FC873744

Overview
NameFC873744
Unique NameFC873744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length814
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1056 contig Ccv1_Contig1056:30..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 6.339e-35
Identity = 74/163 (45.40%), Postives = 103/163 (63.19%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 729
            K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAGQERY A+   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 6.339e-35
Identity = 74/163 (45.40%), Postives = 103/163 (63.19%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 729
            K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAGQERY A+   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 6.339e-35
Identity = 74/163 (45.40%), Postives = 103/163 (63.19%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 729
            K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAGQERY A+   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.339e-35
Identity = 74/163 (45.40%), Postives = 103/163 (63.19%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 729
            K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAGQERY A+   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 6.339e-35
Identity = 74/163 (45.40%), Postives = 103/163 (63.19%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 729
            K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAGQERY A+   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 8.279e-35
Identity = 73/163 (44.79%), Postives = 104/163 (63.80%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 729
            K+VL+GDS VGKS ++ RF R +F+  SK T+G  F ++T+ + D+ TVK +IWDTAGQERY A+   YYRG       YDIT   SF+    W++EL+ H   +IV+ L+GNK+DL   R VP +D  E+AE+  +FF+ETSA  + N+   F  +   + R
Sbjct:   20 KVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHI-DARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYR 181          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.081e-34
Identity = 69/161 (42.86%), Postives = 106/161 (65.84%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            K+VL+G++GVGK+C+V RF +G F P    T+G  F+ +T+ + +   VK +IWDTAGQER+ ++   YYR        YDIT  +SF     W++E++++ S  ++  LVGNK DL E+REV  Q   E++E   M+++ETSAK +DN+ +LF ++A RL
Sbjct:   11 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.081e-34
Identity = 69/161 (42.86%), Postives = 106/161 (65.84%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            K+VL+G++GVGK+C+V RF +G F P    T+G  F+ +T+ + +   VK +IWDTAGQER+ ++   YYR        YDIT  +SF     W++E++++ S  ++  LVGNK DL E+REV  Q   E++E   M+++ETSAK +DN+ +LF ++A RL
Sbjct:   11 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.081e-34
Identity = 69/161 (42.86%), Postives = 106/161 (65.84%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            K+VL+G++GVGK+C+V RF +G F P    T+G  F+ +T+ + +   VK +IWDTAGQER+ ++   YYR        YDIT  +SF     W++E++++ S  ++  LVGNK DL E+REV  Q   E++E   M+++ETSAK +DN+ +LF ++A RL
Sbjct:   11 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.081e-34
Identity = 75/183 (40.98%), Postives = 112/183 (61.20%), Query Frame = 1
Query:  175 GQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            G SG      +  S+  ++L  K +++GDS VGKS ++L+FV  +F P S  T+G  F S++I + D   +K +IWDTAGQE++ ++   YYRG       YDIT  DSF     W+ + +K  S D+   L+GNKADL   R+V   +  E+AEKNG+ F ETSAKTA N+++ FE+  +++
Sbjct:    5 GSSGEKPTFNDRKSTSYEHL-FKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQ-IKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQI 185          
The following BLAST results are available for this feature:
BLAST of FC873744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_PIG6.339e-3545.40Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE6.339e-3545.40Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN6.339e-3545.40Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CHICK6.339e-3545.40Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_CANFA6.339e-3545.40Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RGP1_ORYSJ8.279e-3544.79Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RAB30_MOUSE1.081e-3442.86Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN1.081e-3442.86Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN1.081e-3442.86Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]
RAB2B_DICDI1.081e-3440.98Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AB01FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873744 ID=FC873744; Name=FC873744; organism=Citrus clementina; type=EST; length=814bp
CATCCGAAGCACTGCAGCAAATCAGCAATCAATCTGCTCATCGCAAAATC
ACTCCACTACTAATACCCTAATTACACATATACGTGCATACGCATACTTA
TATACATACTCGTTTATATATTTATTCTTACAGGTCGAATGGGTTGCTCA
GGTTCTGTTCCAGCTAGGAGTTCTGGCCAGTCCGGTGGACTTAACAACTT
GGAAAATGCAGGGTCATCTGATGCAAAAAACCTACGTGTTAAGCTGGTTC
TGTTAGGTGATTCAGGTGTTGGGAAAAGTTGTATTGTTCTTCGCTTTGTT
CGTGGCCAGTTTGACCCTACCTCCAAGGTAACTGTTGGAGCCTCATTCTT
GTCACAGACGATAGCTTTGCAAGATTCTACAACAGTTAAGTTTGAAATAT
GGGATACAGCTGGTCAAGAAAGATATGCTGCTCTGGCACCACTATATTAC
AGAGGTGCTGCAGTCGCAGTTGTTGTGTATGATATAACTAGTCCAGATTC
ATTCAACAAAGCGCAATACTGGGTTAAGGAGCTACAAAAACATGGAAGTC
CTGACATAGTCATGGCTTTAGTTGGTAACAAGGCTGATCTTCATGAGAAG
CGAGAAGTACCAGCTCAAGATGGCATTGAGTATGCGGAGAAGAATGGGAT
GTTCTTTATCGAAACATCGGCCAAGACTGCAGATAATATAAATCAGCTGT
TTGAGGAAATTGCTAAGCGACTTCCCCGCCCATCACCTTCTTCATGATTG
TGGATTCTGAAATCTGAACTGCTGTGTCTGCTGATGTAACGCCGAATCCT
GTCAGTTTGTCATA
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