FC873743

Overview
NameFC873743
Unique NameFC873743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length771
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873743_ssr41 microsatellite FC873743_ssr41:41..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5940 contig Ccv1_Contig5940:15..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: HOG1_ASPFU (Mitogen-activated protein kinase hog1 OS=Aspergillus fumigatus GN=hog1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.618e-14
Identity = 52/146 (35.62%), Postives = 78/146 (53.42%), Query Frame = 3
Query:  330 TISYMAERVVGTGSFGIVFQAKCLETGETVAIKK--------VLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            T  Y   + VG G+FG+V  A+   TG+ VA+KK        VL  R Y  REL+L++ + H N+ISL   F S        +  V E +   ++R+L       Q     +++ + YQI RGL Y+H+  GV HRD+KP N+L++
Sbjct:   17 TSRYTDLQPVGMGAFGLVCSARDQLTGQPVAVKKIMKPFSTPVLSKRTY--RELKLLKHLRHENIISLSDIFISPLED----IYFVTELLGTDLHRLLTSRPLEKQ-----FIQYFLYQILRGLKYVHSA-GVVHRDLKPSNILIN 150          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: HOG1_ASPCL (Mitogen-activated protein kinase hog1 OS=Aspergillus clavatus GN=hog1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.618e-14
Identity = 52/146 (35.62%), Postives = 78/146 (53.42%), Query Frame = 3
Query:  330 TISYMAERVVGTGSFGIVFQAKCLETGETVAIKK--------VLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            T  Y   + VG G+FG+V  A+   TG+ VA+KK        VL  R Y  REL+L++ + H N+ISL   F S        +  V E +   ++R+L       Q     +++ + YQI RGL Y+H+  GV HRD+KP N+L++
Sbjct:   17 TSRYTDLQPVGMGAFGLVCSARDQLTGQPVAVKKIMKPFSTPVLSKRTY--RELKLLKHLRHENIISLSDIFISPLED----IYFVTELLGTDLHRLLTSRPLEKQ-----FIQYFLYQILRGLKYVHSA-GVVHRDLKPSNILIN 150          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: HOG1_ALTBR (Mitogen-activated protein kinase HOG1 OS=Alternaria brassicicola GN=HOG1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.618e-14
Identity = 54/146 (36.99%), Postives = 77/146 (52.74%), Query Frame = 3
Query:  330 TISYMAERVVGTGSFGIVFQAKCLETGETVAIKK--------VLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            T  Y   + VG G+FG+V  AK   T + VAIKK        VL  R Y  REL+L++ + H N+ISL   F S        +  V E +   ++R+L       Q     +++ + YQI RGL Y+H+  GV HRD+KP N+LV+
Sbjct:   17 TSRYTDLQPVGMGAFGLVCSAKDQLTSQAVAIKKIMKPFSTPVLSKRTY--RELKLLKHLRHENIISLSDIFISPLED----IYFVTELLGTDLHRLLTSRPLEKQ-----FIQYFLYQILRGLKYVHSA-GVVHRDLKPSNILVN 150          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: CDK2_XENLA (Cell division protein kinase 2 OS=Xenopus laevis GN=cdk2 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 9.618e-14
Identity = 46/135 (34.07%), Postives = 79/135 (58.52%), Query Frame = 3
Query:  357 VGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKN------RELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            +G G++G+V++A+  ETGE VA+KK+  D   +       RE+ L++ ++HPN++ L     +     E  L LV E++ + + + +    S    + L  VK Y +Q+ +GLA+ H+   V HRD+KPQNLL++
Sbjct:   10 IGEGTYGVVYKARNRETGEIVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT-----ENKLYLVFEFLNQDLKKFMD--GSNISGISLALVKSYLFQLLQGLAFCHS-HRVLHRDLKPQNLLIN 136          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: MAK_MOUSE (Serine/threonine-protein kinase MAK OS=Mus musculus GN=Mak PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.256e-13
