FC873744

Overview
NameFC873744
Unique NameFC873744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length814
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: DJC27_DANRE (DnaJ homolog subfamily C member 27 OS=Danio rerio GN=dnajc27 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.420e-18
Identity = 52/165 (31.52%), Postives = 91/165 (55.15%), Query Frame = 1
Query:  226 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKEL-QKHGSP----DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 705
            K+LRVK++ LG++ VGKSCI+ R+   +F P    T+G  +    + ++D   +K  I+D AG   +  +   +Y+        YD+   +SF+    W+ E+ Q+ GS     +I+  +  NK DL ++R V   +G  +AE  G  + ETSA++ + IN++F+
Sbjct:   13 KSLRVKVISLGNAEVGKSCIIKRYCEKRFVPKYLATIGIDYGVTKVQVRDRE-IKVNIFDMAGHPFFYEVRNEFYKDSQGVILVYDVGLRESFDALDSWLTEMKQEMGSQANMENIIFVVCANKVDLTKRRVVDESEGRLWAESRGFHYFETSAQSGEGINEMFQ 176          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RALA_HUMAN (Ras-related protein Ral-A OS=Homo sapiens GN=RALA PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.161e-18
Identity = 52/162 (32.10%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNK-AQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            K++++G  GVGKS + L+F+  +F    + T   S+  + +   D   V+ +I DTAGQE YAA+   Y+R        + IT  +SF   A +  + L+     ++   LVGNK+DL +KR+V  ++    AE+  + ++ETSAKT  N++++F ++ + +
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAB23_HUMAN (Ras-related protein Rab-23 OS=Homo sapiens GN=RAB23 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.161e-18
Identity = 51/161 (31.68%), Postives = 86/161 (53.42%), Query Frame = 1
Query:  238 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKR 720
            +K+V++G+  VGKS ++ R+ +G F    K T+G  FL + I + D   V+  +WDTAGQE + A+   YYRG       +  T  +SF     W +++      DI   LV NK DL +   +  ++    A++  + F  TS K   N+N++F+ +A++
Sbjct:   10 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDED-VRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVG-DIPTVLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEK 168          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAC10_ARATH (Rac-like GTP-binding protein ARAC10 OS=Arabidopsis thaliana GN=ARAC10 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 58/177 (32.77%), Postives = 89/177 (50.28%), Query Frame = 1
Query:  238 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE----------VPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEEIAKRLPRP 732
            +K V +GD  VGK+C+++ +   +F      TV  +F +  +   + TTV   +WDTAGQE Y  L PL YRG       + + S  S+ N  + W+ ELQ H +P + + LVG K DL E +           V    G E  +  G  ++IE S+KT  N+  +F+   K + +P
Sbjct:    9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVV--EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLSFSLVSRASYENVFKKWIPELQ-HFAPGVPLVLVGTKLDLREDKHYLADHPGLSPVTTAQGEELRKLIGATYYIECSSKTQQNVKAVFDSAIKEVIKP 182          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAB6A_RAT (Ras-related protein Rab-6A (Fragment) OS=Rattus norvegicus GN=Rab6a PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  406 TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 726
            TAGQER+ +L P Y R        YDIT+ +SF +   W+ +++     D+++ LVGNK DL +KR+V  ++G   A++  + FIETSAK   N+ QLF  +A  LP
Sbjct:    1 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 107          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: DJC27_BOVIN (DnaJ homolog subfamily C member 27 OS=Bos taurus GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 51/165 (30.91%), Postives = 90/165 (54.55%), Query Frame = 1
Query:  226 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK----HGSPD-IVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 705
            K+LR+K++ +G++ VGKSCI+ R+   +F      T+G  +    + ++D   +K  I+D AG   +  +   +Y+        YD+   DSF+    W+ E+++    HG+ + IV A+  NK D  + R V   +G  +AE  G  + ETSA+T + IN++F+
Sbjct:   13 KSLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDRE-IKVNIFDMAGDPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDTWLAEMKQDLGPHGNMENIVFAVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMFQ 176          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RASV_DICDI (Ras-like protein rasV OS=Dictyostelium discoideum GN=rasV PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.391e-18
Identity = 55/170 (32.35%), Postives = 94/170 (55.29%), Query Frame = 1
Query:  202 ENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 708
