FC873744

Overview
NameFC873744
Unique NameFC873744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length814
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1056 contig Ccv1_Contig1056:30..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RACC_DICDI (Rho-related protein racC OS=Dictyostelium discoideum GN=racC PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.328e-16
Identity = 59/197 (29.95%), Postives = 95/197 (48.22%), Query Frame = 1
Query:  238 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKR------------EVPAQDGIEYAEK-NGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS*LWILKSELLCLLM 786
            +KLV++GD  VGK+C+++ +   +F      TV  +++    A      ++  +WDTAGQE Y  L PL Y         + IT+P SF N    W  E+  H  P++   LVG K D  + R             +  + G + A +   + ++E SAKT+ N+ Q+F+E  K        S L+I K +  C++M
Sbjct:    7 IKLVVIGDGAVGKTCLLISYANNRFPEDYIPTVFDNYVVNLTA--GDRNIELGLWDTAGQEEYDKLRPLSYANANVFLICFSITNPVSFENVYTKWYPEVM-HFCPEVPQILVGTKLDTRDDRGVLDKLQQTGHKPITTEQGNDLARRIKAIKYMECSAKTSQNLKQVFDEAIK--------SVLFIKKKKSKCIVM 192          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAC7_ORYSJ (Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.328e-16
Identity = 55/172 (31.98%), Postives = 84/172 (48.84%), Query Frame = 1
Query:  238 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE----------VPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEEIAK 717
            +K V +GD  VGK+C+++ +    F      TV  +F +  +   D  TV   +WDTAGQE Y  L PL YRG       + + S  S+ N  + W+ EL +H +P++ + LVG K DL E ++          +    G E     G   +IE S+KT  N+  +F+   K
Sbjct:    7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWIPEL-RHYAPNVPIVLVGTKLDLREDKQFFLDHPGLAPISTAQGEELKRMIGAAAYIECSSKTQQNVKSVFDSAIK 175          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAB38_MOUSE (Ras-related protein Rab-38 OS=Mus musculus GN=Rab38 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.328e-16
Identity = 50/170 (29.41%), Postives = 89/170 (52.35%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-----HGSPDIVMALVGNKADLHEKREVPAQDGI---EYAEKNGMF-FIETSAKTADNINQLFEEIAKRL 723
            KL+++GD GVGK+ I+ R+V   F    + T+G  F  + +     T V+ ++WD AGQER+  +  +YYR        +D+T P +F     W  +L       +G P + + L+ NK D  + ++V   +G+   ++ +++G   + ETSAK   NI++    + K +
Sbjct:   11 KLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKP-VSVVLLANKCD--QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHI 177          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAB38_HUMAN (Ras-related protein Rab-38 OS=Homo sapiens GN=RAB38 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.328e-16
Identity = 50/170 (29.41%), Postives = 89/170 (52.35%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-----HGSPDIVMALVGNKADLHEKREVPAQDGI---EYAEKNGMF-FIETSAKTADNINQLFEEIAKRL 723
            KL+++GD GVGK+ I+ R+V   F    + T+G  F  + +     T V+ ++WD AGQER+  +  +YYR        +D+T P +F     W  +L       +G P + + L+ NK D  + ++V   +G+   ++ +++G   + ETSAK   NI++    + K +
Sbjct:   11 KLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKP-VSVVLLANKCD--QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHI 177          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RASK_MELGA (GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.734e-16
Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRLPRPSPSS*LWILKSELLCLLM 786
            KLV++G  GVGKS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R        + I +  SF    ++ +++++   S D+ M LVGNK DL   R V  +   + A   G+ FIETSAKT   ++  F     EI K   + S        K++  C++M
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKTKTKCIIM 188          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAN_DICDI (GTP-binding nuclear protein Ran OS=Dictyostelium discoideum GN=ranA PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.734e-16
Identity = 52/167 (31.14%), Postives = 88/167 (52.69%), Query Frame = 1
Query:  223 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            A+  ++KLVL+GD GVGK+  V R + G+F+P    T+G S +   I   +   + F +WDTAGQE++  L   YY         +D+TS  S+     W  +L +    +I + L GNK D+ +++  P+Q  I +  +  + + + SAK+  N  + F  +  +L
Sbjct:    2 AEKEQIKLVLVGDGGVGKTTFVQRHLTGEFEPRYIPTLGVS-VHPLIFYTNFGKIHFNVWDTAGQEKFGGLRDGYYIQGNCAIIMFDVTSRISYKNVPNWHSDLTR-VCENIPIVLCGNKVDVKDRKVKPSQ--IVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKL 164          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAC1_BETVU (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.734e-16
Identity = 55/177 (31.07%), Postives = 88/177 (49.72%), Query Frame = 1
