FC873744

Overview
NameFC873744
Unique NameFC873744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length814
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RALA_SAGOE (Ras-related protein Ral-A OS=Saguinus oedipus GN=RALA PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.041e-18
Identity = 51/162 (31.48%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNK-AQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            K++++G  GVGKS + L+F+  +F    + T   S+  + +   D   V+ +I DTAGQE YAA+   Y+R        + IT  +SF   A +  + L+     ++   LVGNK+DL +KR+V  ++    A++  + ++ETSAKT  N++++F ++ + +
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 175          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RALA_RAT (Ras-related protein Ral-A OS=Rattus norvegicus GN=Rala PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.041e-18
Identity = 51/162 (31.48%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNK-AQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            K++++G  GVGKS + L+F+  +F    + T   S+  + +   D   V+ +I DTAGQE YAA+   Y+R        + IT  +SF   A +  + L+     ++   LVGNK+DL +KR+V  ++    A++  + ++ETSAKT  N++++F ++ + +
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 175          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RALA_MOUSE (Ras-related protein Ral-A OS=Mus musculus GN=Rala PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.041e-18
Identity = 51/162 (31.48%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNK-AQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            K++++G  GVGKS + L+F+  +F    + T   S+  + +   D   V+ +I DTAGQE YAA+   Y+R        + IT  +SF   A +  + L+     ++   LVGNK+DL +KR+V  ++    A++  + ++ETSAKT  N++++F ++ + +
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 175          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAC9_ARATH (Rac-like GTP-binding protein ARAC9 OS=Arabidopsis thaliana GN=ARAC9 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.041e-18
Identity = 60/185 (32.43%), Postives = 92/185 (49.73%), Query Frame = 1
Query:  214 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP----------AQDGIEYAEKNG-MFFIETSAKTADNINQLFEEIAKRLPRP 732
            SS      +K V +GD  VGK+C+++ +    F      TV  +F +  +   D  TV   +WDTAGQE Y  + PL YRG       + + S  SF N A+ WV EL +H +P + + LVG K+DL +  + P           + G E  ++ G + +IE S+K   N+  +F+E  K +  P
Sbjct:   11 SSATATTFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFNANVLV--DGKTVNLGLWDTAGQEDYNRVRPLSYRGADVFILAFSLISRPSFENIAKKWVPEL-RHYAPTVPIVLVGTKSDLRDNMQFPKNYPGACTIFPEQGQELRKEIGALAYIECSSKAQMNVKAVFDEAIKVVLHP 192          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAB28_HUMAN (Ras-related protein Rab-28 OS=Homo sapiens GN=RAB28 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 7.041e-18
Identity = 50/171 (29.24%), Postives = 85/171 (49.71%), Query Frame = 1
Query:  220 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYW---VKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            ++++ ++K+V+LGD   GK+ +   F +  F    K T+G  F  + I L  +  V  +IWD  GQ     +   Y  G       YDIT+  SF   + W   VK++ +      ++ALVGNK DL   R +  +  + + ++NG      SAKT D++   F+++A  +
Sbjct:    7 ESQDRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 177          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAB23_MOUSE (Ras-related protein Rab-23 OS=Mus musculus GN=Rab23 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 7.041e-18
Identity = 51/161 (31.68%), Postives = 87/161 (54.04%), Query Frame = 1
Query:  238 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKR 720
            +K+V++G+  VGKS ++ R+ +G F    K T+G  FL + I + D   V+  +WDTAGQE + A+   YYRG       +  T  +SF     W +++      DI  ALV NK DL +   +  ++    A++  + F  TS K   N++++F+ +A++
Sbjct:   10 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDED-VRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 168          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RASB_DICDI (Ras-like protein rasB OS=Dictyostelium discoideum GN=rasB PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.196e-18
Identity = 56/164 (34.15%), Postives = 87/164 (53.05%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 729
            KLV++G  GVGKS + ++F++  F      T+  S+  Q     D  T   +I DTAGQ+ Y+A+   Y R        YD+TS  SF +     +++ +    D V + LVGNK DL   REV   +G E A+   + F+ETSAK   N+++ F E+ + + +