            EN  +++ KN  V+L ++GD GVGK+ +  +F+   F      T+  S+  Q I + D + +  +I DTAGQ+   A+   + R        Y IT   SFN+   + +++ +     D+ + ++GNK+DL  +R+V   +G E A++ GM F+E SAK   NI+++F E
Sbjct:   22 ENNCNNNNKNNIVQLCIMGDGGVGKTAVTTQFISNHFVYYYDPTIEDSYRKQ-ICVSDKSYI-LDILDTAGQDELTAMRDQWIRSCEGFVLVYSITCKSSFNQVLNFREQIIRVLDRDDVPIMMIGNKSDLVNERQVTYHEGKELAQRLGMSFMEVSAKNRSNIDEVFHE 189          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RHO1_DROME (Ras-like GTP-binding protein Rho1 OS=Drosophila melanogaster GN=Rho1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.041e-18
Identity = 58/172 (33.72%), Postives = 88/172 (51.16%), Query Frame = 1
Query:  232 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH------------EKREVPAQDGIEYAEK-NGMFFIETSAKTADNINQLFE 705
            +R KLV++GD   GK+C+++ F + QF      TV  ++++      D   V+  +WDTAGQE Y  L PL Y         + + SPDS  N  + W  E+ KH  P++ + LVGNK DL             ++  V  Q+G   AEK N   ++E SAK+ + +  +FE
Sbjct:    4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDPNTIRDLAKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVRDVFE 172          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAS_LACBI (Ras-like protein OS=Laccaria bicolor PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.041e-18
Identity = 53/164 (32.32%), Postives = 85/164 (51.83%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 729
            KLV++G  G GKSC+ ++ ++  F      T+  S+  Q +   D      ++ DTAGQE Y+A+   Y R        Y ITS  SF +   + +++ +    D   + +VGNK DL ++R V  Q+G   A + G  FIETSAK+  N+   F ++ + + R
Sbjct:   10 KLVVVGGGGEGKSCLTIQLIQSHFVDEYDPTIEESYRKQCVI--DDEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKDKDYFPIIVVGNKCDLDKERVVSKQEGESLARQFGCKFIETSAKSRINVENAFYDLVREIRR 171          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAS1_NEUCR (Protein ras-1 OS=Neurospora crassa GN=ras-1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.041e-18
Identity = 54/162 (33.33%), Postives = 86/162 (53.09%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPD-IVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            KLV++G  GVGKSC+ ++ ++G F      T+  S+  Q     D+     +I DTAGQE Y+A+   Y R        + I S +SF + + + +++ +    D   M +VGNK DL  +R V  Q+G   A + G  +IETSAKT  N+   F ++ + +
Sbjct:   10 KLVVVGGGGVGKSCLTIQLIQGHFLDEYDPTIEDSYRKQCTI--DNEVALLDILDTAGQEEYSAMREQYMRTGEGFLLVFAINSRESFEEIRIYQQQILRVKDRDSFPMIIVGNKYDLRGERVVSEQEGQALAAEFGTKYIETSAKTQHNVENAFYDLVREI 169          
The following BLAST results are available for this feature:
BLAST of FC873744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DJC27_DANRE2.420e-1831.52DnaJ homolog subfamily C member 27 OS=Danio rerio ... [more]
RALA_HUMAN3.161e-1832.10Ras-related protein Ral-A OS=Homo sapiens GN=RALA ... [more]
RAB23_HUMAN3.161e-1831.68Ras-related protein Rab-23 OS=Homo sapiens GN=RAB2... [more]
RAC10_ARATH4.128e-1832.77Rac-like GTP-binding protein ARAC10 OS=Arabidopsis... [more]
RAB6A_RAT4.128e-1841.12Ras-related protein Rab-6A (Fragment) OS=Rattus no... [more]
DJC27_BOVIN4.128e-1830.91DnaJ homolog subfamily C member 27 OS=Bos taurus G... [more]
RASV_DICDI5.391e-1832.35Ras-like protein rasV OS=Dictyostelium discoideum ... [more]
RHO1_DROME7.041e-1833.72Ras-like GTP-binding protein Rho1 OS=Drosophila me... [more]
RAS_LACBI7.041e-1832.32Ras-like protein OS=Laccaria bicolor PE=2 SV=1[more]
RAS1_NEUCR7.041e-1833.33Protein ras-1 OS=Neurospora crassa GN=ras-1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AB01FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873744 ID=FC873744; Name=FC873744; organism=Citrus clementina; type=EST; length=814bp
CATCCGAAGCACTGCAGCAAATCAGCAATCAATCTGCTCATCGCAAAATC
ACTCCACTACTAATACCCTAATTACACATATACGTGCATACGCATACTTA
TATACATACTCGTTTATATATTTATTCTTACAGGTCGAATGGGTTGCTCA
GGTTCTGTTCCAGCTAGGAGTTCTGGCCAGTCCGGTGGACTTAACAACTT
GGAAAATGCAGGGTCATCTGATGCAAAAAACCTACGTGTTAAGCTGGTTC
TGTTAGGTGATTCAGGTGTTGGGAAAAGTTGTATTGTTCTTCGCTTTGTT
CGTGGCCAGTTTGACCCTACCTCCAAGGTAACTGTTGGAGCCTCATTCTT
GTCACAGACGATAGCTTTGCAAGATTCTACAACAGTTAAGTTTGAAATAT
GGGATACAGCTGGTCAAGAAAGATATGCTGCTCTGGCACCACTATATTAC
AGAGGTGCTGCAGTCGCAGTTGTTGTGTATGATATAACTAGTCCAGATTC
ATTCAACAAAGCGCAATACTGGGTTAAGGAGCTACAAAAACATGGAAGTC
CTGACATAGTCATGGCTTTAGTTGGTAACAAGGCTGATCTTCATGAGAAG
CGAGAAGTACCAGCTCAAGATGGCATTGAGTATGCGGAGAAGAATGGGAT
GTTCTTTATCGAAACATCGGCCAAGACTGCAGATAATATAAATCAGCTGT
TTGAGGAAATTGCTAAGCGACTTCCCCGCCCATCACCTTCTTCATGATTG
TGGATTCTGAAATCTGAACTGCTGTGTCTGCTGATGTAACGCCGAATCCT
GTCAGTTTGTCATA
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