FC873744

Overview
NameFC873744
Unique NameFC873744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length814
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RRAS_HUMAN (Ras-related protein R-Ras OS=Homo sapiens GN=RRAS PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.017e-16
Identity = 53/176 (30.11%), Postives = 88/176 (50.00%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR-------PSPSS 744
            KLV++G  GVGKS + ++F++  F      T+  S+    I   D    + +I DTAGQE + A+   Y R        + I    SFN+  + + + L+     D  + LVGNKADL  +R+VP  +   +   + + + E SAK   N+++ FE++ + + +       PSP S
Sbjct:   31 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTK--ICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQELPPSPPS 204          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RIT2_HUMAN (GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.017e-16
Identity = 60/181 (33.15%), Postives = 91/181 (50.28%), Query Frame = 1
Query:  211 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKEL--QKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA----DNINQLFEEIAKRLPRPS 735
            GS+   +   K+V+LG  GVGKS + ++F+  QF      T+  ++ +Q     D+     +I DTAGQ  + A+   Y RG       Y +T   SF +A  + KEL  Q   + +I + LVGNK DL + R+V  ++G+  A++    F ETSA       D  + L  EI K+   PS
Sbjct:   12 GSASGGSREYKVVMLGAGGVGKSAMTMQFISHQFPDYHDPTIEDAYKTQVRI--DNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKF-KELIFQVRHTYEIPLVLVGNKIDLEQFRQVSTEEGLSLAQEYNCGFFETSAALRFCIDDAFHGLVREIRKKESMPS 189          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RASK_RIVMA (GTPase KRas OS=Rivulus marmoratus GN=kras PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.017e-16
Identity = 61/187 (32.62%), Postives = 92/187 (49.20%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRLPRPSPSS*LWILKSELLCLLM 786
            KLV++G  GVGKS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R        + I +  SF    ++ +++++   S D+ M LVGNK DL   R V  +   + A   G+ FIETSAKT   ++  F     EI K   + S        KS+  C+LM
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKYDL-PTRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKEGKKKKKKSKTKCILM 188          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.017e-16
Identity = 47/161 (29.19%), Postives = 87/161 (54.04%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            KL+L+GD G GK+ +V R + G+F      T+G   + Q +   +    + ++WDTAGQERY  L   Y+         +D+ S +++N  + W ++L +    +I + + GNK D+  K+    + G+++  K  ++ IE SAK+  N+ + F  + ++L
Sbjct:   12 KLILIGDGGTGKTTLVKRHLTGEFKMQYNATLGVE-VEQLLFNTNRGVFRIDVWDTAGQERYGGLRDGYFVQSQCAIIMFDVASSNTYNNVKRWHRDLVR-VCGNIPIVICGNKVDIMHKK--TWKKGVDFDRKTNIYLIEMSAKSNYNVEKPFVYLLRKL 168          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.017e-16
Identity = 56/177 (31.64%), Postives = 89/177 (50.28%), Query Frame = 1
Query:  238 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE----------VPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEEIAKRLPRP 732
            +K V +GD  VGK+C+++ +    F      TV  +F +  +   D +TV   +WDTAGQE Y  L PL YRG       + + S  S+ N ++ W+ EL +H +P + + LVG K DL + ++          +    G E  +  G   +IE S+KT  NI  +F+   K + +P
Sbjct:    7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFDAAIKVVLQP 180          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAC1_LOTJA (Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.017e-16
Identity = 56/177 (31.64%), Postives = 88/177 (49.72%), Query Frame = 1
Query:  238 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE----------VPAQDGIEYAEKNGM-FFIETSAKTADNINQLFEEIAKRLPRP 732
            +K V +GD  VGK+C+++ +    F      TV  +F +  +   D +TV   +WDTAGQE Y  L PL YRG       + + S  S+ N A+ W+ EL +H +P + + LVG K DL + +           +    G E  +  G   +IE S+KT  N+  +F+   K + +P
Sbjct:    7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV--DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAB34_PIG (Ras-related protein Rab-34 OS=Sus scrofa GN=RAB34 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.017e-16
Identity = 45/161 (27.95%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP-DIVMALVGNKADLHEKRE--VPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 714
            K++++GD  VGK+C++ RF +  FD   K T+G  F  +   +        ++WDTAGQER+  +A  YYRG       +++    S    + W+ +  K   P  +++ LVG+K DL    +  +  +D ++ A +    +   S+ T +N+ + F  +A