Sbjct:    8 KLVVMGGGGVGKSALTIQFIQNHFIEEYDPTIEDSYRRQCQV--DEDTCLLDILDTAGQDDYSAMRDQYMRTGQGFLCVYDVTSRTSFEEINVVREQIIRVKDNDKVPIVLVGNKCDLENLREVTEGEGSELAKSFSVPFLETSAKKRLNVDECFFEVVREIKK 169          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAS1_PHYPO (Ras-like protein 1 OS=Physarum polycephalum GN=RAS1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.196e-18
Identity = 55/166 (33.13%), Postives = 88/166 (53.01%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPS 735
            KLV++G  GVGKS + ++ ++  F      T+  S+  Q     D  T   +I DTAGQE Y+A+   Y R        Y ITS  SF++   + +++ +    D V M +VGNK DL  +R+V   +G + A   G  F+ETSAK+  N+ + F ++ + + + S
Sbjct:    5 KLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYRKQVTI--DEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDKVPMIVVGNKCDLEGERQVTTGEGQDLARSFGCPFMETSAKSRVNVEESFYQLVREIRKDS 168          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAB28_MOUSE (Ras-related protein Rab-28 OS=Mus musculus GN=Rab28 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.196e-18
Identity = 51/171 (29.82%), Postives = 84/171 (49.12%), Query Frame = 1
Query:  220 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYW---VKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            ++++ ++K+V+LGD   GK+ +   F +  F    K T+G  F  + I L  +  V  ++WD  GQ     +   Y  G       YDIT+  SF   + W   VK + +      ++ALVGNK DL   R V A   + + ++NG      SAKT D++   F+++A  +
Sbjct:    7 ESQDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKADKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 177          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RB32B_DICDI (Ras-related protein Rab-32B OS=Dictyostelium discoideum GN=rab32B PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.201e-17
Identity = 52/189 (27.51%), Postives = 87/189 (46.03%), Query Frame = 1
Query:  169 SSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKH----GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            S+  +   NN  N   +D +    K++L+GD  VGKS I+ R+  G F P  K+T+G  F  + I  + +  V  ++WD AG ER+  +  +YYR        +D++ P +F+    W +++           I + L+ NK+DL               E N + +  TSA    NIN+    + K +
Sbjct:   37 SNSNNNNNNNNNNVDDTDIEKHLYKVLLIGDYAVGKSSIIKRYCTGIFSPNYKLTIGVDFSVKDIEWEKNKIVSLQLWDIAGHERFGTMTRVYYRYAIAAIIVFDLSRPSTFDAVTKWREDVNSKVVLANQEPIPVLLLANKSDLSTSYVDSEMLDRFCKENNFIGWFATSASNDTNINEAMHFLTKEI 225          
The following BLAST results are available for this feature:
BLAST of FC873744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RALA_SAGOE7.041e-1831.48Ras-related protein Ral-A OS=Saguinus oedipus GN=R... [more]
RALA_RAT7.041e-1831.48Ras-related protein Ral-A OS=Rattus norvegicus GN=... [more]
RALA_MOUSE7.041e-1831.48Ras-related protein Ral-A OS=Mus musculus GN=Rala ... [more]
RAC9_ARATH7.041e-1832.43Rac-like GTP-binding protein ARAC9 OS=Arabidopsis ... [more]
RAB28_HUMAN7.041e-1829.24Ras-related protein Rab-28 OS=Homo sapiens GN=RAB2... [more]
RAB23_MOUSE7.041e-1831.68Ras-related protein Rab-23 OS=Mus musculus GN=Rab2... [more]
RASB_DICDI9.196e-1834.15Ras-like protein rasB OS=Dictyostelium discoideum ... [more]
RAS1_PHYPO9.196e-1833.13Ras-like protein 1 OS=Physarum polycephalum GN=RAS... [more]
RAB28_MOUSE9.196e-1829.82Ras-related protein Rab-28 OS=Mus musculus GN=Rab2... [more]
RB32B_DICDI1.201e-1727.51Ras-related protein Rab-32B OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AB01FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873744 ID=FC873744; Name=FC873744; organism=Citrus clementina; type=EST; length=814bp
CATCCGAAGCACTGCAGCAAATCAGCAATCAATCTGCTCATCGCAAAATC
ACTCCACTACTAATACCCTAATTACACATATACGTGCATACGCATACTTA
TATACATACTCGTTTATATATTTATTCTTACAGGTCGAATGGGTTGCTCA
GGTTCTGTTCCAGCTAGGAGTTCTGGCCAGTCCGGTGGACTTAACAACTT
GGAAAATGCAGGGTCATCTGATGCAAAAAACCTACGTGTTAAGCTGGTTC
TGTTAGGTGATTCAGGTGTTGGGAAAAGTTGTATTGTTCTTCGCTTTGTT
CGTGGCCAGTTTGACCCTACCTCCAAGGTAACTGTTGGAGCCTCATTCTT
GTCACAGACGATAGCTTTGCAAGATTCTACAACAGTTAAGTTTGAAATAT
GGGATACAGCTGGTCAAGAAAGATATGCTGCTCTGGCACCACTATATTAC
AGAGGTGCTGCAGTCGCAGTTGTTGTGTATGATATAACTAGTCCAGATTC
ATTCAACAAAGCGCAATACTGGGTTAAGGAGCTACAAAAACATGGAAGTC
CTGACATAGTCATGGCTTTAGTTGGTAACAAGGCTGATCTTCATGAGAAG
CGAGAAGTACCAGCTCAAGATGGCATTGAGTATGCGGAGAAGAATGGGAT
GTTCTTTATCGAAACATCGGCCAAGACTGCAGATAATATAAATCAGCTGT
TTGAGGAAATTGCTAAGCGACTTCCCCGCCCATCACCTTCTTCATGATTG
TGGATTCTGAAATCTGAACTGCTGTGTCTGCTGATGTAACGCCGAATCCT
GTCAGTTTGTCATA
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