FC873743

Overview
NameFC873743
Unique NameFC873743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length771
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873743_ssr41 microsatellite FC873743_ssr41:41..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5940 contig Ccv1_Contig5940:15..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: MPK16_ORYSJ (Mitogen-activated protein kinase 16 OS=Oryza sativa subsp. japonica GN=MPK16 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.100e-15
Identity = 45/141 (31.91%), Postives = 78/141 (55.32%), Query Frame = 3
Query:  339 YMAERVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            Y    VVG GS+G+V  A    TG  VAIKK+      + D     RE++L+RL+ HP+++ +KH     + ++   + ++ E +   +++V+K     N  +   + + + YQ+ RG+ YIH    V HRD+KP+N+L +
Sbjct:   22 YEVTEVVGKGSYGVVAAAVDTHTGGRVAIKKINDVFEHISDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYIIFELMESDLHQVIK----ANDDLTPEHHQFFLYQLLRGMKYIHAA-SVFHRDLKPKNILAN 157          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: GLKA_DICDI (Probable serine/threonine-protein kinase glkA OS=Dictyostelium discoideum GN=glkA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.661e-15
Identity = 45/150 (30.00%), Postives = 87/150 (58.00%), Query Frame = 3
Query:  291 STTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLV 740
            S++    N  PK    Y   + VG G+FG V++AK  +  + VAIKKV +   + +RE  +++++ HPN + +   F+ T   ++   NLV +++P T+  +LK      +++ + ++K+  YQ+ + + +IH+   +CHRD+ P N+L+
Sbjct:   76 SSSTATVNSNPK-VYPYEIIKQVGQGTFGKVYEAKN-QDNKRVAIKKVEKSNHFISREYDILKIVAHPNCLRILDMFY-TAEDNKKMQNLVFDFIPYTLASLLK-----KRQLSINFIKVLFYQLCQAIKHIHS-KAICHRDITPNNILL 216          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: CDKA1_ARATH (Cyclin-dependent kinase A-1 OS=Arabidopsis thaliana GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.699e-15
Identity = 49/141 (34.75%), Postives = 81/141 (57.45%), Query Frame = 3
Query:  357 VGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKN------RELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHRL 761
            +G G++G+V++A+   T ET+A+KK+  ++  +       RE+ L++ M H N++ L+    S     E  L LV EY+   + + +      ++ + +I  K Y YQI RG+AY H+   V HRD+KPQNLL+D  T+ L
Sbjct:   10 IGEGTYGVVYKARDKVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHSNIVKLQDVVHS-----EKRLYLVFEYLDLDLKKHMDSTPDFSKDLHMI--KTYLYQILRGIAYCHS-HRVLHRDLKPQNLLIDRRTNSL 142          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: CDKA1_ORYSJ (Cyclin-dependent kinase A-1 OS=Oryza sativa subsp. japonica GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.136e-14
Identity = 51/147 (34.69%), Postives = 80/147 (54.42%), Query Frame = 3
Query:  339 YMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKN------RELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHRL 761
            Y  E  +G G++G+V++A+   T ET+A+KK+  ++  +       RE+ L++ M H N++ L     S     E  + LV EY+   + + +       +   LI  K Y YQI RG+AY H+   V HRD+KPQNLL+D  T+ L