Identity = 48/138 (34.78%), Postives = 76/138 (55.07%), Query Frame = 3
Query:  339 YMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQ-----DRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLL 737
            Y   + +G G++G V   K  E+GE VAIK++ +     D     RE++ ++ ++H NVI LK        ++   L  V EY+ E +Y+++K     N+  P   ++   YQI +GLA+IH   G  HRD+KP+NLL
Sbjct:    4 YTTMKQLGDGTYGSVLMGKSNESGELVAIKRMKRKFYSWDECMNLREVKSLKKLNHANVIKLKEVI-----RENDHLYFVFEYMKENLYQLMK---DRNKLFPESVIRNIMYQILQGLAFIHK-HGFFHRDMKPENLL 132          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: HOG1_COCHE (Mitogen-activated protein kinase HOG1 OS=Cochliobolus heterostrophus GN=HOG1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.256e-13
Identity = 53/146 (36.30%), Postives = 77/146 (52.74%), Query Frame = 3
Query:  330 TISYMAERVVGTGSFGIVFQAKCLETGETVAIKK--------VLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            T  Y   + VG G+FG+V  AK   T + VA+KK        VL  R Y  REL+L++ + H N+ISL   F S        +  V E +   ++R+L       Q     +++ + YQI RGL Y+H+  GV HRD+KP N+LV+
Sbjct:   17 TSRYTDLQPVGMGAFGLVCSAKDQLTNQAVAVKKIMKPFSTPVLSKRTY--RELKLLKHLRHENIISLSDIFISPLED----IYFVTELLGTDLHRLLTSRPLEKQ-----FIQYFLYQILRGLKYVHSA-GVVHRDLKPSNILVN 150          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: CDKA2_ORYSJ (Cyclin-dependent kinase A-2 OS=Oryza sativa subsp. japonica GN=CDKA-2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.256e-13
Identity = 49/141 (34.75%), Postives = 76/141 (53.90%), Query Frame = 3
Query:  357 VGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKN------RELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHRL 761
            +G G++G+V++ K   T ET+A+KK+  ++  +       RE+ L++ M H N++ L+          E  + LV EY+      + KH  S         VK + YQI RG+AY H+   V HRD+KPQNLL+D  T+ L
Sbjct:   10 IGEGTYGVVYKGKHRHTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHK-----EKCIYLVFEYLD---LDLKKHMDSSPDFKNHRIVKSFLYQILRGIAYCHS-HRVLHRDLKPQNLLIDRRTNSL 141          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: CDK2_MESAU (Cell division protein kinase 2 OS=Mesocricetus auratus GN=CDK2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.256e-13
Identity = 47/137 (34.31%), Postives = 83/137 (60.58%), Query Frame = 3
Query:  357 VGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKN------RELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHY--SSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            +G G++G+V++AK   TGE VA+KK+  D   +       RE+ L++ ++HPN++ L        ++++L+L      V E +++ LK +  +S    +PL  +K Y +Q+ +GLA+ H+   V HRD+KPQNLL++
Sbjct:   10 IGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIH---TENKLYL------VFELLHQDLKKFMDASAVTGIPLPLIKSYLFQLLQGLAFCHS-HRVLHRDLKPQNLLIN 136          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: CDK2_HUMAN (Cell division protein kinase 2 OS=Homo sapiens GN=CDK2 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.256e-13
Identity = 45/135 (33.33%), Postives = 80/135 (59.26%), Query Frame = 3