Query:  238 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE----------VPAQDGIEYAEKNGM-FFIETSAKTADNINQLFEEIAKRLPRP 732
            +K V +GD  VGK+C+++ +    F      TV  +F +  +   +  TV   +WDTAGQE Y  L PL YRG       + + S  S+ N ++ W+ EL KH +P + + LVG K DL + ++          +    G E  +  G   +IE S+KT  N+  +F+   K + +P
Sbjct:    7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV--NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RAC13_GOSHI (Rac-like GTP-binding protein RAC13 OS=Gossypium hirsutum GN=RAC13 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.734e-16
Identity = 56/180 (31.11%), Postives = 92/180 (51.11%), Query Frame = 1
Query:  238 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE----------VPAQDGIEYAEKNG-MFFIETSAKTADNINQLFE---EIAKRLPRP 732
            +K V +GD  VGK+C+++ +    F      TV  +F +  +   D +TV   +WDTAGQE Y  L PL YRG       + + S  S+ N  + W+ EL +H + ++ + LVG K DL + ++          +    G E  +  G + +IE S+KT  N+  +F+   ++A R P+P
Sbjct:    7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIYKKWIPEL-RHYAHNVPVVLVGTKLDLRDDKQFLIDHPGATPISTSQGEELKKMIGAVTYIECSSKTQQNVKAVFDAAIKVALRPPKP 183          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RRAS_MOUSE (Ras-related protein R-Ras OS=Mus musculus GN=Rras PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.265e-16
Identity = 53/176 (30.11%), Postives = 88/176 (50.00%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR-------PSPSS 744
            KLV++G  GVGKS + ++F++  F      T+  S+    I   D    + +I DTAGQE + A+   Y R        + I    SFN+  + + + L+     D  + LVGNKADL  +R+V   +   ++  + M + E SAK   N+++ FE++ + + +       PSP S
Sbjct:   31 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTK--ICTVDGIPARLDILDTAGQEEFGAMREQYMRAGNGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPIVLVGNKADLENQRQVLRSEASSFSASHHMTYFEASAKLRLNVDEAFEQLVRAVRKYQEQELPPSPPS 204          
BLAST of FC873744 vs. ExPASy Swiss-Prot
Match: RASK_RAT (GTPase KRas OS=Rattus norvegicus GN=Kras PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 2.265e-16
Identity = 53/162 (32.72%), Postives = 82/162 (50.62%), Query Frame = 1
Query:  241 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 723
            KLV++G  GVGKS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R        + I +  SF    ++ +++++   S D+ M LVGNK DL   R V  +   E A   G+ FIETSAKT   +   F  + + +
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQELARSYGIPFIETSAKTRQRVEDAFYTLVREI 163          
The following BLAST results are available for this feature:
BLAST of FC873744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RACC_DICDI1.328e-1629.95Rho-related protein racC OS=Dictyostelium discoide... [more]
RAC7_ORYSJ1.328e-1631.98Rac-like GTP-binding protein 7 OS=Oryza sativa sub... [more]
RAB38_MOUSE1.328e-1629.41Ras-related protein Rab-38 OS=Mus musculus GN=Rab3... [more]
RAB38_HUMAN1.328e-1629.41Ras-related protein Rab-38 OS=Homo sapiens GN=RAB3... [more]
RASK_MELGA1.734e-1631.55GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV... [more]
RAN_DICDI1.734e-1631.14GTP-binding nuclear protein Ran OS=Dictyostelium d... [more]
RAC1_BETVU1.734e-1631.07Rac-like GTP-binding protein RHO1 OS=Beta vulgaris... [more]
RAC13_GOSHI1.734e-1631.11Rac-like GTP-binding protein RAC13 OS=Gossypium hi... [more]
RRAS_MOUSE2.265e-1630.11Ras-related protein R-Ras OS=Mus musculus GN=Rras ... [more]
RASK_RAT2.265e-1632.72GTPase KRas OS=Rattus norvegicus GN=Kras PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AB01FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873744 ID=FC873744; Name=FC873744; organism=Citrus clementina; type=EST; length=814bp
CATCCGAAGCACTGCAGCAAATCAGCAATCAATCTGCTCATCGCAAAATC
ACTCCACTACTAATACCCTAATTACACATATACGTGCATACGCATACTTA
TATACATACTCGTTTATATATTTATTCTTACAGGTCGAATGGGTTGCTCA
GGTTCTGTTCCAGCTAGGAGTTCTGGCCAGTCCGGTGGACTTAACAACTT
GGAAAATGCAGGGTCATCTGATGCAAAAAACCTACGTGTTAAGCTGGTTC
TGTTAGGTGATTCAGGTGTTGGGAAAAGTTGTATTGTTCTTCGCTTTGTT
CGTGGCCAGTTTGACCCTACCTCCAAGGTAACTGTTGGAGCCTCATTCTT
GTCACAGACGATAGCTTTGCAAGATTCTACAACAGTTAAGTTTGAAATAT
GGGATACAGCTGGTCAAGAAAGATATGCTGCTCTGGCACCACTATATTAC
AGAGGTGCTGCAGTCGCAGTTGTTGTGTATGATATAACTAGTCCAGATTC
ATTCAACAAAGCGCAATACTGGGTTAAGGAGCTACAAAAACATGGAAGTC
CTGACATAGTCATGGCTTTAGTTGGTAACAAGGCTGATCTTCATGAGAAG
CGAGAAGTACCAGCTCAAGATGGCATTGAGTATGCGGAGAAGAATGGGAT
GTTCTTTATCGAAACATCGGCCAAGACTGCAGATAATATAAATCAGCTGT
TTGAGGAAATTGCTAAGCGACTTCCCCGCCCATCACCTTCTTCATGATTG
TGGATTCTGAAATCTGAACTGCTGTGTCTGCTGATGTAACGCCGAATCCT
GTCAGTTTGTCATA
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