Sbjct:   54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVL-GVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLVGSKKDLSTPAQYVLMEKDALKVAHEMKAEYWAVSSLTGENVREFFFRVA 213          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RRAS2_MOUSE (Ras-related protein R-Ras2 OS=Mus musculus GN=Rras2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.328e-16
Identity = 48/162 (29.63%), Postives = 86/162 (53.09%), Query Frame = 1
Query:  235 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPD-IVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 717
            + +LV++G  GVGKS + ++F++  F      T+  S+  Q +   D    + +I DTAGQE + A+   Y R        + +T   SF +   + +++ +    D   M L+GNKADL  +R+V  ++G + A +  + ++E SAK   N++Q F E+ +
Sbjct:   14 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVI--DDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVR 173          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RRAS2_HUMAN (Ras-related protein R-Ras2 OS=Homo sapiens GN=RRAS2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.328e-16
Identity = 48/162 (29.63%), Postives = 86/162 (53.09%), Query Frame = 1
Query:  235 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPD-IVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 717
            + +LV++G  GVGKS + ++F++  F      T+  S+  Q +   D    + +I DTAGQE + A+   Y R        + +T   SF +   + +++ +    D   M L+GNKADL  +R+V  ++G + A +  + ++E SAK   N++Q F E+ +
Sbjct:   14 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVI--DDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVR 173          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RASK_MSVKI (GTPase KRas OS=Kirsten murine sarcoma virus GN=K-RAS PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.328e-16
Identity = 54/162 (33.33%), Postives = 82/162 (50.62%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            KLV++G SGVGKS + ++ ++  F      T+  S+  Q +   D  T   +I DT GQE Y+A+   Y R        + I +  SF    ++ ++L++   S D+ M LVGNK DL   R V  +   E A   G+ FIETSAKT   +   F  + + +
Sbjct:    5 KLVVVGASGVGKSALTIQLIQNHFVDEYDPTIQDSYRKQVVI--DGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQLKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQELARSYGIPFIETSAKTRQRVEDAFYTLVREI 163          
The following BLAST results are available for this feature:
BLAST of FC873744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRAS_HUMAN1.017e-1630.11Ras-related protein R-Ras OS=Homo sapiens GN=RRAS ... [more]
RIT2_HUMAN1.017e-1633.15GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 P... [more]
RASK_RIVMA1.017e-1632.62GTPase KRas OS=Rivulus marmoratus GN=kras PE=2 SV=... [more]
RANL_DROME1.017e-1629.19GTP-binding nuclear protein Ran-like OS=Drosophila... [more]
RAC5_ORYSJ1.017e-1631.64Rac-like GTP-binding protein 5 OS=Oryza sativa sub... [more]
RAC1_LOTJA1.017e-1631.64Rac-like GTP-binding protein RAC1 OS=Lotus japonic... [more]
RAB34_PIG1.017e-1627.95Ras-related protein Rab-34 OS=Sus scrofa GN=RAB34 ... [more]
RRAS2_MOUSE1.328e-1629.63Ras-related protein R-Ras2 OS=Mus musculus GN=Rras... [more]
RRAS2_HUMAN1.328e-1629.63Ras-related protein R-Ras2 OS=Homo sapiens GN=RRAS... [more]
RASK_MSVKI1.328e-1633.33GTPase KRas OS=Kirsten murine sarcoma virus GN=K-R... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2AB01FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873744 ID=FC873744; Name=FC873744; organism=Citrus clementina; type=EST; length=814bp
CATCCGAAGCACTGCAGCAAATCAGCAATCAATCTGCTCATCGCAAAATC
ACTCCACTACTAATACCCTAATTACACATATACGTGCATACGCATACTTA
TATACATACTCGTTTATATATTTATTCTTACAGGTCGAATGGGTTGCTCA
GGTTCTGTTCCAGCTAGGAGTTCTGGCCAGTCCGGTGGACTTAACAACTT
GGAAAATGCAGGGTCATCTGATGCAAAAAACCTACGTGTTAAGCTGGTTC
TGTTAGGTGATTCAGGTGTTGGGAAAAGTTGTATTGTTCTTCGCTTTGTT
CGTGGCCAGTTTGACCCTACCTCCAAGGTAACTGTTGGAGCCTCATTCTT
GTCACAGACGATAGCTTTGCAAGATTCTACAACAGTTAAGTTTGAAATAT
GGGATACAGCTGGTCAAGAAAGATATGCTGCTCTGGCACCACTATATTAC
AGAGGTGCTGCAGTCGCAGTTGTTGTGTATGATATAACTAGTCCAGATTC
ATTCAACAAAGCGCAATACTGGGTTAAGGAGCTACAAAAACATGGAAGTC
CTGACATAGTCATGGCTTTAGTTGGTAACAAGGCTGATCTTCATGAGAAG
CGAGAAGTACCAGCTCAAGATGGCATTGAGTATGCGGAGAAGAATGGGAT
GTTCTTTATCGAAACATCGGCCAAGACTGCAGATAATATAAATCAGCTGT
TTGAGGAAATTGCTAAGCGACTTCCCCGCCCATCACCTTCTTCATGATTG
TGGATTCTGAAATCTGAACTGCTGTGTCTGCTGATGTAACGCCGAATCCT
GTCAGTTTGTCATA
back to top