Query:  357 VGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKN------RELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            +G G++G+V++A+   TGE VA+KK+  D   +       RE+ L++ ++HPN++ L     +     E  L LV E++ + + + +   +S    +PL  +K Y +Q+ +GLA+ H+   V HRD+KPQNLL++
Sbjct:   10 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT-----ENKLYLVFEFLHQDLKKFMD--ASALTGIPLPLIKSYLFQLLQGLAFCHS-HRVLHRDLKPQNLLIN 136          
BLAST of FC873743 vs. ExPASy Swiss-Prot
Match: MPK1_ORYSJ (Mitogen-activated protein kinase 1 OS=Oryza sativa subsp. japonica GN=MPK1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.641e-13
Identity = 45/135 (33.33%), Postives = 75/135 (55.56%), Query Frame = 3
Query:  357 VGTGSFGIVFQAKCLETGETVAIKKVLQ------DRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVD 743
            +G G++GIV  A   ETGE VAIKK+        D +   RE++L+R MDH N+++++             + +  E +   ++++++     NQ +   + + + YQI RGL YIH+   V HRD+KP NLL++
Sbjct:   73 IGKGAYGIVCSALNSETGEQVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENIVAIRDIIPPPQRNSFNDVYIAYELMDTDLHQIIR----SNQALSEEHCQYFLYQILRGLKYIHSA-NVLHRDLKPSNLLLN 202          
The following BLAST results are available for this feature:
BLAST of FC873743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
HOG1_ASPFU9.618e-1435.62Mitogen-activated protein kinase hog1 OS=Aspergill... [more]
HOG1_ASPCL9.618e-1435.62Mitogen-activated protein kinase hog1 OS=Aspergill... [more]
HOG1_ALTBR9.618e-1436.99Mitogen-activated protein kinase HOG1 OS=Alternari... [more]
CDK2_XENLA9.618e-1434.07Cell division protein kinase 2 OS=Xenopus laevis G... [more]
MAK_MOUSE1.256e-1334.78Serine/threonine-protein kinase MAK OS=Mus musculu... [more]
HOG1_COCHE1.256e-1336.30Mitogen-activated protein kinase HOG1 OS=Cochliobo... [more]
CDKA2_ORYSJ1.256e-1334.75Cyclin-dependent kinase A-2 OS=Oryza sativa subsp.... [more]
CDK2_MESAU1.256e-1334.31Cell division protein kinase 2 OS=Mesocricetus aur... [more]
CDK2_HUMAN1.256e-1333.33Cell division protein kinase 2 OS=Homo sapiens GN=... [more]
MPK1_ORYSJ1.641e-1333.33Mitogen-activated protein kinase 1 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AA12FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873743 ID=FC873743; Name=FC873743; organism=Citrus clementina; type=EST; length=771bp
AAAGCAAAGCGAATAAGAAAGAAAAGAGGGGAGAGAGAGGGAGAGAGAGA
GTGAGTGTATGTGTATTGAATTGAGAGTTTGAAGCTGTAGCAGCTGTAAC
CCACATGGCTTCAATGCCCTTGGGGCCTCAGCCTCAGCCACCGCCGCCAC
CACAAGCACAAGCCCCACCATCGCAGCAACCGCACTTCGACAATGACCTG
CTGAAACGACACCGTCCGGATATGGACTCCGACAAGGAAATGTCAGCTGC
AGTTATTCAGGGGAATGATGCTGTCACTGGCCACATCATTTCTACCACAA
TTGGAGGCAAAAATGGCGAACCCAAGCAGACGATCAGTTACATGGCAGAG
CGTGTTGTTGGTACTGGATCATTCGGTATCGTTTTTCAGGCAAAATGCTT
GGAAACTGGAGAGACAGTGGCTATAAAAAAGGTCTTGCAAGACAGGCGGT
ATAAAAATCGTGAACTGCAGTTAATGCGTTTGATGGATCACCCGAATGTG
ATTTCCCTTAAGCATTGTTTCTTCTCCACAACAAGTAAAGATGAGCTTTT
TTTGAATTTGGTTATGGAATATGTTCCTGAGACTATGTACCGGGTGCTGA
AGCATTACAGCAGTATGAACCAGAGGATGCCCCTCATCTATGTAAAACTG
TATACATATCAAATCTTTAGGGGCTTGGCATATATTCATACAGTTCCTGG
GGTCTGCCATAGGGATGTGAAGCCTCAAAACCTCTTGGTTGATCCACTCA
CCCACCGGTTAAGCTTTGTGA
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