Sbjct:    4 YEKEEKIGEGTYGVVYRARDKVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMHHGNIVRLHDVIHS-----EKRIYLVFEYLDLDLKKFMDSCPEFAKNPTLI--KSYLYQILRGVAYCHS-HRVLHRDLKPQNLLIDRRTNAL 142          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: CDC2A_ANTMA (Cell division control protein 2 homolog A OS=Antirrhinum majus GN=CDC2A PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.136e-14
Identity = 50/141 (35.46%), Postives = 81/141 (57.45%), Query Frame = 3
Query:  357 VGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKN------RELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHRL 761
            +G G++G+V++A+   T ET+A+KK+  ++  +       RE+ L++ M H N++ L+    S     E  L LV EY+   + + +      +Q   L  VK++ YQI RG+AY H+   V HRD+KPQNLL+D  T+ L
Sbjct:   10 IGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHS-----EKRLYLVFEYLDLDLKKHMDSCPEFSQDPRL--VKMFLYQILRGIAYCHS-HRVLHRDLKPQNLLIDRRTNAL 142          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: HOG1_MYCGR (Mitogen-activated protein kinase Hog1 OS=Mycosphaerella graminicola GN=Hog1 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.484e-14
Identity = 55/146 (37.67%), Postives = 78/146 (53.42%), Query Frame = 3
Query:  330 TISYMAERVVGTGSFGIVFQAKCLETGETVAIKK--------VLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            T  Y   + VG G+FG+V  AK   TG+ VA+KK        VL  R Y  REL+L++ + H NVISL   F S        +  V E +   ++R+L       Q     +++ + YQI RGL Y+H+  GV HRD+KP N+LV+
Sbjct:   17 TSRYTDLQPVGMGAFGLVCSAKDQLTGQAVAVKKIMKPFSTPVLSKRTY--RELKLLKHLKHENVISLSDIFISPLED----IYFVTELLGTDLHRLLTSRPLEKQ-----FIQYFLYQILRGLKYVHSA-GVVHRDLKPSNILVN 150          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: CDK3_HUMAN (Cell division protein kinase 3 OS=Homo sapiens GN=CDK3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.484e-14
Identity = 45/137 (32.85%), Postives = 81/137 (59.12%), Query Frame = 3
Query:  357 VGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKN------RELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPL 749
            +G G++G+V++AK  ETG+ VA+KK+  D   +       RE+ L++ + HPN++ L          +E  L LV E++ + + + +   S+    +PL  +K Y +Q+ +G+++ H+   V HRD+KPQNLL++ L
Sbjct:   10 IGEGTYGVVYKAKNRETGQLVALKKIRLDLEMEGVPSTAIREISLLKELKHPNIVRL-----LDVVHNERKLYLVFEFLSQDLKKYMD--STPGSELPLHLIKSYLFQLLQGVSFCHS-HRVIHRDLKPQNLLINEL 138          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: MPK4_ARATH (Mitogen-activated protein kinase 4 OS=Arabidopsis thaliana GN=MPK4 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.938e-14
Identity = 47/137 (34.31%), Postives = 80/137 (58.39%), Query Frame = 3
Query:  351 RVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            R +G G++GIV  A   ETGE VAIKK+      + D +   RE++L++ MDH NVI++K        ++   + +V E +   ++++++     NQ +   + + + YQ+ RGL Y+H+   V HRD+KP NLL++
Sbjct:   47 RPIGRGAYGIVCAATNSETGEEVAIKKIGNAFDNIIDAKRTLREIKLLKHMDHENVIAVKDIIKPPQRENFNDVYIVYELMDTDLHQIIR----SNQPLTDDHCRFFLYQLLRGLKYVHSA-NVLHRDLKPSNLLLN 178          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: MMK2_MEDSA (Mitogen-activated protein kinase homolog MMK2 OS=Medicago sativa GN=MMK2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.938e-14
Identity = 49/137 (35.77%), Postives = 78/137 (56.93%), Query Frame = 3
