130.83Cyclin-dependent kinase-like 3 OS=Mus musculus GN=... [more]
CDK5_DROME9.953e-1131.11Cell division protein kinase 5 homolog OS=Drosophi... [more]
CDC2_CAEBR9.953e-1131.11Cell division control protein 2 homolog OS=Caenorh... [more]
CDC2H_THEPA9.953e-1131.11Cell division control protein 2 homolog OS=Theiler... [more]
CDC2H_THEAN9.953e-1131.11Cell division control protein 2 homolog OS=Theiler... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AA12FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873743 ID=FC873743; Name=FC873743; organism=Citrus clementina; type=EST; length=771bp
AAAGCAAAGCGAATAAGAAAGAAAAGAGGGGAGAGAGAGGGAGAGAGAGA
GTGAGTGTATGTGTATTGAATTGAGAGTTTGAAGCTGTAGCAGCTGTAAC
CCACATGGCTTCAATGCCCTTGGGGCCTCAGCCTCAGCCACCGCCGCCAC
CACAAGCACAAGCCCCACCATCGCAGCAACCGCACTTCGACAATGACCTG
CTGAAACGACACCGTCCGGATATGGACTCCGACAAGGAAATGTCAGCTGC
AGTTATTCAGGGGAATGATGCTGTCACTGGCCACATCATTTCTACCACAA
TTGGAGGCAAAAATGGCGAACCCAAGCAGACGATCAGTTACATGGCAGAG
CGTGTTGTTGGTACTGGATCATTCGGTATCGTTTTTCAGGCAAAATGCTT
GGAAACTGGAGAGACAGTGGCTATAAAAAAGGTCTTGCAAGACAGGCGGT
ATAAAAATCGTGAACTGCAGTTAATGCGTTTGATGGATCACCCGAATGTG
ATTTCCCTTAAGCATTGTTTCTTCTCCACAACAAGTAAAGATGAGCTTTT
TTTGAATTTGGTTATGGAATATGTTCCTGAGACTATGTACCGGGTGCTGA
AGCATTACAGCAGTATGAACCAGAGGATGCCCCTCATCTATGTAAAACTG
TATACATATCAAATCTTTAGGGGCTTGGCATATATTCATACAGTTCCTGG
GGTCTGCCATAGGGATGTGAAGCCTCAAAACCTCTTGGTTGATCCACTCA
CCCACCGGTTAAGCTTTGTGA
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