FC873744

Overview
NameFC873744
Unique NameFC873744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length814
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RABM_DICDI (Ras-related protein RabM OS=Dictyostelium discoideum GN=rabM PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.564e-17
Identity = 51/168 (30.36%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  238 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN--------GMFFIETSAKTADNINQLFEEIAK 717
            +K++ LGDS VGK+ +   FV G+++  ++ TV  SF S+T+ +++   +   +WDT  QER+  L+P+YYR        +DI +  SF     W+ E +K     +   L+G K D+    +  +++ IE   KN         + + ETSAK + NI + +    K
Sbjct:    6 LKIITLGDSYVGKTSVFNNFVTGKYE-INECTVSPSFYSKTLTIENEPVI-LNVWDTCSQERFNGLSPIYYRWSNCYTLCFDIHNEKSFKNLDKWMDEARKFCIGKVPFVLIGTKKDIPRTDKSISKERIEQWCKNIEDQGIIDRVHYFETSAKFSQNITESYNAALK 171          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: DJC27_PONAB (DnaJ homolog subfamily C member 27 OS=Pongo abelii GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.564e-17
Identity = 47/165 (28.48%), Postives = 87/165 (52.73%), Query Frame = 1
Query:  226 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP-----DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 705
            ++LR+K++ +G++ VGKSCI+ R+   +F      T+G  +    + ++D   +K  I+D AG   +  +   +Y+        YD+   DSF+    W+ E+++   P     +I+  +  NK D  + R V   +G  +AE  G  + ETSA+T + IN++F+
Sbjct:   13 RSLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVHVRDRE-IKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQELGPHGNMENIIFVVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMFQ 176          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: DJC27_HUMAN (DnaJ homolog subfamily C member 27 OS=Homo sapiens GN=DNAJC27 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.564e-17
Identity = 47/165 (28.48%), Postives = 87/165 (52.73%), Query Frame = 1
Query:  226 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP-----DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 705
            ++LR+K++ +G++ VGKSCI+ R+   +F      T+G  +    + ++D   +K  I+D AG   +  +   +Y+        YD+   DSF+    W+ E+++   P     +I+  +  NK D  + R V   +G  +AE  G  + ETSA+T + IN++F+
Sbjct:   13 RSLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVHVRDRE-IKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQELGPHGNMENIIFVVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMFQ 176          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RASL_COPCI (24 kDa Ras-like protein OS=Coprinopsis cinerea GN=CC-RAS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 52/162 (32.10%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPD-IVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            KLV++G  GVGKS + ++F++  F      T+  S+  Q I   D      ++ DTAGQE Y A+   Y R        Y ITS +SF +   + +++ +    D   + +V NK DL  +R+V   +G + A+  G  FIETSAK   N+++ F  + + +
Sbjct:   12 KLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCII--DDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISIFHQQILRVKDQDSFPVIVVANKCDLEYERQVGMNEGRDLAKHFGCKFIETSAKQRINVDEAFSNLVREI 171          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RASD_DICDI (Ras-like protein rasD OS=Dictyostelium discoideum GN=rasD PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 53/162 (32.72%), Postives = 90/162 (55.56%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            KLV++G  GVGKS + ++ ++  F      T+  S+  Q +++ D T +  +I DTAGQE Y+A+   Y R        Y ITS  S+++   + +++ +    D V + LVGNKADL  +R+V   +G E A+     F+E+SAK+  N+ + F  + + +
Sbjct:    5 KLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYRKQ-VSIDDETCL-LDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSYDEIASFREQILRVKDKDRVPLILVGNKADLDHERQVSVNEGQELAKGFNCPFMESSAKSRINVEEAFYSLVREI 164          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RASC_DICDI (Ras-like protein rasC OS=Dictyostelium discoideum GN=rasC PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 56/166 (33.73%), Postives = 86/166 (51.81%), Query Frame = 1
Query:  238 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHEK-REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 729
            +KLV++GD GVGKS + ++  + QF      T+  S+  Q     D      +I DTAGQE Y+A+   Y R        Y I S  SF     + ++ L+        + ++GNKADL +K R+VP  +G E A+  G  F+ETSAK+  N+ + F  + + + R
Sbjct:    5 LKLVIVGDGGVGKSALTIQLTQNQFIAEYDPTIENSYRKQVNI--DEEVYMLDILDTAGQEEYSAMRDQYIRSGRGFLIVYSIISRASFEAVTTFREQILRVKDLSTYPIVIIGNKADLPDKDRKVPPMEGKELAKSFGAPFLETSAKSRVNVEEAFFTLVREIKR 168          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAS2_RHIRA (Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 54/164 (32.93%), Postives = 83/164 (50.61%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPD-IVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 729