Query:  351 RVVGTGSFGIVFQAKCLETGETVAIKKVLQ------DRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            R VG G++GIV  A   ET E VAIKK+        D +   RE++L+R MDH NV+S+K        ++   + +V E +   ++++++     NQ M   + + + YQ+ RGL Y+H+   V HRD+KP NLL++
Sbjct:   41 RSVGRGAYGIVCAAVNAETREEVAIKKIGNAFDNRIDAKRTLREIKLLRHMDHENVMSIKDIIRPPQKENFNHVYIVSELMDTDLHQIIR----SNQPMTDDHCRYFVYQLLRGLKYVHSA-NVLHRDLKPSNLLLN 172          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: MPK13_ORYSJ (Mitogen-activated protein kinase 13 OS=Oryza sativa subsp. japonica GN=MPK13 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.531e-14
Identity = 48/149 (32.21%), Postives = 82/149 (55.03%), Query Frame = 3
Query:  315 GEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            GE  Q   Y  + VVG GS+G+V  A    TGE VAIKK+      + D     RE++++RL+ HP+++ +KH     T ++   + +V E +   +++V++     N  +   + + + YQ+   L YIH+   V HRD+KP+N+L +
Sbjct:    8 GEASQ---YQIQEVVGKGSYGVVAAAVDTHTGERVAIKKINDVFEHVSDAIRILREIKVLRLLRHPDIVVIKHIMLPPTRREFRDIYVVFELMESDLHQVIE----ANHDLSPEHHRFFLYQLLCALKYIHSA-NVFHRDLKPKNILAN 148          
The following BLAST results are available for this feature:
BLAST of FC873743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
MPK16_ORYSJ5.100e-1531.91Mitogen-activated protein kinase 16 OS=Oryza sativ... [more]
GLKA_DICDI6.661e-1530.00Probable serine/threonine-protein kinase glkA OS=D... [more]
CDKA1_ARATH8.699e-1534.75Cyclin-dependent kinase A-1 OS=Arabidopsis thalian... [more]
CDKA1_ORYSJ1.136e-1434.69Cyclin-dependent kinase A-1 OS=Oryza sativa subsp.... [more]
CDC2A_ANTMA1.136e-1435.46Cell division control protein 2 homolog A OS=Antir... [more]
HOG1_MYCGR1.484e-1437.67Mitogen-activated protein kinase Hog1 OS=Mycosphae... [more]
CDK3_HUMAN1.484e-1432.85Cell division protein kinase 3 OS=Homo sapiens GN=... [more]
MPK4_ARATH1.938e-1434.31Mitogen-activated protein kinase 4 OS=Arabidopsis ... [more]
MMK2_MEDSA1.938e-1435.77Mitogen-activated protein kinase homolog MMK2 OS=M... [more]
MPK13_ORYSJ2.531e-1432.21Mitogen-activated protein kinase 13 OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AA12FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873743 ID=FC873743; Name=FC873743; organism=Citrus clementina; type=EST; length=771bp
AAAGCAAAGCGAATAAGAAAGAAAAGAGGGGAGAGAGAGGGAGAGAGAGA
GTGAGTGTATGTGTATTGAATTGAGAGTTTGAAGCTGTAGCAGCTGTAAC
CCACATGGCTTCAATGCCCTTGGGGCCTCAGCCTCAGCCACCGCCGCCAC
CACAAGCACAAGCCCCACCATCGCAGCAACCGCACTTCGACAATGACCTG
CTGAAACGACACCGTCCGGATATGGACTCCGACAAGGAAATGTCAGCTGC
AGTTATTCAGGGGAATGATGCTGTCACTGGCCACATCATTTCTACCACAA
TTGGAGGCAAAAATGGCGAACCCAAGCAGACGATCAGTTACATGGCAGAG
CGTGTTGTTGGTACTGGATCATTCGGTATCGTTTTTCAGGCAAAATGCTT
GGAAACTGGAGAGACAGTGGCTATAAAAAAGGTCTTGCAAGACAGGCGGT
ATAAAAATCGTGAACTGCAGTTAATGCGTTTGATGGATCACCCGAATGTG
ATTTCCCTTAAGCATTGTTTCTTCTCCACAACAAGTAAAGATGAGCTTTT
TTTGAATTTGGTTATGGAATATGTTCCTGAGACTATGTACCGGGTGCTGA
AGCATTACAGCAGTATGAACCAGAGGATGCCCCTCATCTATGTAAAACTG
TATACATATCAAATCTTTAGGGGCTTGGCATATATTCATACAGTTCCTGG
GGTCTGCCATAGGGATGTGAAGCCTCAAAACCTCTTGGTTGATCCACTCA
CCCACCGGTTAAGCTTTGTGA
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