            K+V++GD GVGKS + ++F++  F      T+  S+  Q   L DS     +I DTAGQE Y+A+   + R        Y ITS  +F + Q   +++ +    +   M LVGNK DL + R+VP   G + A++    F E SAK    I   F  + + + R
Sbjct:   13 KIVMVGDGGVGKSAMTIQFIQSTFVDEYDPTIEDSYRKQ--CLIDSECAMLDILDTAGQEEYSAMRERFMRNGEGFVLIYSITSYHTFEQVQKLHEQIARVKDLEHFPMVLVGNKCDLEQDRQVPTSAGRDLAKQYNCQFFEASAKQNVRIQDAFHGLVREIRR 174          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAC4_ARATH (Rac-like GTP-binding protein ARAC4 OS=Arabidopsis thaliana GN=ARAC4 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 56/177 (31.64%), Postives = 88/177 (49.72%), Query Frame = 1
Query:  238 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE----------VPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEEIAKRLPRP 732
            +K V +GD  VGK+C+++ +    F      TV  +F +  +   D  TV   +WDTAGQE Y  L PL YRG       + + S  S+ N A+ W+ EL +H +P + + LVG K DL + ++          +    G E  +  G   +IE S+KT  N+  +F+   K + +P
Sbjct:    6 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSAVYIECSSKTQQNVKAVFDAAIKVVLQP 179          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAC11_ARATH (Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 55/177 (31.07%), Postives = 91/177 (51.41%), Query Frame = 1
Query:  238 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE----------VPAQDGIEYAEKNGM-FFIETSAKTADNINQLFEEIAKRLPRP 732
            VK V +GD  VGK+C+++ +    F      TV  +F +  +   + +TV   +WDTAGQE Y  L PL YRG       + + S  S+ N ++ W+ EL KH +P + + LVG K DL + ++          +    G E  ++ G   +IE S+KT +N+  +F+   + + +P
Sbjct:    7 VKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV--NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVVLQP 180          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAB34_MOUSE (Ras-related protein Rab-34 OS=Mus musculus GN=Rab34 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 45/161 (27.95%), Postives = 84/161 (52.17%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP-DIVMALVGNKADLHEKRE--VPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 714
            K++++GD  VGK+C++ RF +  FD   K T+G  F  +   +        ++WDTAGQER+  +A  YYRG       +++    S    + W+ +  K   P ++++ LVG+K DL    +  +  +D ++ A++    +   S+ T +N+ + F  +A
Sbjct:   54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVL-GVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLTDALKENDPSNVLLFLVGSKKDLSTPAQYSLMEKDALKVAQEIKAEYWAVSSLTGENVREFFFRVA 213          
The following BLAST results are available for this feature:
BLAST of FC873744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RABM_DICDI4.564e-1730.36Ras-related protein RabM OS=Dictyostelium discoide... [more]
DJC27_PONAB4.564e-1728.48DnaJ homolog subfamily C member 27 OS=Pongo abelii... [more]
DJC27_HUMAN4.564e-1728.48DnaJ homolog subfamily C member 27 OS=Homo sapiens... [more]
RASL_COPCI5.961e-1732.1024 kDa Ras-like protein OS=Coprinopsis cinerea GN=... [more]
RASD_DICDI5.961e-1732.72Ras-like protein rasD OS=Dictyostelium discoideum ... [more]
RASC_DICDI5.961e-1733.73Ras-like protein rasC OS=Dictyostelium discoideum ... [more]
RAS2_RHIRA5.961e-1732.93Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2... [more]
RAC4_ARATH5.961e-1731.64Rac-like GTP-binding protein ARAC4 OS=Arabidopsis ... [more]
RAC11_ARATH5.961e-1731.07Rac-like GTP-binding protein ARAC11 OS=Arabidopsis... [more]
RAB34_MOUSE5.961e-1727.95Ras-related protein Rab-34 OS=Mus musculus GN=Rab3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AB01FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873744 ID=FC873744; Name=FC873744; organism=Citrus clementina; type=EST; length=814bp
CATCCGAAGCACTGCAGCAAATCAGCAATCAATCTGCTCATCGCAAAATC
ACTCCACTACTAATACCCTAATTACACATATACGTGCATACGCATACTTA
TATACATACTCGTTTATATATTTATTCTTACAGGTCGAATGGGTTGCTCA
GGTTCTGTTCCAGCTAGGAGTTCTGGCCAGTCCGGTGGACTTAACAACTT
GGAAAATGCAGGGTCATCTGATGCAAAAAACCTACGTGTTAAGCTGGTTC
TGTTAGGTGATTCAGGTGTTGGGAAAAGTTGTATTGTTCTTCGCTTTGTT
CGTGGCCAGTTTGACCCTACCTCCAAGGTAACTGTTGGAGCCTCATTCTT
GTCACAGACGATAGCTTTGCAAGATTCTACAACAGTTAAGTTTGAAATAT
GGGATACAGCTGGTCAAGAAAGATATGCTGCTCTGGCACCACTATATTAC
AGAGGTGCTGCAGTCGCAGTTGTTGTGTATGATATAACTAGTCCAGATTC
ATTCAACAAAGCGCAATACTGGGTTAAGGAGCTACAAAAACATGGAAGTC
CTGACATAGTCATGGCTTTAGTTGGTAACAAGGCTGATCTTCATGAGAAG
CGAGAAGTACCAGCTCAAGATGGCATTGAGTATGCGGAGAAGAATGGGAT
GTTCTTTATCGAAACATCGGCCAAGACTGCAGATAATATAAATCAGCTGT
TTGAGGAAATTGCTAAGCGACTTCCCCGCCCATCACCTTCTTCATGATTG
TGGATTCTGAAATCTGAACTGCTGTGTCTGCTGATGTAACGCCGAATCCT
GTCAGTTTGTCATA
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